Wall clock time and date at job start Tue Mar 31 2020 05:29:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.46898 * 111.00004 * 2 1 4 4 N 1.36595 * 111.00413 * 123.95787 * 2 1 3 5 5 C 1.39529 * 123.87951 * 119.99856 * 4 2 1 6 6 C 1.39359 * 130.82467 * 0.31982 * 5 4 2 7 7 C 1.37945 * 120.13275 * 180.15262 * 6 5 4 8 8 C 1.38301 * 120.37258 * 359.53649 * 7 6 5 9 9 C 1.38396 * 119.82654 * 0.23558 * 8 7 6 10 10 C 1.37678 * 119.91337 * 359.97438 * 9 8 7 11 11 C 1.51140 * 132.84947 * 180.02562 * 10 9 8 12 12 C 1.53004 * 110.62522 * 61.27848 * 11 10 9 13 13 C 1.50700 * 109.47225 * 178.40582 * 12 11 10 14 14 H 1.08005 * 119.99680 * 5.28302 * 13 12 11 15 15 C 1.37876 * 120.00212 * 185.28689 * 13 12 11 16 16 N 1.31512 * 119.99981 * 359.97438 * 15 13 12 17 17 Si 1.86797 * 120.00125 * 179.97438 * 15 13 12 18 18 H 1.48505 * 109.47021 * 59.99730 * 17 15 13 19 19 H 1.48495 * 109.47401 * 179.97438 * 17 15 13 20 20 H 1.48507 * 109.46929 * 299.99985 * 17 15 13 21 21 C 1.50695 * 110.51404 * 298.62667 * 11 10 9 22 22 C 1.38237 * 120.00106 * 251.36442 * 21 11 10 23 23 C 1.38228 * 120.00270 * 179.80546 * 22 21 11 24 24 C 1.38237 * 120.00072 * 0.41897 * 23 22 21 25 25 C 1.38236 * 119.99698 * 359.81589 * 24 23 22 26 26 C 1.38235 * 120.00040 * 71.63178 * 21 11 10 27 27 C 1.34373 * 123.87310 * 300.04304 * 4 2 1 28 28 O 1.21284 * 126.44385 * 359.93859 * 27 4 2 29 29 H 1.09001 * 109.47492 * 296.04340 * 1 2 3 30 30 H 1.09001 * 109.47664 * 56.04392 * 1 2 3 31 31 H 1.09005 * 109.47068 * 176.04200 * 1 2 3 32 32 H 1.08995 * 109.47619 * 183.95526 * 3 2 1 33 33 H 1.09004 * 109.47423 * 303.95982 * 3 2 1 34 34 H 1.09004 * 109.47071 * 63.95593 * 3 2 1 35 35 H 1.08002 * 119.93740 * 359.97438 * 6 5 4 36 36 H 1.07998 * 119.81368 * 179.77297 * 7 6 5 37 37 H 1.07999 * 120.08813 * 180.25240 * 8 7 6 38 38 H 1.08002 * 120.04345 * 180.02562 * 9 8 7 39 39 H 1.08997 * 109.46945 * 298.40302 * 12 11 10 40 40 H 1.08995 * 109.47255 * 58.40243 * 12 11 10 41 41 H 0.96997 * 120.00136 * 180.02562 * 16 15 13 42 42 H 1.08011 * 119.99623 * 359.97438 * 22 21 11 43 43 H 1.08003 * 120.00179 * 180.20606 * 23 22 21 44 44 H 1.07998 * 120.00133 * 179.78280 * 24 23 22 45 45 H 1.07999 * 120.00195 * 179.97438 * 25 24 23 46 46 H 1.07994 * 120.00054 * 359.97438 * 26 21 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 7 1.9586 -0.7123 1.0577 5 6 2.7781 -1.8340 0.9274 6 6 3.2785 -2.4699 -0.2072 7 6 4.0804 -3.5850 -0.0791 8 6 4.4020 -4.0749 1.1736 9 6 3.9126 -3.4460 2.3051 10 6 3.1085 -2.3355 2.1799 11 6 2.4289 -1.4394 3.1896 12 6 3.4631 -0.7602 4.0896 13 6 2.7612 0.1555 5.0591 14 1 1.6820 0.1803 5.0937 15 6 3.4967 0.9615 5.9020 16 7 4.8108 0.9310 5.8602 17 14 2.6266 2.0970 7.1032 18 1 1.7826 1.2921 8.0225 19 1 3.6349 2.8512 7.8904 20 1 1.7704 3.0500 6.3520 21 6 1.4464 -2.2269 4.0176 22 6 0.0881 -2.0428 3.8388 23 6 -0.8132 -2.7680 4.5955 24 6 -0.3562 -3.6711 5.5370 25 6 1.0022 -3.8516 5.7192 26 6 1.9035 -3.1293 4.9597 27 6 1.7056 -0.4136 2.3432 28 8 1.0263 0.5055 2.7490 29 1 -0.3634 0.4512 0.9233 30 1 -0.3634 0.5740 -0.8524 31 1 -0.3633 -1.0253 -0.0709 32 1 3.0827 1.3433 -0.0709 33 1 1.5897 1.9164 -0.8524 34 1 1.7044 1.8723 0.9233 35 1 3.0356 -2.0907 -1.1888 36 1 4.4624 -4.0759 -0.9620 37 1 5.0336 -4.9458 1.2686 38 1 4.1619 -3.8254 3.2851 39 1 4.0176 -1.5185 4.6425 40 1 4.1532 -0.1803 3.4767 41 1 5.3282 1.4978 6.4534 42 1 -0.2690 -1.3342 3.1060 43 1 -1.8745 -2.6265 4.4535 44 1 -1.0603 -4.2351 6.1307 45 1 1.3593 -4.5568 6.4551 46 1 2.9647 -3.2703 5.1021 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000071767484.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:29:02 Heat of formation + Delta-G solvation = 77.081859 kcal Electronic energy + Delta-G solvation = -30399.827538 eV Core-core repulsion = 26642.139676 eV Total energy + Delta-G solvation = -3757.687862 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 336.158 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.77816 -38.71450 -38.33084 -36.69834 -35.03010 -33.33447 -32.08902 -30.47540 -30.14251 -28.94799 -28.48006 -27.65228 -26.21343 -24.22528 -22.58340 -22.32262 -21.90312 -21.72605 -20.22716 -19.17559 -17.42900 -16.88881 -16.64516 -16.02438 -15.72536 -15.45683 -14.92314 -14.65683 -14.32505 -14.17232 -14.11509 -14.00932 -13.54893 -13.30546 -12.98889 -12.92184 -12.63615 -12.58436 -12.31792 -12.13464 -12.07525 -11.80900 -11.70948 -11.56127 -11.27860 -10.98613 -10.79089 -10.68463 -10.58087 -10.34674 -10.21444 -10.07441 -9.69817 -9.16199 -8.51473 -8.45092 -8.41003 -8.26845 -8.11990 -7.61045 -5.99195 -3.98549 1.51747 1.63614 1.88480 1.91263 2.60738 2.95123 3.38470 3.40451 3.46971 4.08674 4.19980 4.28515 4.50511 4.66509 4.99799 5.12600 5.16922 5.29352 5.31395 5.34577 5.39150 5.41448 5.44026 5.44323 5.55681 5.60972 5.65688 5.75593 5.82675 5.86744 5.96593 5.99532 6.05426 6.24727 6.30763 6.46072 6.51853 6.52781 6.59203 6.68918 6.78060 6.90086 6.94320 6.97504 7.13421 7.36691 7.40115 7.47185 7.47766 7.53287 8.00722 8.31629 8.65399 9.06866 9.64992 11.12101 Molecular weight = 336.16amu Principal moments of inertia in cm(-1) A = 0.008957 B = 0.005916 C = 0.005190 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3125.330502 B = 4731.418631 C = 5393.695282 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.003 4.003 2 N -0.306 5.306 3 C -0.003 4.003 4 N -0.413 5.413 5 C 0.170 3.830 6 C -0.130 4.130 7 C -0.098 4.098 8 C -0.145 4.145 9 C -0.062 4.062 10 C -0.114 4.114 11 C -0.007 4.007 12 C 0.057 3.943 13 C -0.505 4.505 14 H 0.066 0.934 15 C 0.060 3.940 16 N -0.898 5.898 17 Si 0.890 3.110 18 H -0.276 1.276 19 H -0.288 1.288 20 H -0.277 1.277 21 C -0.018 4.018 22 C -0.119 4.119 23 C -0.122 4.122 24 C -0.132 4.132 25 C -0.120 4.120 26 C -0.090 4.090 27 C 0.533 3.467 28 O -0.475 6.475 29 H 0.054 0.946 30 H 0.085 0.915 31 H 0.073 0.927 32 H 0.076 0.924 33 H 0.084 0.916 34 H 0.055 0.945 35 H 0.125 0.875 36 H 0.124 0.876 37 H 0.124 0.876 38 H 0.127 0.873 39 H 0.034 0.966 40 H 0.026 0.974 41 H 0.260 0.740 42 H 0.111 0.889 43 H 0.114 0.886 44 H 0.114 0.886 45 H 0.118 0.882 46 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.086 -10.012 -11.225 15.878 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 N -0.119 5.119 3 C -0.151 4.151 4 N -0.225 5.225 5 C 0.075 3.925 6 C -0.151 4.151 7 C -0.116 4.116 8 C -0.164 4.164 9 C -0.080 4.080 10 C -0.118 4.118 11 C -0.012 4.012 12 C 0.020 3.980 13 C -0.543 4.543 14 H 0.084 0.916 15 C -0.140 4.140 16 N -0.538 5.538 17 Si 0.718 3.282 18 H -0.202 1.202 19 H -0.214 1.214 20 H -0.203 1.203 21 C -0.018 4.018 22 C -0.137 4.137 23 C -0.140 4.140 24 C -0.150 4.150 25 C -0.139 4.139 26 C -0.108 4.108 27 C 0.321 3.679 28 O -0.346 6.346 29 H 0.072 0.928 30 H 0.103 0.897 31 H 0.092 0.908 32 H 0.095 0.905 33 H 0.102 0.898 34 H 0.073 0.927 35 H 0.143 0.857 36 H 0.142 0.858 37 H 0.142 0.858 38 H 0.145 0.855 39 H 0.052 0.948 40 H 0.044 0.956 41 H 0.070 0.930 42 H 0.129 0.871 43 H 0.132 0.868 44 H 0.132 0.868 45 H 0.136 0.864 46 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -5.267 -9.475 -11.381 15.717 hybrid contribution -0.722 1.504 1.251 2.085 sum -5.989 -7.971 -10.129 14.213 Atomic orbital electron populations 1.22926 0.86177 1.03234 1.02745 1.63055 1.08399 1.13787 1.26627 1.22940 1.01734 0.87748 1.02653 1.45376 1.47662 1.26524 1.02905 1.17899 0.92515 0.87031 0.95081 1.20295 1.00983 0.97210 0.96641 1.20786 0.97708 0.95612 0.97533 1.20976 1.02239 1.01131 0.92102 1.20260 0.95168 0.93390 0.99192 1.19935 1.01176 0.97728 0.92951 1.19395 0.96198 0.91766 0.93806 1.19089 0.91037 0.95358 0.92543 1.21128 0.93604 1.21478 1.18110 0.91596 1.24903 0.94710 0.96975 0.97440 1.69942 1.04706 1.40152 1.39021 0.86669 0.79272 0.81094 0.81155 1.20174 1.21415 1.20268 1.19021 0.92405 0.94782 0.95607 1.21033 0.92912 0.99276 1.00460 1.20929 0.98849 0.97205 0.97025 1.20980 0.95624 0.99474 0.98968 1.21020 0.93219 1.00090 0.99524 1.20879 0.99933 0.95365 0.94654 1.21097 0.79722 0.85535 0.81503 1.90719 1.37640 1.30229 1.75985 0.92754 0.89688 0.90834 0.90547 0.89777 0.92667 0.85684 0.85827 0.85792 0.85513 0.94780 0.95580 0.93006 0.87074 0.86829 0.86788 0.86389 0.85769 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.00 -0.04 9.56 60.06 0.57 0.54 16 2 N -0.31 -4.79 5.31 -128.55 -0.68 -5.48 16 3 C 0.00 -0.04 9.62 60.06 0.58 0.53 16 4 N -0.41 -7.58 2.60 -9.70 -0.03 -7.61 16 5 C 0.17 2.94 6.84 -83.69 -0.57 2.37 16 6 C -0.13 -1.85 10.03 -39.27 -0.39 -2.24 16 7 C -0.10 -1.19 10.02 -39.67 -0.40 -1.59 16 8 C -0.15 -1.84 10.07 -39.50 -0.40 -2.24 16 9 C -0.06 -0.95 9.83 -39.73 -0.39 -1.34 16 10 C -0.11 -2.08 4.92 -104.37 -0.51 -2.59 16 11 C -0.01 -0.14 0.54 -157.41 -0.09 -0.22 16 12 C 0.06 1.44 3.83 -27.88 -0.11 1.33 16 13 C -0.51 -14.25 7.67 -34.44 -0.26 -14.52 16 14 H 0.07 1.93 6.56 -52.48 -0.34 1.59 16 15 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 16 N -0.90 -26.73 13.29 55.43 0.74 -25.99 16 17 Si 0.89 22.70 29.54 -169.99 -5.02 17.68 16 18 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 19 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 20 H -0.28 -7.15 7.11 56.52 0.40 -6.75 16 21 C -0.02 -0.35 3.78 -104.63 -0.40 -0.75 16 22 C -0.12 -2.28 9.04 -39.59 -0.36 -2.64 16 23 C -0.12 -2.01 10.05 -39.59 -0.40 -2.41 16 24 C -0.13 -2.02 10.05 -39.58 -0.40 -2.42 16 25 C -0.12 -1.92 10.05 -39.58 -0.40 -2.32 16 26 C -0.09 -1.66 8.93 -39.58 -0.35 -2.01 16 27 C 0.53 11.43 4.46 -10.82 -0.05 11.38 16 28 O -0.48 -11.38 12.70 5.55 0.07 -11.31 16 29 H 0.05 0.86 6.56 -51.93 -0.34 0.52 16 30 H 0.08 0.90 8.12 -51.93 -0.42 0.48 16 31 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 32 H 0.08 1.16 8.14 -51.93 -0.42 0.74 16 33 H 0.08 0.96 8.12 -51.93 -0.42 0.54 16 34 H 0.05 0.98 6.83 -51.93 -0.35 0.63 16 35 H 0.13 1.58 8.06 -52.49 -0.42 1.16 16 36 H 0.12 1.12 8.06 -52.49 -0.42 0.70 16 37 H 0.12 1.21 8.06 -52.49 -0.42 0.79 16 38 H 0.13 1.81 7.47 -52.49 -0.39 1.41 16 39 H 0.03 0.87 7.09 -51.93 -0.37 0.50 16 40 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 41 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 42 H 0.11 2.20 5.97 -52.48 -0.31 1.89 16 43 H 0.11 1.57 8.06 -52.48 -0.42 1.15 16 44 H 0.11 1.40 8.06 -52.49 -0.42 0.97 16 45 H 0.12 1.55 8.06 -52.49 -0.42 1.12 16 46 H 0.12 2.20 6.56 -52.49 -0.34 1.86 16 LS Contribution 373.85 15.07 5.63 5.63 Total: -1.00 -32.75 373.85 -9.94 -42.70 By element: Atomic # 1 Polarization: 10.10 SS G_CDS: -6.24 Total: 3.86 kcal Atomic # 6 Polarization: -15.08 SS G_CDS: -4.41 Total: -19.49 kcal Atomic # 7 Polarization: -39.10 SS G_CDS: 0.03 Total: -39.08 kcal Atomic # 8 Polarization: -11.38 SS G_CDS: 0.07 Total: -11.31 kcal Atomic # 14 Polarization: 22.70 SS G_CDS: -5.02 Total: 17.68 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -32.75 -9.94 -42.70 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000071767484.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.778 kcal (2) G-P(sol) polarization free energy of solvation -32.752 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 87.026 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.944 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.696 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.082 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds