Wall clock time and date at job start Tue Mar 31 2020 05:01:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35991 * 117.00037 * 2 1 4 4 C 1.38675 * 120.04688 * 0.25157 * 3 2 1 5 5 C 1.38224 * 120.08867 * 180.25183 * 4 3 2 6 6 C 1.38234 * 120.18090 * 359.74952 * 5 4 3 7 7 C 1.38659 * 120.08656 * 359.97438 * 6 5 4 8 8 O 1.36000 * 120.04268 * 180.02562 * 7 6 5 9 9 C 1.42902 * 117.00072 * 359.97438 * 8 7 6 10 10 C 1.38973 * 119.91424 * 0.02562 * 7 6 5 11 11 O 1.36094 * 120.09019 * 179.97438 * 10 7 6 12 12 C 1.42910 * 117.00229 * 89.99954 * 11 10 7 13 13 C 1.53122 * 109.52286 * 149.99804 * 12 11 10 14 14 C 1.53034 * 109.27295 * 177.56004 * 13 12 11 15 15 N 1.46847 * 109.52697 * 300.81987 * 14 13 12 16 16 C 1.46896 * 111.00067 * 185.84265 * 15 14 13 17 17 H 1.09002 * 109.47213 * 55.00481 * 16 15 14 18 18 C 1.53000 * 109.47289 * 295.00076 * 16 15 14 19 19 C 1.50702 * 109.46949 * 174.99966 * 16 15 14 20 20 H 1.08002 * 120.00186 * 95.26049 * 19 16 15 21 21 C 1.37877 * 119.99992 * 275.26264 * 19 16 15 22 22 N 1.31509 * 120.00140 * 355.14935 * 21 19 16 23 23 Si 1.86808 * 119.99817 * 175.15235 * 21 19 16 24 24 H 1.48498 * 109.47133 * 59.99724 * 23 21 19 25 25 H 1.48494 * 109.46906 * 179.97438 * 23 21 19 26 26 H 1.48502 * 109.47031 * 299.99917 * 23 21 19 27 27 C 1.46845 * 111.19702 * 61.74343 * 15 14 13 28 28 C 1.53042 * 109.52419 * 298.25972 * 27 15 14 29 29 H 1.09002 * 109.46734 * 60.00311 * 1 2 3 30 30 H 1.09000 * 109.46964 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.47484 * 300.00303 * 1 2 3 32 32 H 1.08001 * 119.94848 * 0.02562 * 4 3 2 33 33 H 1.08006 * 119.91263 * 179.76672 * 5 4 3 34 34 H 1.08004 * 119.95499 * 179.97438 * 6 5 4 35 35 H 1.08997 * 109.47062 * 300.00356 * 9 8 7 36 36 H 1.09010 * 109.46748 * 60.00434 * 9 8 7 37 37 H 1.08999 * 109.47421 * 180.02562 * 9 8 7 38 38 H 1.08997 * 109.57149 * 29.84026 * 12 11 10 39 39 H 1.08994 * 109.50100 * 57.62014 * 13 12 11 40 40 H 1.08993 * 109.50144 * 297.50285 * 13 12 11 41 41 H 1.09002 * 109.45638 * 180.80531 * 14 13 12 42 42 H 1.08998 * 109.46325 * 60.84111 * 14 13 12 43 43 H 1.08997 * 109.46932 * 175.02625 * 18 16 15 44 44 H 1.09001 * 109.46506 * 295.02407 * 18 16 15 45 45 H 1.08997 * 109.46772 * 55.02340 * 18 16 15 46 46 H 0.96994 * 119.99790 * 5.12502 * 22 21 19 47 47 H 1.09003 * 109.46109 * 58.27684 * 27 15 14 48 48 H 1.09003 * 109.46664 * 178.24438 * 27 15 14 49 49 H 1.08998 * 109.50527 * 299.23511 * 28 27 15 50 50 H 1.09001 * 109.50105 * 179.11529 * 28 27 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2117 0.0000 4 6 1.2921 2.3753 0.0053 5 6 1.9187 3.6074 0.0000 6 6 3.2988 3.6851 -0.0053 7 6 4.0603 2.5263 -0.0048 8 8 5.4181 2.6038 -0.0095 9 6 5.9932 3.9120 -0.0153 10 6 3.4342 1.2856 0.0005 11 8 4.1781 0.1460 0.0004 12 6 4.5375 -0.3944 1.2737 13 6 4.6685 -1.9161 1.1653 14 6 5.1125 -2.4823 2.5159 15 7 6.4000 -1.8883 2.8979 16 6 6.9245 -2.5100 4.1210 17 1 6.9846 -3.5896 3.9828 18 6 5.9917 -2.1969 5.2927 19 6 8.2984 -1.9638 4.4128 20 1 8.4165 -1.1359 5.0962 21 6 9.4047 -2.5209 3.8071 22 7 9.2724 -3.5881 3.0501 23 14 11.0915 -1.7598 4.0620 24 1 11.4282 -1.7754 5.5082 25 1 12.1058 -2.5410 3.3096 26 1 11.0815 -0.3583 3.5712 27 6 6.2875 -0.4325 3.0541 28 6 5.8785 0.1951 1.7195 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5139 0.8899 32 1 0.2136 2.3187 0.0098 33 1 1.3284 4.5119 0.0003 34 1 3.7846 4.6497 -0.0098 35 1 5.6661 4.4487 -0.9058 36 1 5.6720 4.4540 0.8742 37 1 7.0802 3.8310 -0.0191 38 1 3.7691 -0.1461 2.0057 39 1 5.4092 -2.1643 0.4053 40 1 3.7054 -2.3455 0.8895 41 1 5.2205 -3.5642 2.4382 42 1 4.3645 -2.2456 3.2726 43 1 6.3319 -2.7301 6.1804 44 1 6.0005 -1.1245 5.4873 45 1 4.9785 -2.5131 5.0449 46 1 8.3891 -3.9394 2.8573 47 1 5.5340 -0.2053 3.8083 48 1 7.2489 -0.0254 3.3673 49 1 6.6384 -0.0200 0.9682 50 1 5.7798 1.2739 1.8398 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000071822706.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:01:43 Heat of formation + Delta-G solvation = -80.332933 kcal Electronic energy + Delta-G solvation = -30698.393060 eV Core-core repulsion = 26691.996172 eV Total energy + Delta-G solvation = -4006.396888 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.193 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.86595 -39.11051 -38.76750 -37.19475 -36.36955 -33.75240 -31.52098 -30.18981 -30.01858 -29.74993 -28.10037 -27.97167 -26.76036 -24.64056 -23.55042 -22.60727 -22.14932 -21.88371 -20.52681 -18.91807 -18.82697 -17.40178 -17.00896 -16.60793 -16.55668 -16.24775 -15.65943 -15.26628 -14.96415 -14.75988 -14.37551 -14.24183 -13.91888 -13.67668 -13.46041 -13.17378 -13.07237 -12.84974 -12.60435 -12.46317 -12.28005 -11.80326 -11.70893 -11.66673 -11.41743 -11.29484 -11.09916 -11.06156 -10.90915 -10.74809 -10.72209 -10.37878 -10.24659 -10.04133 -9.86874 -9.60211 -9.18744 -8.53648 -8.33969 -8.25076 -8.19484 -6.96812 -6.23229 -3.97392 1.06241 1.20843 2.72909 3.33984 3.49126 3.52035 3.52708 3.70041 3.95329 4.58914 4.60871 4.76447 4.87198 4.89268 4.92252 4.96396 5.00413 5.04309 5.09742 5.25905 5.30754 5.34852 5.41259 5.42103 5.62020 5.70905 5.89575 5.91875 6.00734 6.04460 6.15516 6.19308 6.20110 6.23083 6.30740 6.38835 6.42591 6.48620 6.56653 6.67137 6.72350 6.86833 6.99318 7.06249 7.12144 7.18254 7.37246 7.89858 8.00293 8.40171 8.58974 8.65311 9.00966 9.80637 11.16149 Molecular weight = 335.19amu Principal moments of inertia in cm(-1) A = 0.014520 B = 0.003453 C = 0.002991 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1927.882866 B = 8106.566392 C = 9357.911256 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.300 6.300 3 C 0.144 3.856 4 C -0.238 4.238 5 C -0.051 4.051 6 C -0.236 4.236 7 C 0.149 3.851 8 O -0.292 6.292 9 C 0.025 3.975 10 C 0.039 3.961 11 O -0.308 6.308 12 C 0.102 3.898 13 C -0.106 4.106 14 C 0.054 3.946 15 N -0.522 5.522 16 C 0.189 3.811 17 H 0.045 0.955 18 C -0.166 4.166 19 C -0.589 4.589 20 H 0.045 0.955 21 C 0.036 3.964 22 N -0.898 5.898 23 Si 1.064 2.936 24 H -0.291 1.291 25 H -0.283 1.283 26 H -0.288 1.288 27 C 0.073 3.927 28 C -0.130 4.130 29 H 0.055 0.945 30 H 0.101 0.899 31 H 0.055 0.945 32 H 0.131 0.869 33 H 0.128 0.872 34 H 0.133 0.867 35 H 0.054 0.946 36 H 0.055 0.945 37 H 0.104 0.896 38 H 0.048 0.952 39 H 0.077 0.923 40 H 0.061 0.939 41 H 0.068 0.932 42 H 0.018 0.982 43 H 0.046 0.954 44 H 0.041 0.959 45 H 0.025 0.975 46 H 0.276 0.724 47 H 0.011 0.989 48 H 0.086 0.914 49 H 0.076 0.924 50 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.330 14.648 -6.871 23.708 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.212 6.212 3 C 0.097 3.903 4 C -0.257 4.257 5 C -0.069 4.069 6 C -0.255 4.255 7 C 0.102 3.898 8 O -0.204 6.204 9 C -0.070 4.070 10 C -0.006 4.006 11 O -0.225 6.225 12 C 0.047 3.953 13 C -0.144 4.144 14 C -0.075 4.075 15 N -0.247 5.247 16 C 0.085 3.915 17 H 0.063 0.937 18 C -0.226 4.226 19 C -0.628 4.628 20 H 0.063 0.937 21 C -0.172 4.172 22 N -0.533 5.533 23 Si 0.893 3.107 24 H -0.217 1.217 25 H -0.209 1.209 26 H -0.215 1.215 27 C -0.055 4.055 28 C -0.168 4.168 29 H 0.074 0.926 30 H 0.119 0.881 31 H 0.073 0.927 32 H 0.149 0.851 33 H 0.146 0.854 34 H 0.150 0.850 35 H 0.073 0.927 36 H 0.074 0.926 37 H 0.122 0.878 38 H 0.066 0.934 39 H 0.096 0.904 40 H 0.080 0.920 41 H 0.087 0.913 42 H 0.036 0.964 43 H 0.065 0.935 44 H 0.060 0.940 45 H 0.044 0.956 46 H 0.087 0.913 47 H 0.029 0.971 48 H 0.105 0.895 49 H 0.095 0.905 50 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -15.083 13.865 -7.746 21.903 hybrid contribution -2.712 1.069 1.178 3.144 sum -17.795 14.935 -6.568 24.142 Atomic orbital electron populations 1.23105 0.78452 1.04120 1.01220 1.86205 1.21099 1.25899 1.88014 1.19068 0.90821 0.84990 0.95386 1.21038 1.00025 0.91760 1.12847 1.20673 0.93658 0.97045 0.95516 1.21078 0.94713 0.97210 1.12550 1.19087 0.83380 0.92684 0.94642 1.86292 1.16268 1.30279 1.87593 1.23134 0.99716 0.83111 1.01082 1.17066 0.86480 0.85528 1.11575 1.86212 1.69426 1.36898 1.29971 1.22483 0.95752 0.94166 0.82886 1.21623 1.01254 0.92385 0.99166 1.22011 0.92227 0.99193 0.94051 1.62822 1.21720 1.02663 1.37500 1.19482 0.93261 0.95743 0.83038 0.93665 1.22386 0.98366 1.00379 1.01442 1.21728 0.91129 1.20747 1.29236 0.93692 1.25688 1.03403 0.94612 0.93491 1.70700 1.27630 1.19674 1.35289 0.83639 0.75567 0.75663 0.75855 1.21744 1.20879 1.21481 1.21757 1.00434 0.89902 0.93421 1.22113 0.96829 0.98874 0.99004 0.92606 0.88057 0.92662 0.85071 0.85368 0.84962 0.92700 0.92619 0.87812 0.93427 0.90425 0.92009 0.91332 0.96393 0.93522 0.94039 0.95586 0.91266 0.97144 0.89545 0.90481 0.92213 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.21 9.81 101.05 0.99 1.21 16 2 O -0.30 -4.04 10.28 -34.30 -0.35 -4.39 16 3 C 0.14 1.99 6.70 -39.14 -0.26 1.73 16 4 C -0.24 -2.53 9.04 -39.43 -0.36 -2.88 16 5 C -0.05 -0.49 10.04 -39.59 -0.40 -0.89 16 6 C -0.24 -2.58 9.04 -39.43 -0.36 -2.94 16 7 C 0.15 2.11 6.58 -39.15 -0.26 1.85 16 8 O -0.29 -4.19 8.26 -34.33 -0.28 -4.48 16 9 C 0.02 0.23 9.81 101.05 0.99 1.22 16 10 C 0.04 0.63 5.59 -39.03 -0.22 0.41 16 11 O -0.31 -5.68 9.28 -45.29 -0.42 -6.10 16 12 C 0.10 1.88 2.74 -26.61 -0.07 1.80 16 13 C -0.11 -1.97 5.75 -26.65 -0.15 -2.12 16 14 C 0.05 1.08 5.03 -3.84 -0.02 1.06 16 15 N -0.52 -12.12 4.63 -228.08 -1.06 -13.17 16 16 C 0.19 4.76 2.07 -68.87 -0.14 4.62 16 17 H 0.05 1.24 6.61 -51.93 -0.34 0.89 16 18 C -0.17 -3.66 8.44 37.16 0.31 -3.35 16 19 C -0.59 -16.34 7.05 -34.44 -0.24 -16.58 16 20 H 0.04 1.25 7.81 -52.49 -0.41 0.84 16 21 C 0.04 1.02 5.45 -17.82 -0.10 0.92 16 22 N -0.90 -27.19 13.63 55.43 0.76 -26.44 16 23 Si 1.06 25.37 29.91 -169.99 -5.08 20.28 16 24 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 25 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 26 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 27 C 0.07 1.58 4.68 -3.83 -0.02 1.56 16 28 C -0.13 -2.52 5.23 -26.65 -0.14 -2.66 16 29 H 0.06 0.37 7.67 -51.93 -0.40 -0.03 16 30 H 0.10 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.05 0.38 7.65 -51.93 -0.40 -0.02 16 32 H 0.13 1.03 6.29 -52.49 -0.33 0.70 16 33 H 0.13 0.84 8.06 -52.48 -0.42 0.41 16 34 H 0.13 1.10 6.29 -52.48 -0.33 0.77 16 35 H 0.05 0.42 7.66 -51.93 -0.40 0.02 16 36 H 0.06 0.45 7.66 -51.92 -0.40 0.05 16 37 H 0.10 0.87 8.14 -51.93 -0.42 0.45 16 38 H 0.05 0.87 7.91 -51.93 -0.41 0.46 16 39 H 0.08 1.54 8.14 -51.93 -0.42 1.12 16 40 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 41 H 0.07 1.37 8.08 -51.93 -0.42 0.95 16 42 H 0.02 0.35 6.62 -51.93 -0.34 0.01 16 43 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 44 H 0.04 0.90 6.81 -51.93 -0.35 0.54 16 45 H 0.03 0.51 6.42 -51.93 -0.33 0.18 16 46 H 0.28 8.38 6.66 -40.82 -0.27 8.11 16 47 H 0.01 0.22 6.73 -51.93 -0.35 -0.13 16 48 H 0.09 2.04 6.92 -51.93 -0.36 1.68 16 49 H 0.08 1.64 8.14 -51.93 -0.42 1.22 16 50 H 0.06 1.08 6.49 -51.93 -0.34 0.75 16 LS Contribution 387.55 15.07 5.84 5.84 Total: -1.00 -32.95 387.55 -8.98 -41.93 By element: Atomic # 1 Polarization: 9.51 SS G_CDS: -7.94 Total: 1.57 kcal Atomic # 6 Polarization: -14.60 SS G_CDS: -0.44 Total: -15.04 kcal Atomic # 7 Polarization: -39.31 SS G_CDS: -0.30 Total: -39.61 kcal Atomic # 8 Polarization: -13.91 SS G_CDS: -1.06 Total: -14.97 kcal Atomic # 14 Polarization: 25.37 SS G_CDS: -5.08 Total: 20.28 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -32.95 -8.98 -41.93 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000071822706.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.406 kcal (2) G-P(sol) polarization free energy of solvation -32.950 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.356 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.977 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.927 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.333 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds