Wall clock time and date at job start Tue Mar 31 2020 05:01:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35991 * 117.00037 * 2 1 4 4 C 1.38675 * 120.04688 * 0.25157 * 3 2 1 5 5 C 1.38224 * 120.08867 * 180.25183 * 4 3 2 6 6 C 1.38234 * 120.18090 * 359.74952 * 5 4 3 7 7 C 1.38659 * 120.08656 * 359.97438 * 6 5 4 8 8 O 1.36000 * 120.04268 * 180.02562 * 7 6 5 9 9 C 1.42902 * 117.00072 * 359.97438 * 8 7 6 10 10 C 1.38973 * 119.91424 * 0.02562 * 7 6 5 11 11 O 1.36094 * 120.09019 * 179.97438 * 10 7 6 12 12 C 1.42910 * 117.00229 * 89.99954 * 11 10 7 13 13 C 1.53122 * 109.52286 * 149.99804 * 12 11 10 14 14 C 1.53034 * 109.27295 * 177.56004 * 13 12 11 15 15 N 1.46847 * 109.52697 * 300.81987 * 14 13 12 16 16 C 1.46896 * 111.00067 * 185.84265 * 15 14 13 17 17 H 1.09002 * 109.47213 * 55.00481 * 16 15 14 18 18 C 1.53000 * 109.47289 * 295.00076 * 16 15 14 19 19 C 1.50702 * 109.46949 * 174.99966 * 16 15 14 20 20 H 1.08002 * 120.00186 * 95.26049 * 19 16 15 21 21 C 1.37877 * 119.99992 * 275.26264 * 19 16 15 22 22 N 1.31509 * 120.00140 * 355.14935 * 21 19 16 23 23 Si 1.86808 * 119.99817 * 175.15235 * 21 19 16 24 24 H 1.48498 * 109.47133 * 59.99724 * 23 21 19 25 25 H 1.48494 * 109.46906 * 179.97438 * 23 21 19 26 26 H 1.48502 * 109.47031 * 299.99917 * 23 21 19 27 27 C 1.46845 * 111.19702 * 61.74343 * 15 14 13 28 28 C 1.53042 * 109.52419 * 298.25972 * 27 15 14 29 29 H 1.09002 * 109.46734 * 60.00311 * 1 2 3 30 30 H 1.09000 * 109.46964 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.47484 * 300.00303 * 1 2 3 32 32 H 1.08001 * 119.94848 * 0.02562 * 4 3 2 33 33 H 1.08006 * 119.91263 * 179.76672 * 5 4 3 34 34 H 1.08004 * 119.95499 * 179.97438 * 6 5 4 35 35 H 1.08997 * 109.47062 * 300.00356 * 9 8 7 36 36 H 1.09010 * 109.46748 * 60.00434 * 9 8 7 37 37 H 1.08999 * 109.47421 * 180.02562 * 9 8 7 38 38 H 1.08997 * 109.57149 * 29.84026 * 12 11 10 39 39 H 1.08994 * 109.50100 * 57.62014 * 13 12 11 40 40 H 1.08993 * 109.50144 * 297.50285 * 13 12 11 41 41 H 1.09002 * 109.45638 * 180.80531 * 14 13 12 42 42 H 1.08998 * 109.46325 * 60.84111 * 14 13 12 43 43 H 1.08997 * 109.46932 * 175.02625 * 18 16 15 44 44 H 1.09001 * 109.46506 * 295.02407 * 18 16 15 45 45 H 1.08997 * 109.46772 * 55.02340 * 18 16 15 46 46 H 0.96994 * 119.99790 * 5.12502 * 22 21 19 47 47 H 1.09003 * 109.46109 * 58.27684 * 27 15 14 48 48 H 1.09003 * 109.46664 * 178.24438 * 27 15 14 49 49 H 1.08998 * 109.50527 * 299.23511 * 28 27 15 50 50 H 1.09001 * 109.50105 * 179.11529 * 28 27 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2117 0.0000 4 6 1.2921 2.3753 0.0053 5 6 1.9187 3.6074 0.0000 6 6 3.2988 3.6851 -0.0053 7 6 4.0603 2.5263 -0.0048 8 8 5.4181 2.6038 -0.0095 9 6 5.9932 3.9120 -0.0153 10 6 3.4342 1.2856 0.0005 11 8 4.1781 0.1460 0.0004 12 6 4.5375 -0.3944 1.2737 13 6 4.6685 -1.9161 1.1653 14 6 5.1125 -2.4823 2.5159 15 7 6.4000 -1.8883 2.8979 16 6 6.9245 -2.5100 4.1210 17 1 6.9846 -3.5896 3.9828 18 6 5.9917 -2.1969 5.2927 19 6 8.2984 -1.9638 4.4128 20 1 8.4165 -1.1359 5.0962 21 6 9.4047 -2.5209 3.8071 22 7 9.2724 -3.5881 3.0501 23 14 11.0915 -1.7598 4.0620 24 1 11.4282 -1.7754 5.5082 25 1 12.1058 -2.5410 3.3096 26 1 11.0815 -0.3583 3.5712 27 6 6.2875 -0.4325 3.0541 28 6 5.8785 0.1951 1.7195 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5139 0.8899 32 1 0.2136 2.3187 0.0098 33 1 1.3284 4.5119 0.0003 34 1 3.7846 4.6497 -0.0098 35 1 5.6661 4.4487 -0.9058 36 1 5.6720 4.4540 0.8742 37 1 7.0802 3.8310 -0.0191 38 1 3.7691 -0.1461 2.0057 39 1 5.4092 -2.1643 0.4053 40 1 3.7054 -2.3455 0.8895 41 1 5.2205 -3.5642 2.4382 42 1 4.3645 -2.2456 3.2726 43 1 6.3319 -2.7301 6.1804 44 1 6.0005 -1.1245 5.4873 45 1 4.9785 -2.5131 5.0449 46 1 8.3891 -3.9394 2.8573 47 1 5.5340 -0.2053 3.8083 48 1 7.2489 -0.0254 3.3673 49 1 6.6384 -0.0200 0.9682 50 1 5.7798 1.2739 1.8398 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000071822706.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:01:42 Heat of formation + Delta-G solvation = -100.945503 kcal Electronic energy + Delta-G solvation = -30699.286888 eV Core-core repulsion = 26691.996172 eV Total energy + Delta-G solvation = -4007.290716 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.193 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.83271 -40.31681 -39.97875 -38.60768 -37.28015 -35.58341 -33.40278 -31.83272 -31.11859 -30.58957 -29.76188 -28.68499 -27.51641 -26.70939 -25.13832 -24.12946 -23.31224 -22.82509 -22.30343 -20.54565 -19.82450 -18.65373 -18.48950 -17.92654 -17.42855 -17.31631 -16.59054 -16.41402 -16.14064 -15.88823 -15.71993 -15.66173 -15.58335 -15.50199 -15.03832 -14.65620 -14.37448 -14.13657 -13.65981 -13.60859 -13.31371 -13.23184 -13.00776 -12.95087 -12.87724 -12.59374 -12.56326 -12.39664 -12.29230 -12.08804 -11.97363 -11.94720 -11.84476 -11.66698 -11.61759 -11.38717 -10.68985 -10.59470 -10.33907 -9.26476 -9.17558 -8.79088 -8.48491 -6.23279 0.14987 0.34024 1.55051 1.63401 1.81611 1.92108 2.37618 2.62174 2.73075 2.87989 3.10865 3.58977 3.83251 3.85148 3.88245 4.03168 4.06135 4.09710 4.12516 4.24597 4.30293 4.37536 4.38801 4.39493 4.40069 4.41922 4.47545 4.54828 4.57756 4.67760 4.71818 4.73403 4.74487 4.83143 4.92317 4.99201 5.04571 5.14572 5.17081 5.17162 5.23274 5.35224 5.37804 5.42642 5.46614 5.96190 6.14023 6.25995 6.34213 6.61428 6.65665 6.75885 6.86050 7.62147 8.89832 Molecular weight = 335.19amu Principal moments of inertia in cm(-1) A = 0.014520 B = 0.003453 C = 0.002991 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1927.882866 B = 8106.566392 C = 9357.911256 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.330 6.330 3 C 0.133 3.867 4 C -0.235 4.235 5 C -0.038 4.038 6 C -0.236 4.236 7 C 0.134 3.866 8 O -0.326 6.326 9 C 0.016 3.984 10 C -0.013 4.013 11 O -0.326 6.326 12 C 0.113 3.887 13 C -0.098 4.098 14 C 0.059 3.941 15 N -0.543 5.543 16 C 0.188 3.812 17 H 0.016 0.984 18 C -0.155 4.155 19 C -0.595 4.595 20 H 0.041 0.959 21 C -0.014 4.014 22 N -0.928 5.928 23 Si 1.108 2.892 24 H -0.271 1.271 25 H -0.287 1.287 26 H -0.275 1.275 27 C 0.082 3.918 28 C -0.115 4.115 29 H 0.072 0.928 30 H 0.113 0.887 31 H 0.070 0.930 32 H 0.162 0.838 33 H 0.170 0.830 34 H 0.159 0.841 35 H 0.074 0.926 36 H 0.070 0.930 37 H 0.107 0.893 38 H 0.050 0.950 39 H 0.057 0.943 40 H 0.081 0.919 41 H 0.064 0.936 42 H 0.031 0.969 43 H 0.047 0.953 44 H 0.043 0.957 45 H 0.045 0.955 46 H 0.262 0.738 47 H 0.020 0.980 48 H 0.061 0.939 49 H 0.050 0.950 50 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.622 17.493 -6.713 27.131 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.244 6.244 3 C 0.087 3.913 4 C -0.254 4.254 5 C -0.056 4.056 6 C -0.255 4.255 7 C 0.087 3.913 8 O -0.239 6.239 9 C -0.078 4.078 10 C -0.058 4.058 11 O -0.243 6.243 12 C 0.057 3.943 13 C -0.136 4.136 14 C -0.069 4.069 15 N -0.268 5.268 16 C 0.083 3.917 17 H 0.034 0.966 18 C -0.214 4.214 19 C -0.633 4.633 20 H 0.059 0.941 21 C -0.216 4.216 22 N -0.564 5.564 23 Si 0.931 3.069 24 H -0.196 1.196 25 H -0.213 1.213 26 H -0.201 1.201 27 C -0.047 4.047 28 C -0.153 4.153 29 H 0.091 0.909 30 H 0.132 0.868 31 H 0.088 0.912 32 H 0.179 0.821 33 H 0.187 0.813 34 H 0.177 0.823 35 H 0.092 0.908 36 H 0.089 0.911 37 H 0.126 0.874 38 H 0.068 0.932 39 H 0.075 0.925 40 H 0.100 0.900 41 H 0.082 0.918 42 H 0.049 0.951 43 H 0.066 0.934 44 H 0.062 0.938 45 H 0.064 0.936 46 H 0.072 0.928 47 H 0.038 0.962 48 H 0.079 0.921 49 H 0.069 0.931 50 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -17.408 16.731 -7.580 25.306 hybrid contribution -2.152 0.277 1.095 2.430 sum -19.560 17.008 -6.486 26.719 Atomic orbital electron populations 1.23413 0.76026 1.05566 1.02700 1.86155 1.23737 1.26410 1.88056 1.19266 0.90390 0.86172 0.95489 1.21422 1.01418 0.90973 1.11550 1.21208 0.93430 0.98210 0.92728 1.21433 0.95348 0.97157 1.11540 1.19325 0.83585 0.93202 0.95176 1.86230 1.16883 1.32993 1.87833 1.23390 0.99891 0.81760 1.02726 1.17592 0.87568 0.85267 1.15353 1.86179 1.70272 1.38485 1.29335 1.22222 0.94772 0.93563 0.83718 1.21520 1.01463 0.93129 0.97518 1.21987 0.90973 0.98827 0.95147 1.62544 1.23919 1.03612 1.36731 1.19340 0.93378 0.94040 0.84974 0.96552 1.22220 0.98671 1.00519 1.00024 1.22028 0.92633 1.20108 1.28576 0.94078 1.27023 1.07241 0.94389 0.92907 1.70826 1.26721 1.21387 1.37480 0.83065 0.71613 0.75350 0.76876 1.19600 1.21315 1.20103 1.21653 0.99343 0.88867 0.94804 1.21931 0.96930 0.99473 0.96935 0.90944 0.86844 0.91189 0.82070 0.81288 0.82304 0.90753 0.91126 0.87447 0.93228 0.92465 0.90045 0.91792 0.95073 0.93433 0.93756 0.93583 0.92785 0.96180 0.92091 0.93121 0.91027 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.24 9.81 113.37 1.11 1.35 16 2 O -0.33 -8.56 10.28 -79.51 -0.82 -9.37 16 3 C 0.13 3.51 6.70 22.55 0.15 3.66 16 4 C -0.23 -4.22 9.04 22.37 0.20 -4.02 16 5 C -0.04 -0.58 10.04 22.27 0.22 -0.35 16 6 C -0.24 -4.46 9.04 22.37 0.20 -4.26 16 7 C 0.13 3.67 6.58 22.55 0.15 3.82 16 8 O -0.33 -9.34 8.26 -79.60 -0.66 -10.00 16 9 C 0.02 0.29 9.81 113.37 1.11 1.40 16 10 C -0.01 -0.41 5.59 22.62 0.13 -0.28 16 11 O -0.33 -12.30 9.28 -70.46 -0.65 -12.95 16 12 C 0.11 4.20 2.74 30.67 0.08 4.29 16 13 C -0.10 -3.71 5.75 30.65 0.18 -3.54 16 14 C 0.06 2.39 5.03 86.32 0.43 2.83 16 15 N -0.54 -25.85 4.63 -875.51 -4.06 -29.91 16 16 C 0.19 9.68 2.07 44.17 0.09 9.77 16 17 H 0.02 0.94 6.61 -2.39 -0.02 0.92 16 18 C -0.16 -6.75 8.44 71.98 0.61 -6.15 16 19 C -0.59 -33.61 7.05 25.60 0.18 -33.43 16 20 H 0.04 2.30 7.81 -2.91 -0.02 2.28 16 21 C -0.01 -0.84 5.45 84.66 0.46 -0.38 16 22 N -0.93 -58.02 13.63 21.45 0.29 -57.73 16 23 Si 1.11 51.62 29.91 68.60 2.05 53.67 16 24 H -0.27 -11.65 7.11 99.48 0.71 -10.94 16 25 H -0.29 -13.51 7.11 99.48 0.71 -12.80 16 26 H -0.28 -12.14 7.11 99.48 0.71 -11.43 16 27 C 0.08 3.57 4.68 86.33 0.40 3.98 16 28 C -0.11 -4.56 5.23 30.65 0.16 -4.40 16 29 H 0.07 0.76 7.67 -2.39 -0.02 0.74 16 30 H 0.11 1.26 8.14 -2.39 -0.02 1.24 16 31 H 0.07 0.76 7.65 -2.39 -0.02 0.74 16 32 H 0.16 1.81 6.29 -2.91 -0.02 1.80 16 33 H 0.17 1.19 8.06 -2.91 -0.02 1.16 16 34 H 0.16 2.03 6.29 -2.91 -0.02 2.01 16 35 H 0.07 0.98 7.66 -2.39 -0.02 0.96 16 36 H 0.07 1.00 7.66 -2.38 -0.02 0.98 16 37 H 0.11 1.74 8.14 -2.39 -0.02 1.72 16 38 H 0.05 1.81 7.91 -2.39 -0.02 1.79 16 39 H 0.06 2.38 8.14 -2.39 -0.02 2.36 16 40 H 0.08 2.74 8.14 -2.39 -0.02 2.72 16 41 H 0.06 2.62 8.08 -2.39 -0.02 2.60 16 42 H 0.03 1.19 6.62 -2.39 -0.02 1.17 16 43 H 0.05 2.02 8.14 -2.39 -0.02 2.00 16 44 H 0.04 1.88 6.81 -2.39 -0.02 1.86 16 45 H 0.05 1.79 6.42 -2.39 -0.02 1.77 16 46 H 0.26 16.67 6.66 -92.71 -0.62 16.05 16 47 H 0.02 0.84 6.73 -2.39 -0.02 0.82 16 48 H 0.06 2.95 6.92 -2.39 -0.02 2.93 16 49 H 0.05 2.26 8.14 -2.39 -0.02 2.24 16 50 H 0.07 2.65 6.49 -2.39 -0.02 2.64 16 Total: -1.00 -74.78 387.55 3.12 -71.66 By element: Atomic # 1 Polarization: 19.26 SS G_CDS: 1.08 Total: 20.34 kcal Atomic # 6 Polarization: -31.59 SS G_CDS: 5.88 Total: -25.71 kcal Atomic # 7 Polarization: -83.87 SS G_CDS: -3.77 Total: -87.64 kcal Atomic # 8 Polarization: -30.20 SS G_CDS: -2.13 Total: -32.32 kcal Atomic # 14 Polarization: 51.62 SS G_CDS: 2.05 Total: 53.67 kcal Total: -74.78 3.12 -71.66 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000071822706.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.284 kcal (2) G-P(sol) polarization free energy of solvation -74.780 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.064 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.118 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.661 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.946 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds