Wall clock time and date at job start Tue Mar 31 2020 04:54:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13601 * 1 3 3 C 1.47205 * 179.97438 * 2 1 4 4 C 1.53000 * 109.47360 * 320.30787 * 3 2 1 5 5 N 1.46493 * 109.47156 * 180.02562 * 4 3 2 6 6 C 1.46506 * 119.99811 * 90.00429 * 5 4 3 7 7 C 1.50703 * 109.47289 * 89.99713 * 6 5 4 8 8 H 1.07994 * 119.99399 * 0.02562 * 7 6 5 9 9 C 1.37874 * 119.99789 * 179.97438 * 7 6 5 10 10 N 1.31512 * 119.99734 * 179.97438 * 9 7 6 11 11 Si 1.86799 * 120.00111 * 0.02562 * 9 7 6 12 12 H 1.48498 * 109.47123 * 89.99915 * 11 9 7 13 13 H 1.48498 * 109.47161 * 209.99603 * 11 9 7 14 14 H 1.48497 * 109.47329 * 329.99749 * 11 9 7 15 15 C 1.34778 * 120.00131 * 269.99999 * 5 4 3 16 16 O 1.21672 * 119.99904 * 179.97438 * 15 5 4 17 17 C 1.46596 * 119.99685 * 0.02562 * 15 5 4 18 18 C 1.34868 * 119.99479 * 180.02562 * 17 15 5 19 19 C 1.47036 * 119.99663 * 179.97438 * 18 17 15 20 20 C 1.39482 * 121.43836 * 359.71538 * 19 18 17 21 21 C 1.38950 * 119.44592 * 179.73452 * 20 19 18 22 22 N 1.30942 * 122.60301 * 0.59140 * 21 20 19 23 23 C 1.33533 * 122.46780 * 359.68653 * 22 21 20 24 24 C 1.40653 * 121.17746 * 180.02562 * 23 22 21 25 25 C 1.36114 * 119.70607 * 180.02562 * 24 23 22 26 26 C 1.39301 * 121.09802 * 359.95558 * 25 24 23 27 27 C 1.36357 * 120.80276 * 359.97438 * 26 25 24 28 28 C 1.39859 * 119.57293 * 0.02562 * 27 26 25 29 29 H 1.09001 * 109.46575 * 200.30887 * 3 2 1 30 30 H 1.08997 * 109.47167 * 80.31154 * 3 2 1 31 31 H 1.09006 * 109.46591 * 59.99820 * 4 3 2 32 32 H 1.09005 * 109.46719 * 300.00580 * 4 3 2 33 33 H 1.09001 * 109.47060 * 210.00163 * 6 5 4 34 34 H 1.09004 * 109.47073 * 329.99652 * 6 5 4 35 35 H 0.97007 * 120.00011 * 180.02562 * 10 9 7 36 36 H 1.07994 * 120.00184 * 359.97438 * 17 15 5 37 37 H 1.07999 * 119.99880 * 359.97438 * 18 17 15 38 38 H 1.08003 * 120.27325 * 0.02562 * 20 19 18 39 39 H 1.08000 * 118.69904 * 180.27825 * 21 20 19 40 40 H 1.07992 * 120.15209 * 359.97438 * 24 23 22 41 41 H 1.08002 * 119.45012 * 179.97438 * 25 24 23 42 42 H 1.08000 * 119.59996 * 180.02562 * 26 25 24 43 43 H 1.08003 * 120.21816 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6081 0.0007 0.0000 4 6 3.1186 -1.1091 0.9213 5 7 4.5835 -1.1080 0.9217 6 6 5.3151 -0.2973 1.8984 7 6 5.5665 -1.1128 3.1406 8 1 5.2166 -2.1330 3.1966 9 6 6.2439 -0.5568 4.2049 10 7 6.4628 -1.2683 5.2890 11 14 6.8496 1.2076 4.1075 12 1 5.7973 2.1212 4.6206 13 1 8.0773 1.3556 4.9296 14 1 7.1556 1.5487 2.6950 15 6 5.2583 -1.8528 0.0236 16 8 6.4750 -1.8515 0.0237 17 6 4.5262 -2.6636 -0.9539 18 6 5.2014 -3.4093 -1.8522 19 6 4.4671 -4.2229 -2.8324 20 6 3.0728 -4.2504 -2.8564 21 6 2.4211 -5.0298 -3.8044 22 7 3.0645 -5.7586 -4.6816 23 6 4.3979 -5.8037 -4.7361 24 6 5.0612 -6.5959 -5.6905 25 6 6.4219 -6.6201 -5.7189 26 6 7.1737 -5.8708 -4.8168 27 6 6.5647 -5.0905 -3.8790 28 6 5.1680 -5.0427 -3.8222 29 1 2.9709 0.9646 0.3567 30 1 2.9715 -0.1721 -1.0130 31 1 2.7556 -2.0730 0.5645 32 1 2.7551 -0.9362 1.9343 33 1 6.2674 0.0157 1.4703 34 1 4.7253 0.5828 2.1548 35 1 6.9391 -0.8769 6.0381 36 1 3.4462 -2.6644 -0.9543 37 1 6.2814 -3.4087 -1.8516 38 1 2.5044 -3.6672 -2.1470 39 1 1.3412 -5.0386 -3.8149 40 1 4.4936 -7.1830 -6.3971 41 1 6.9269 -7.2301 -6.4532 42 1 8.2522 -5.9076 -4.8613 43 1 7.1569 -4.5131 -3.1845 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000071910529.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:54:13 Heat of formation + Delta-G solvation = 71.099980 kcal Electronic energy + Delta-G solvation = -26748.897270 eV Core-core repulsion = 22952.835582 eV Total energy + Delta-G solvation = -3796.061688 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 335.137 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.86653 -39.51016 -37.33768 -37.00373 -35.59291 -35.11160 -32.89551 -31.72029 -31.08888 -30.81445 -29.82197 -28.14468 -25.30426 -24.17900 -23.93432 -23.45580 -22.15204 -20.33112 -18.73732 -18.31874 -17.91464 -17.43477 -17.06339 -16.88101 -16.24640 -15.75336 -14.85464 -14.82729 -14.65908 -14.54445 -14.52862 -14.24815 -14.07953 -13.83550 -13.61020 -13.36093 -13.11028 -12.74535 -12.57961 -12.37824 -12.10972 -12.07137 -11.96544 -11.74446 -11.69221 -11.41490 -11.36605 -11.13119 -10.98079 -10.63218 -10.22929 -9.74225 -9.66711 -9.50326 -9.35793 -9.04994 -8.67543 -8.26061 -7.97619 -6.16471 -4.16737 -0.20172 0.59165 1.13754 2.12757 2.63136 2.71061 2.72854 3.20733 3.28663 3.31683 3.42086 3.62901 3.90700 3.97905 4.02351 4.25626 4.31950 4.36412 4.44299 4.59881 4.72860 4.85238 4.90905 4.99118 4.99798 5.03181 5.14426 5.18964 5.26410 5.31695 5.50674 5.53307 5.66100 5.73186 5.79958 5.93924 5.97482 6.06344 6.18402 6.25265 6.33784 6.51810 6.57753 6.83304 7.08651 7.46908 7.49795 7.70108 7.95763 8.35528 8.68599 8.87183 9.42469 10.96691 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.011780 B = 0.002904 C = 0.002436 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2376.254397 B = 9639.268802 C =11489.260162 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.440 5.440 2 C 0.215 3.785 3 C -0.052 4.052 4 C 0.114 3.886 5 N -0.584 5.584 6 C 0.214 3.786 7 C -0.533 4.533 8 H 0.076 0.924 9 C 0.074 3.926 10 N -0.895 5.895 11 Si 0.873 3.127 12 H -0.275 1.275 13 H -0.284 1.284 14 H -0.263 1.263 15 C 0.538 3.462 16 O -0.529 6.529 17 C -0.166 4.166 18 C -0.056 4.056 19 C 0.005 3.995 20 C -0.170 4.170 21 C 0.140 3.860 22 N -0.481 5.481 23 C 0.127 3.873 24 C -0.095 4.095 25 C -0.102 4.102 26 C -0.116 4.116 27 C -0.093 4.093 28 C -0.091 4.091 29 H 0.116 0.884 30 H 0.109 0.891 31 H 0.080 0.920 32 H 0.099 0.901 33 H 0.046 0.954 34 H 0.030 0.970 35 H 0.266 0.734 36 H 0.131 0.869 37 H 0.142 0.858 38 H 0.143 0.857 39 H 0.160 0.840 40 H 0.135 0.865 41 H 0.129 0.871 42 H 0.130 0.870 43 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.217 -5.608 -20.562 21.726 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.117 5.117 2 C -0.104 4.104 3 C -0.093 4.093 4 C -0.012 4.012 5 N -0.314 5.314 6 C 0.094 3.906 7 C -0.572 4.572 8 H 0.094 0.906 9 C -0.129 4.129 10 N -0.532 5.532 11 Si 0.700 3.300 12 H -0.200 1.200 13 H -0.209 1.209 14 H -0.187 1.187 15 C 0.326 3.674 16 O -0.407 6.407 17 C -0.188 4.188 18 C -0.076 4.076 19 C -0.003 4.003 20 C -0.190 4.190 21 C -0.033 4.033 22 N -0.190 5.190 23 C 0.007 3.993 24 C -0.114 4.114 25 C -0.122 4.122 26 C -0.134 4.134 27 C -0.111 4.111 28 C -0.093 4.093 29 H 0.134 0.866 30 H 0.127 0.873 31 H 0.099 0.901 32 H 0.117 0.883 33 H 0.064 0.936 34 H 0.048 0.952 35 H 0.076 0.924 36 H 0.148 0.852 37 H 0.160 0.840 38 H 0.161 0.839 39 H 0.177 0.823 40 H 0.153 0.847 41 H 0.147 0.853 42 H 0.147 0.853 43 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -5.535 -6.130 -21.007 22.572 hybrid contribution 1.098 1.394 0.901 1.990 sum -4.437 -4.736 -20.105 21.127 Atomic orbital electron populations 1.81230 1.12962 1.08692 1.08853 1.29042 0.95034 0.93213 0.93080 1.19913 0.81547 1.04079 1.03785 1.21404 0.81647 0.97092 1.01029 1.47783 1.05043 1.45750 1.32807 1.19774 0.92652 0.90502 0.87686 1.21288 1.37456 1.00978 0.97448 0.90609 1.24854 0.95151 0.97805 0.95095 1.69889 1.41183 1.36915 1.05262 0.86891 0.79021 0.85206 0.78899 1.20040 1.20938 1.18702 1.18113 0.87426 0.80474 0.81341 1.90807 1.13387 1.64304 1.72215 1.23453 1.00570 0.98410 0.96382 1.22111 1.00768 0.92809 0.91918 1.20450 0.92990 0.93750 0.93113 1.22480 0.93972 1.01535 1.00971 1.22732 1.00574 0.90528 0.89449 1.67617 1.08857 1.19562 1.22915 1.18783 0.89084 0.96263 0.95186 1.20811 0.94219 0.98525 0.97819 1.20929 0.93721 0.98753 0.98789 1.21007 1.00551 0.96631 0.95253 1.21002 0.92868 0.98630 0.98641 1.19793 0.94585 0.98347 0.96560 0.86583 0.87341 0.90135 0.88289 0.93644 0.95240 0.92450 0.85164 0.83994 0.83948 0.82312 0.84741 0.85276 0.85255 0.84670 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.44 -5.95 18.54 42.15 0.78 -5.17 16 2 C 0.21 2.30 15.43 -20.76 -0.32 1.98 16 3 C -0.05 -0.46 6.03 -29.52 -0.18 -0.64 16 4 C 0.11 1.37 5.07 -4.05 -0.02 1.35 16 5 N -0.58 -9.89 2.46 -176.63 -0.43 -10.32 16 6 C 0.21 4.56 4.23 -5.19 -0.02 4.54 16 7 C -0.53 -14.13 9.94 -34.44 -0.34 -14.47 16 8 H 0.08 2.23 8.06 -52.49 -0.42 1.80 16 9 C 0.07 2.03 5.47 -17.82 -0.10 1.94 16 10 N -0.89 -26.47 13.96 55.43 0.77 -25.69 16 11 Si 0.87 20.14 27.47 -169.99 -4.67 15.47 16 12 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 13 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 14 H -0.26 -5.80 6.54 56.52 0.37 -5.43 16 15 C 0.54 9.30 7.61 -12.89 -0.10 9.20 16 16 O -0.53 -11.49 15.81 5.21 0.08 -11.40 16 17 C -0.17 -2.06 8.64 -37.41 -0.32 -2.38 16 18 C -0.06 -0.68 9.15 -37.21 -0.34 -1.02 16 19 C 0.01 0.06 6.07 -102.59 -0.62 -0.57 16 20 C -0.17 -1.61 9.50 -38.85 -0.37 -1.98 16 21 C 0.14 1.35 11.09 -17.67 -0.20 1.15 16 22 N -0.48 -5.67 10.26 -11.12 -0.11 -5.78 16 23 C 0.13 1.49 6.62 -84.90 -0.56 0.93 16 24 C -0.10 -0.92 9.99 -39.43 -0.39 -1.31 16 25 C -0.10 -0.82 9.94 -39.95 -0.40 -1.22 16 26 C -0.12 -0.99 9.97 -39.86 -0.40 -1.39 16 27 C -0.09 -0.95 9.48 -39.65 -0.38 -1.32 16 28 C -0.09 -1.06 5.90 -104.70 -0.62 -1.67 16 29 H 0.12 0.98 8.14 -51.93 -0.42 0.55 16 30 H 0.11 0.76 8.14 -51.93 -0.42 0.34 16 31 H 0.08 0.79 6.10 -51.93 -0.32 0.47 16 32 H 0.10 1.29 8.07 -51.93 -0.42 0.87 16 33 H 0.05 1.06 6.48 -51.93 -0.34 0.72 16 34 H 0.03 0.57 7.50 -51.93 -0.39 0.18 16 35 H 0.27 7.36 8.31 -40.82 -0.34 7.02 16 36 H 0.13 1.18 4.35 -52.49 -0.23 0.95 16 37 H 0.14 1.81 6.08 -52.49 -0.32 1.49 16 38 H 0.14 1.00 6.32 -52.48 -0.33 0.67 16 39 H 0.16 1.03 8.06 -52.49 -0.42 0.61 16 40 H 0.13 1.09 8.06 -52.49 -0.42 0.67 16 41 H 0.13 0.68 8.06 -52.49 -0.42 0.26 16 42 H 0.13 0.80 8.06 -52.49 -0.42 0.37 16 43 H 0.14 1.26 6.54 -52.48 -0.34 0.92 16 LS Contribution 375.69 15.07 5.66 5.66 Total: -1.00 -35.19 375.69 -8.40 -43.60 By element: Atomic # 1 Polarization: 5.34 SS G_CDS: -4.81 Total: 0.53 kcal Atomic # 6 Polarization: -1.22 SS G_CDS: -5.67 Total: -6.89 kcal Atomic # 7 Polarization: -47.98 SS G_CDS: 1.01 Total: -46.97 kcal Atomic # 8 Polarization: -11.49 SS G_CDS: 0.08 Total: -11.40 kcal Atomic # 14 Polarization: 20.14 SS G_CDS: -4.67 Total: 15.47 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -35.19 -8.40 -43.60 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000071910529.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.697 kcal (2) G-P(sol) polarization free energy of solvation -35.194 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.503 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.403 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.597 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.100 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds