Wall clock time and date at job start Tue Mar 31 2020 06:00:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31417 * 1 3 3 Si 1.86796 * 119.99931 * 2 1 4 4 H 1.48505 * 109.47357 * 270.00076 * 3 2 1 5 5 H 1.48499 * 109.47197 * 30.00198 * 3 2 1 6 6 H 1.48498 * 109.47175 * 150.00407 * 3 2 1 7 7 C 1.38946 * 119.99957 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00087 * 180.02562 * 7 2 1 9 9 N 1.37102 * 120.00349 * 359.97438 * 7 2 1 10 10 C 1.34770 * 120.00399 * 180.02562 * 9 7 2 11 11 O 1.21290 * 120.00147 * 359.97438 * 10 9 7 12 12 C 1.50697 * 120.00347 * 180.02562 * 10 9 7 13 13 H 1.09009 * 115.55756 * 325.68615 * 12 10 9 14 14 C 1.53072 * 117.51642 * 111.38693 * 12 10 9 15 15 C 1.52994 * 117.50223 * 179.97438 * 12 10 9 16 16 H 1.09002 * 117.50202 * 144.99623 * 15 12 10 17 17 C 1.50697 * 117.49802 * 359.97438 * 15 12 10 18 18 C 1.38270 * 119.94382 * 120.09017 * 17 15 12 19 19 C 1.38143 * 120.05378 * 180.02562 * 18 17 15 20 20 C 1.38735 * 119.94455 * 359.97438 * 19 18 17 21 21 O 1.35903 * 120.05503 * 179.72940 * 20 19 18 22 22 C 1.42895 * 117.00049 * 179.97438 * 21 20 19 23 23 C 1.50700 * 109.47240 * 179.97438 * 22 21 20 24 24 C 1.38238 * 120.00081 * 269.72838 * 23 22 21 25 25 C 1.38239 * 119.99526 * 179.78754 * 24 23 22 26 26 C 1.38233 * 120.00465 * 0.46388 * 25 24 23 27 27 C 1.38236 * 119.99816 * 359.76805 * 26 25 24 28 28 C 1.38240 * 119.99689 * 90.00113 * 23 22 21 29 29 C 1.38726 * 119.88971 * 359.97438 * 20 19 18 30 30 C 1.38146 * 119.94298 * 0.02562 * 29 20 19 31 31 H 0.96994 * 119.99682 * 0.02562 * 1 2 3 32 32 H 0.97004 * 119.99453 * 0.02562 * 9 7 2 33 33 H 1.08998 * 117.51417 * 359.97438 * 14 12 10 34 34 H 1.09001 * 117.51110 * 214.95947 * 14 12 10 35 35 H 1.07993 * 119.97145 * 359.97438 * 18 17 15 36 36 H 1.08000 * 120.02832 * 179.97438 * 19 18 17 37 37 H 1.09000 * 109.47202 * 299.99846 * 22 21 20 38 38 H 1.08999 * 109.47281 * 59.99918 * 22 21 20 39 39 H 1.07998 * 120.00103 * 359.97438 * 24 23 22 40 40 H 1.08005 * 119.99344 * 180.25018 * 25 24 23 41 41 H 1.07997 * 120.00135 * 179.79201 * 26 25 24 42 42 H 1.07992 * 120.00321 * 180.02562 * 27 26 25 43 43 H 1.07996 * 120.00224 * 359.97438 * 28 23 22 44 44 H 1.07998 * 120.02970 * 179.97438 * 29 20 19 45 45 H 1.08004 * 119.96748 * 180.02562 * 30 29 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 2.4956 2.0465 -1.4001 5 1 1.4456 2.6526 0.7001 6 1 3.5457 1.4401 0.6999 7 6 2.0089 -1.2033 -0.0005 8 1 3.0889 -1.2033 -0.0001 9 7 1.3234 -2.3907 -0.0005 10 6 1.9973 -3.5578 -0.0005 11 8 3.2102 -3.5579 -0.0010 12 6 1.2439 -4.8630 -0.0011 13 1 0.3050 -4.8643 0.5529 14 6 1.3195 -5.7226 -1.2654 15 6 2.0659 -6.1533 -0.0017 16 1 1.6684 -7.0036 0.5525 17 6 3.5671 -6.0219 -0.0022 18 6 4.3074 -6.5603 1.0340 19 6 5.6837 -6.4407 1.0361 20 6 6.3230 -5.7802 -0.0030 21 8 7.6763 -5.6564 -0.0004 22 6 8.2666 -4.9646 -1.1026 23 6 9.7630 -4.9261 -0.9284 24 6 10.3538 -3.8724 -0.2563 25 6 11.7261 -3.8395 -0.0927 26 6 12.5084 -4.8552 -0.6095 27 6 11.9181 -5.9064 -1.2858 28 6 10.5454 -5.9417 -1.4457 29 6 5.5780 -5.2418 -1.0420 30 6 4.2020 -5.3640 -1.0395 31 1 -0.4849 0.8400 -0.0004 32 1 0.3534 -2.3906 -0.0005 33 1 1.9139 -5.3441 -2.0969 34 1 0.4307 -6.2894 -1.5428 35 1 3.8093 -7.0740 1.8428 36 1 6.2615 -6.8611 1.8459 37 1 8.0216 -5.4824 -2.0299 38 1 7.8795 -3.9464 -1.1419 39 1 9.7430 -3.0766 0.1436 40 1 12.1872 -3.0183 0.4359 41 1 13.5808 -4.8277 -0.4846 42 1 12.5291 -6.7002 -1.6892 43 1 10.0842 -6.7628 -1.9742 44 1 6.0733 -4.7267 -1.8519 45 1 3.6216 -4.9454 -1.8484 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000072280794.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:00:09 Heat of formation + Delta-G solvation = 10.370305 kcal Electronic energy + Delta-G solvation = -27504.158139 eV Core-core repulsion = 23645.858785 eV Total energy + Delta-G solvation = -3858.299354 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 337.146 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.13410 -39.46531 -38.67474 -37.02132 -35.38077 -33.79468 -32.32082 -31.21384 -31.11151 -30.47234 -29.18878 -26.51151 -25.55742 -23.29842 -22.84875 -22.79141 -22.36656 -21.06207 -20.18574 -18.81435 -18.00163 -17.68427 -17.16137 -16.52533 -15.96369 -15.70405 -15.01107 -14.90850 -14.57362 -14.49773 -14.34535 -13.98527 -13.73303 -13.60468 -13.43066 -13.11287 -12.96179 -12.87441 -12.51061 -12.31368 -12.17682 -11.64499 -11.58735 -11.29521 -11.23368 -11.13241 -10.95965 -10.89730 -10.40119 -10.38839 -10.24874 -9.98184 -9.87938 -9.46373 -9.12642 -9.05680 -8.63718 -8.18585 -7.92790 -7.20173 -6.43280 -3.82825 1.02773 1.19743 1.89818 2.00501 3.14766 3.24722 3.27532 3.30559 3.61912 3.86379 4.14477 4.26005 4.55540 4.60590 4.62567 4.79455 4.81075 4.90986 5.07716 5.09769 5.19952 5.25494 5.28521 5.36233 5.39778 5.43963 5.45311 5.53914 5.69146 5.74800 5.81368 5.83361 5.94475 5.97102 6.15201 6.16565 6.22393 6.28334 6.38920 6.39469 6.48365 6.57564 6.76043 6.78466 6.92647 7.22232 7.25705 7.53565 7.80604 8.05442 8.61314 9.17033 9.55475 10.08061 10.74293 Molecular weight = 337.15amu Principal moments of inertia in cm(-1) A = 0.010068 B = 0.002865 C = 0.002313 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2780.323235 B = 9772.321641 C =12102.756485 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.022 3.978 3 Si 0.928 3.072 4 H -0.278 1.278 5 H -0.283 1.283 6 H -0.270 1.270 7 C -0.297 4.297 8 H 0.103 0.897 9 N -0.556 5.556 10 C 0.462 3.538 11 O -0.573 6.573 12 C -0.161 4.161 13 H 0.112 0.888 14 C -0.160 4.160 15 C -0.086 4.086 16 H 0.110 0.890 17 C -0.068 4.068 18 C -0.078 4.078 19 C -0.166 4.166 20 C 0.120 3.880 21 O -0.315 6.315 22 C 0.101 3.899 23 C -0.089 4.089 24 C -0.095 4.095 25 C -0.124 4.124 26 C -0.115 4.115 27 C -0.126 4.126 28 C -0.097 4.097 29 C -0.214 4.214 30 C 0.006 3.994 31 H 0.271 0.729 32 H 0.392 0.608 33 H 0.098 0.902 34 H 0.098 0.902 35 H 0.118 0.882 36 H 0.119 0.881 37 H 0.068 0.932 38 H 0.072 0.928 39 H 0.126 0.874 40 H 0.124 0.876 41 H 0.122 0.878 42 H 0.123 0.877 43 H 0.124 0.876 44 H 0.117 0.883 45 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.330 -12.879 -2.949 19.492 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.179 4.179 3 Si 0.755 3.245 4 H -0.204 1.204 5 H -0.209 1.209 6 H -0.194 1.194 7 C -0.426 4.426 8 H 0.120 0.880 9 N -0.191 5.191 10 C 0.248 3.752 11 O -0.458 6.458 12 C -0.183 4.183 13 H 0.130 0.870 14 C -0.197 4.197 15 C -0.105 4.105 16 H 0.128 0.872 17 C -0.068 4.068 18 C -0.096 4.096 19 C -0.185 4.185 20 C 0.076 3.924 21 O -0.230 6.230 22 C 0.026 3.974 23 C -0.090 4.090 24 C -0.113 4.113 25 C -0.142 4.142 26 C -0.133 4.133 27 C -0.144 4.144 28 C -0.115 4.115 29 C -0.233 4.233 30 C -0.012 4.012 31 H 0.081 0.919 32 H 0.225 0.775 33 H 0.116 0.884 34 H 0.116 0.884 35 H 0.136 0.864 36 H 0.137 0.863 37 H 0.086 0.914 38 H 0.090 0.910 39 H 0.144 0.856 40 H 0.142 0.858 41 H 0.140 0.860 42 H 0.141 0.859 43 H 0.142 0.858 44 H 0.134 0.866 45 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 15.135 -12.739 -2.802 19.980 hybrid contribution -0.467 1.266 -0.058 1.350 sum 14.669 -11.473 -2.860 18.841 Atomic orbital electron populations 1.69617 1.05933 1.28156 1.50407 1.25263 0.95616 0.99719 0.97349 0.85882 0.79285 0.80914 0.78372 1.20418 1.20896 1.19430 1.19698 0.93324 0.82239 1.47381 0.87952 1.41891 1.09233 1.04514 1.63464 1.19036 0.87773 0.83861 0.84537 1.90565 1.13210 1.86210 1.55818 1.22312 1.01058 0.92092 1.02835 0.87031 1.23046 1.02292 1.02559 0.91814 1.20897 0.90876 0.97138 1.01591 0.87173 1.18673 0.92493 1.00184 0.95457 1.20508 0.92500 0.99303 0.97307 1.20071 0.94051 1.05576 0.98823 1.18850 0.81326 0.96961 0.95255 1.86060 1.18471 1.73247 1.45192 1.21502 0.89098 0.97539 0.89225 1.19595 0.93796 0.95728 0.99838 1.21177 0.95076 0.98098 0.96964 1.21174 0.93725 0.99057 1.00243 1.21207 0.99877 0.94412 0.97817 1.21139 0.94725 0.98709 0.99810 1.21099 0.93801 0.97519 0.99102 1.20959 0.95183 1.06947 1.00219 1.20474 0.92743 0.91090 0.96873 0.91863 0.77460 0.88350 0.88356 0.86359 0.86300 0.91379 0.91029 0.85588 0.85799 0.86026 0.85898 0.85824 0.86556 0.86685 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.50 13.05 55.50 0.72 -23.78 16 2 C 0.02 0.60 5.50 -17.47 -0.10 0.50 16 3 Si 0.93 21.08 29.55 -169.99 -5.02 16.06 16 4 H -0.28 -6.23 7.11 56.52 0.40 -5.82 16 5 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 6 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 7 C -0.30 -8.21 9.68 -14.93 -0.14 -8.35 16 8 H 0.10 2.97 7.16 -52.49 -0.38 2.60 16 9 N -0.56 -14.03 5.29 -10.97 -0.06 -14.09 16 10 C 0.46 10.67 7.42 -10.99 -0.08 10.59 16 11 O -0.57 -14.55 11.28 5.55 0.06 -14.49 16 12 C -0.16 -2.85 6.19 -91.74 -0.57 -3.41 16 13 H 0.11 1.76 8.14 -51.92 -0.42 1.33 16 14 C -0.16 -2.34 9.58 -26.72 -0.26 -2.60 16 15 C -0.09 -1.34 6.04 -91.80 -0.55 -1.90 16 16 H 0.11 1.41 8.14 -51.93 -0.42 0.98 16 17 C -0.07 -1.19 4.37 -104.60 -0.46 -1.64 16 18 C -0.08 -1.28 9.73 -39.60 -0.39 -1.66 16 19 C -0.17 -2.77 9.99 -39.43 -0.39 -3.16 16 20 C 0.12 2.07 6.69 -39.22 -0.26 1.81 16 21 O -0.31 -5.04 10.12 -19.43 -0.20 -5.23 16 22 C 0.10 1.32 4.87 36.01 0.18 1.50 16 23 C -0.09 -1.07 5.51 -104.62 -0.58 -1.65 16 24 C -0.10 -1.08 9.70 -39.58 -0.38 -1.47 16 25 C -0.12 -1.20 10.05 -39.58 -0.40 -1.60 16 26 C -0.12 -1.02 10.05 -39.58 -0.40 -1.42 16 27 C -0.13 -1.14 10.05 -39.58 -0.40 -1.54 16 28 C -0.10 -1.01 9.70 -39.58 -0.38 -1.40 16 29 C -0.21 -3.75 9.04 -39.43 -0.36 -4.10 16 30 C 0.01 0.12 6.16 -39.61 -0.24 -0.13 16 31 H 0.27 7.00 8.31 -40.82 -0.34 6.66 16 32 H 0.39 9.59 7.90 -40.82 -0.32 9.26 16 33 H 0.10 1.52 6.17 -51.93 -0.32 1.20 16 34 H 0.10 1.16 8.14 -51.93 -0.42 0.74 16 35 H 0.12 1.63 8.06 -52.49 -0.42 1.21 16 36 H 0.12 1.76 8.06 -52.49 -0.42 1.33 16 37 H 0.07 0.78 7.61 -51.93 -0.40 0.39 16 38 H 0.07 0.95 7.59 -51.93 -0.39 0.55 16 39 H 0.13 1.37 8.06 -52.49 -0.42 0.95 16 40 H 0.12 0.94 8.06 -52.48 -0.42 0.52 16 41 H 0.12 0.78 8.06 -52.49 -0.42 0.35 16 42 H 0.12 0.82 8.06 -52.49 -0.42 0.40 16 43 H 0.12 1.11 8.06 -52.49 -0.42 0.69 16 44 H 0.12 1.82 6.30 -52.49 -0.33 1.49 16 45 H 0.12 2.13 5.77 -52.48 -0.30 1.83 16 LS Contribution 378.55 15.07 5.70 5.70 Total: -1.00 -31.69 378.55 -10.75 -42.44 By element: Atomic # 1 Polarization: 20.82 SS G_CDS: -5.80 Total: 15.02 kcal Atomic # 6 Polarization: -15.47 SS G_CDS: -6.16 Total: -21.63 kcal Atomic # 7 Polarization: -38.53 SS G_CDS: 0.67 Total: -37.87 kcal Atomic # 8 Polarization: -19.59 SS G_CDS: -0.13 Total: -19.72 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -5.02 Total: 16.06 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -31.69 -10.75 -42.44 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000072280794.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.812 kcal (2) G-P(sol) polarization free energy of solvation -31.689 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.123 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.753 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.442 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.370 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds