Wall clock time and date at job start Tue Mar 31 2020 06:00:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31417 * 1 3 3 Si 1.86796 * 119.99931 * 2 1 4 4 H 1.48505 * 109.47357 * 270.00076 * 3 2 1 5 5 H 1.48499 * 109.47197 * 30.00198 * 3 2 1 6 6 H 1.48498 * 109.47175 * 150.00407 * 3 2 1 7 7 C 1.38946 * 119.99957 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00087 * 180.02562 * 7 2 1 9 9 N 1.37102 * 120.00349 * 359.97438 * 7 2 1 10 10 C 1.34770 * 120.00399 * 180.02562 * 9 7 2 11 11 O 1.21290 * 120.00147 * 359.97438 * 10 9 7 12 12 C 1.50697 * 120.00347 * 180.02562 * 10 9 7 13 13 H 1.09009 * 115.55756 * 325.68615 * 12 10 9 14 14 C 1.53072 * 117.51642 * 111.38693 * 12 10 9 15 15 C 1.52994 * 117.50223 * 179.97438 * 12 10 9 16 16 H 1.09002 * 117.50202 * 144.99623 * 15 12 10 17 17 C 1.50697 * 117.49802 * 359.97438 * 15 12 10 18 18 C 1.38270 * 119.94382 * 120.09017 * 17 15 12 19 19 C 1.38143 * 120.05378 * 180.02562 * 18 17 15 20 20 C 1.38735 * 119.94455 * 359.97438 * 19 18 17 21 21 O 1.35903 * 120.05503 * 179.72940 * 20 19 18 22 22 C 1.42895 * 117.00049 * 179.97438 * 21 20 19 23 23 C 1.50700 * 109.47240 * 179.97438 * 22 21 20 24 24 C 1.38238 * 120.00081 * 269.72838 * 23 22 21 25 25 C 1.38239 * 119.99526 * 179.78754 * 24 23 22 26 26 C 1.38233 * 120.00465 * 0.46388 * 25 24 23 27 27 C 1.38236 * 119.99816 * 359.76805 * 26 25 24 28 28 C 1.38240 * 119.99689 * 90.00113 * 23 22 21 29 29 C 1.38726 * 119.88971 * 359.97438 * 20 19 18 30 30 C 1.38146 * 119.94298 * 0.02562 * 29 20 19 31 31 H 0.96994 * 119.99682 * 0.02562 * 1 2 3 32 32 H 0.97004 * 119.99453 * 0.02562 * 9 7 2 33 33 H 1.08998 * 117.51417 * 359.97438 * 14 12 10 34 34 H 1.09001 * 117.51110 * 214.95947 * 14 12 10 35 35 H 1.07993 * 119.97145 * 359.97438 * 18 17 15 36 36 H 1.08000 * 120.02832 * 179.97438 * 19 18 17 37 37 H 1.09000 * 109.47202 * 299.99846 * 22 21 20 38 38 H 1.08999 * 109.47281 * 59.99918 * 22 21 20 39 39 H 1.07998 * 120.00103 * 359.97438 * 24 23 22 40 40 H 1.08005 * 119.99344 * 180.25018 * 25 24 23 41 41 H 1.07997 * 120.00135 * 179.79201 * 26 25 24 42 42 H 1.07992 * 120.00321 * 180.02562 * 27 26 25 43 43 H 1.07996 * 120.00224 * 359.97438 * 28 23 22 44 44 H 1.07998 * 120.02970 * 179.97438 * 29 20 19 45 45 H 1.08004 * 119.96748 * 180.02562 * 30 29 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 2.4956 2.0465 -1.4001 5 1 1.4456 2.6526 0.7001 6 1 3.5457 1.4401 0.6999 7 6 2.0089 -1.2033 -0.0005 8 1 3.0889 -1.2033 -0.0001 9 7 1.3234 -2.3907 -0.0005 10 6 1.9973 -3.5578 -0.0005 11 8 3.2102 -3.5579 -0.0010 12 6 1.2439 -4.8630 -0.0011 13 1 0.3050 -4.8643 0.5529 14 6 1.3195 -5.7226 -1.2654 15 6 2.0659 -6.1533 -0.0017 16 1 1.6684 -7.0036 0.5525 17 6 3.5671 -6.0219 -0.0022 18 6 4.3074 -6.5603 1.0340 19 6 5.6837 -6.4407 1.0361 20 6 6.3230 -5.7802 -0.0030 21 8 7.6763 -5.6564 -0.0004 22 6 8.2666 -4.9646 -1.1026 23 6 9.7630 -4.9261 -0.9284 24 6 10.3538 -3.8724 -0.2563 25 6 11.7261 -3.8395 -0.0927 26 6 12.5084 -4.8552 -0.6095 27 6 11.9181 -5.9064 -1.2858 28 6 10.5454 -5.9417 -1.4457 29 6 5.5780 -5.2418 -1.0420 30 6 4.2020 -5.3640 -1.0395 31 1 -0.4849 0.8400 -0.0004 32 1 0.3534 -2.3906 -0.0005 33 1 1.9139 -5.3441 -2.0969 34 1 0.4307 -6.2894 -1.5428 35 1 3.8093 -7.0740 1.8428 36 1 6.2615 -6.8611 1.8459 37 1 8.0216 -5.4824 -2.0299 38 1 7.8795 -3.9464 -1.1419 39 1 9.7430 -3.0766 0.1436 40 1 12.1872 -3.0183 0.4359 41 1 13.5808 -4.8277 -0.4846 42 1 12.5291 -6.7002 -1.6892 43 1 10.0842 -6.7628 -1.9742 44 1 6.0733 -4.7267 -1.8519 45 1 3.6216 -4.9454 -1.8484 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000072280794.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:00:08 Heat of formation + Delta-G solvation = -5.806304 kcal Electronic energy + Delta-G solvation = -27504.859609 eV Core-core repulsion = 23645.858785 eV Total energy + Delta-G solvation = -3859.000824 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 337.146 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.40818 -40.65447 -39.85065 -38.48848 -36.77389 -35.73860 -33.30769 -33.11335 -31.86944 -31.79348 -30.46563 -27.65005 -27.33168 -24.60694 -24.43178 -23.55611 -23.51442 -22.02630 -21.51697 -20.53249 -19.70075 -19.18473 -18.22494 -17.78840 -17.00807 -16.86281 -16.64091 -16.17223 -15.88976 -15.77187 -15.55761 -15.49013 -15.36356 -14.85966 -14.38560 -14.34590 -14.28686 -14.06209 -13.75364 -13.66042 -13.37154 -13.27166 -12.99039 -12.91823 -12.42701 -12.35756 -12.21300 -12.13336 -12.02404 -11.91174 -11.69304 -11.49547 -11.22422 -11.08881 -10.27980 -9.99389 -9.89727 -9.86074 -9.57211 -8.62035 -8.45542 -5.93358 0.21580 0.42709 0.57152 0.65029 1.34618 1.38041 1.50473 1.98901 2.27311 2.27814 2.78892 2.95951 3.15751 3.19928 3.38284 3.67761 3.77710 3.85547 3.97997 4.03386 4.10491 4.10759 4.15537 4.19700 4.23246 4.26970 4.39053 4.53793 4.56676 4.60801 4.67223 4.70484 4.82497 4.95234 4.97694 5.01381 5.08433 5.19529 5.25496 5.40987 5.46001 5.49456 5.53867 5.57716 5.58886 5.89604 5.97706 6.02032 6.02293 6.53015 6.62402 7.14727 7.61465 8.18283 8.71170 Molecular weight = 337.15amu Principal moments of inertia in cm(-1) A = 0.010068 B = 0.002865 C = 0.002313 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2780.323235 B = 9772.321641 C =12102.756485 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C -0.015 4.015 3 Si 0.988 3.012 4 H -0.271 1.271 5 H -0.271 1.271 6 H -0.275 1.275 7 C -0.325 4.325 8 H 0.077 0.923 9 N -0.573 5.573 10 C 0.461 3.539 11 O -0.600 6.600 12 C -0.182 4.182 13 H 0.135 0.865 14 C -0.139 4.139 15 C -0.077 4.077 16 H 0.149 0.851 17 C -0.086 4.086 18 C -0.079 4.079 19 C -0.176 4.176 20 C 0.110 3.890 21 O -0.324 6.324 22 C 0.101 3.899 23 C -0.111 4.111 24 C -0.117 4.117 25 C -0.130 4.130 26 C -0.113 4.113 27 C -0.126 4.126 28 C -0.107 4.107 29 C -0.229 4.229 30 C -0.013 4.013 31 H 0.276 0.724 32 H 0.394 0.606 33 H 0.083 0.917 34 H 0.139 0.861 35 H 0.149 0.851 36 H 0.136 0.864 37 H 0.079 0.921 38 H 0.059 0.941 39 H 0.118 0.882 40 H 0.143 0.857 41 H 0.152 0.848 42 H 0.151 0.849 43 H 0.134 0.866 44 H 0.122 0.878 45 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.054 -14.367 -2.698 20.984 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.563 5.563 2 C -0.214 4.214 3 Si 0.812 3.188 4 H -0.196 1.196 5 H -0.196 1.196 6 H -0.200 1.200 7 C -0.455 4.455 8 H 0.095 0.905 9 N -0.209 5.209 10 C 0.249 3.751 11 O -0.486 6.486 12 C -0.203 4.203 13 H 0.153 0.847 14 C -0.176 4.176 15 C -0.095 4.095 16 H 0.167 0.833 17 C -0.086 4.086 18 C -0.097 4.097 19 C -0.195 4.195 20 C 0.066 3.934 21 O -0.239 6.239 22 C 0.026 3.974 23 C -0.112 4.112 24 C -0.135 4.135 25 C -0.147 4.147 26 C -0.131 4.131 27 C -0.143 4.143 28 C -0.125 4.125 29 C -0.247 4.247 30 C -0.031 4.031 31 H 0.086 0.914 32 H 0.227 0.773 33 H 0.102 0.898 34 H 0.157 0.843 35 H 0.167 0.833 36 H 0.154 0.846 37 H 0.098 0.902 38 H 0.078 0.922 39 H 0.136 0.864 40 H 0.161 0.839 41 H 0.170 0.830 42 H 0.169 0.831 43 H 0.152 0.848 44 H 0.140 0.860 45 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 15.855 -14.244 -2.560 21.466 hybrid contribution -0.544 1.644 -0.156 1.739 sum 15.310 -12.599 -2.715 20.013 Atomic orbital electron populations 1.69679 1.06762 1.29100 1.50752 1.25985 0.96499 1.02271 0.96657 0.84996 0.77860 0.77295 0.78610 1.19636 1.19550 1.20038 1.19604 0.92499 0.84070 1.49332 0.90527 1.41971 1.09197 1.04670 1.65054 1.20067 0.87870 0.85199 0.81988 1.90564 1.14808 1.87126 1.56118 1.22235 1.02010 0.89755 1.06309 0.84707 1.23185 1.03242 1.00758 0.90459 1.21136 0.89474 0.96641 1.02242 0.83299 1.19011 0.94003 1.00184 0.95410 1.20892 0.92464 0.98770 0.97606 1.20433 0.94687 1.05315 0.99047 1.19051 0.81948 0.97027 0.95383 1.86049 1.17870 1.73503 1.46498 1.21613 0.90074 0.96717 0.88967 1.19622 0.92994 0.97003 1.01537 1.21292 0.96214 0.98158 0.97827 1.21459 0.93008 1.00064 1.00203 1.21613 1.01374 0.93571 0.96531 1.21512 0.94287 0.99423 0.99127 1.21312 0.94664 0.97371 0.99152 1.21124 0.95329 1.07387 1.00901 1.20547 0.93087 0.92067 0.97428 0.91431 0.77288 0.89833 0.84310 0.83342 0.84605 0.90242 0.92245 0.86373 0.83899 0.83045 0.83116 0.84821 0.86026 0.87912 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -50.58 13.05 21.66 0.28 -50.30 16 2 C -0.01 -0.80 5.50 84.92 0.47 -0.33 16 3 Si 0.99 43.81 29.55 68.60 2.03 45.84 16 4 H -0.27 -11.62 7.11 99.48 0.71 -10.91 16 5 H -0.27 -11.37 7.11 99.48 0.71 -10.67 16 6 H -0.28 -12.34 7.11 99.48 0.71 -11.63 16 7 C -0.33 -18.64 9.68 84.04 0.81 -17.83 16 8 H 0.08 4.69 7.16 -2.91 -0.02 4.67 16 9 N -0.57 -29.70 5.29 -307.00 -1.62 -31.33 16 10 C 0.46 21.67 7.42 87.66 0.65 22.32 16 11 O -0.60 -31.52 11.28 -3.06 -0.03 -31.56 16 12 C -0.18 -6.15 6.19 -11.52 -0.07 -6.22 16 13 H 0.14 3.92 8.14 -2.38 -0.02 3.90 16 14 C -0.14 -3.77 9.58 30.60 0.29 -3.48 16 15 C -0.08 -2.19 6.04 -11.56 -0.07 -2.26 16 16 H 0.15 3.11 8.14 -2.39 -0.02 3.09 16 17 C -0.09 -2.94 4.37 -19.85 -0.09 -3.03 16 18 C -0.08 -2.50 9.73 22.25 0.22 -2.28 16 19 C -0.18 -5.79 9.99 22.37 0.22 -5.57 16 20 C 0.11 3.90 6.69 22.51 0.15 4.05 16 21 O -0.32 -10.71 10.12 -92.45 -0.94 -11.65 16 22 C 0.10 2.78 4.87 71.24 0.35 3.12 16 23 C -0.11 -2.74 5.51 -19.86 -0.11 -2.85 16 24 C -0.12 -2.74 9.70 22.27 0.22 -2.52 16 25 C -0.13 -2.38 10.05 22.27 0.22 -2.16 16 26 C -0.11 -1.74 10.05 22.27 0.22 -1.52 16 27 C -0.13 -2.02 10.05 22.27 0.22 -1.79 16 28 C -0.11 -2.16 9.70 22.27 0.22 -1.95 16 29 C -0.23 -8.36 9.04 22.36 0.20 -8.15 16 30 C -0.01 -0.49 6.16 22.25 0.14 -0.35 16 31 H 0.28 14.21 8.31 -92.71 -0.77 13.44 16 32 H 0.39 19.68 7.90 -92.71 -0.73 18.95 16 33 H 0.08 2.54 6.17 -2.39 -0.01 2.53 16 34 H 0.14 2.68 8.14 -2.39 -0.02 2.66 16 35 H 0.15 3.66 8.06 -2.91 -0.02 3.63 16 36 H 0.14 3.88 8.06 -2.91 -0.02 3.86 16 37 H 0.08 1.93 7.61 -2.39 -0.02 1.92 16 38 H 0.06 1.73 7.59 -2.39 -0.02 1.71 16 39 H 0.12 2.80 8.06 -2.91 -0.02 2.78 16 40 H 0.14 1.97 8.06 -2.91 -0.02 1.95 16 41 H 0.15 1.40 8.06 -2.91 -0.02 1.37 16 42 H 0.15 1.53 8.06 -2.91 -0.02 1.50 16 43 H 0.13 2.31 8.06 -2.91 -0.02 2.29 16 44 H 0.12 4.10 6.30 -2.91 -0.02 4.08 16 45 H 0.10 4.01 5.77 -2.91 -0.02 4.00 16 Total: -1.00 -70.94 378.55 4.27 -66.67 By element: Atomic # 1 Polarization: 44.82 SS G_CDS: 0.29 Total: 45.11 kcal Atomic # 6 Polarization: -37.05 SS G_CDS: 4.27 Total: -32.79 kcal Atomic # 7 Polarization: -80.28 SS G_CDS: -1.34 Total: -81.62 kcal Atomic # 8 Polarization: -42.24 SS G_CDS: -0.97 Total: -43.21 kcal Atomic # 14 Polarization: 43.81 SS G_CDS: 2.03 Total: 45.84 kcal Total: -70.94 4.27 -66.67 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000072280794.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.862 kcal (2) G-P(sol) polarization free energy of solvation -70.941 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.079 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.273 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.669 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.806 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds