Wall clock time and date at job start Tue Mar 31 2020 06:00:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31407 * 1 3 3 Si 1.86799 * 120.00197 * 2 1 4 4 H 1.48498 * 109.47291 * 270.00110 * 3 2 1 5 5 H 1.48497 * 109.46817 * 29.99976 * 3 2 1 6 6 H 1.48499 * 109.47026 * 150.00126 * 3 2 1 7 7 C 1.38950 * 119.99949 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00136 * 0.02562 * 7 2 1 9 9 N 1.37092 * 120.00243 * 180.02562 * 7 2 1 10 10 C 1.34773 * 120.00051 * 180.02562 * 9 7 2 11 11 O 1.21294 * 120.00259 * 359.97438 * 10 9 7 12 12 C 1.50704 * 119.99894 * 179.97438 * 10 9 7 13 13 H 1.09004 * 115.56216 * 325.68994 * 12 10 9 14 14 C 1.53078 * 117.49137 * 111.39712 * 12 10 9 15 15 C 1.53003 * 59.98542 * 107.48634 * 14 12 10 16 16 H 1.08992 * 117.49655 * 252.49771 * 15 14 12 17 17 C 1.50697 * 117.50027 * 107.49887 * 15 14 12 18 18 C 1.38264 * 119.94347 * 171.25613 * 17 15 14 19 19 C 1.38148 * 120.05204 * 179.97438 * 18 17 15 20 20 C 1.38730 * 119.94851 * 359.97438 * 19 18 17 21 21 O 1.35894 * 120.05658 * 179.97438 * 20 19 18 22 22 C 1.42906 * 117.00187 * 180.02562 * 21 20 19 23 23 C 1.50693 * 109.47463 * 180.02562 * 22 21 20 24 24 C 1.38233 * 120.00207 * 89.99418 * 23 22 21 25 25 C 1.38234 * 120.00037 * 179.72405 * 24 23 22 26 26 C 1.38234 * 120.00240 * 0.26327 * 25 24 23 27 27 C 1.38238 * 119.99693 * 359.97438 * 26 25 24 28 28 C 1.38234 * 120.00067 * 0.02562 * 27 26 25 29 29 C 1.38735 * 119.88537 * 0.27860 * 20 19 18 30 30 C 1.38142 * 119.94467 * 359.46778 * 29 20 19 31 31 H 0.97000 * 120.00009 * 0.02562 * 1 2 3 32 32 H 0.96998 * 120.00114 * 359.97438 * 9 7 2 33 33 H 1.08997 * 117.49608 * 359.97438 * 14 12 10 34 34 H 1.09002 * 117.53046 * 214.95423 * 14 12 10 35 35 H 1.07998 * 119.97425 * 359.97438 * 18 17 15 36 36 H 1.08001 * 120.02287 * 179.97438 * 19 18 17 37 37 H 1.09000 * 109.46902 * 60.00273 * 22 21 20 38 38 H 1.09001 * 109.46622 * 300.00169 * 22 21 20 39 39 H 1.08002 * 120.00157 * 0.02562 * 24 23 22 40 40 H 1.07999 * 120.00009 * 180.28389 * 25 24 23 41 41 H 1.07997 * 120.00460 * 180.02562 * 26 25 24 42 42 H 1.08001 * 119.99624 * 180.02562 * 27 26 25 43 43 H 1.07999 * 120.00008 * 180.02562 * 28 27 26 44 44 H 1.08005 * 120.02471 * 179.72261 * 29 20 19 45 45 H 1.07997 * 119.97351 * 180.23532 * 30 29 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 2.4956 2.0464 -1.4000 5 1 1.4456 2.6526 0.7000 6 1 3.5457 1.4401 0.7000 7 6 2.0088 -1.2033 -0.0005 8 1 1.4688 -2.1387 -0.0014 9 7 3.3797 -1.2034 0.0000 10 6 4.0535 -2.3706 -0.0011 11 8 3.4471 -3.4211 -0.0020 12 6 5.5606 -2.3707 -0.0011 13 1 6.0309 -1.5579 -0.5546 14 6 6.2672 -2.8672 1.2628 15 6 6.2670 -3.7279 -0.0022 16 1 5.6418 -4.6206 -0.0033 17 6 7.5598 -3.8387 -0.7686 18 6 7.6691 -4.7408 -1.8107 19 6 8.8530 -4.8439 -2.5151 20 6 9.9326 -4.0411 -2.1765 21 8 11.0984 -4.1410 -2.8676 22 6 12.1679 -3.2837 -2.4634 23 6 13.3698 -3.5335 -3.3374 24 6 13.5387 -2.8105 -4.5035 25 6 14.6442 -3.0357 -5.3023 26 6 15.5780 -3.9876 -4.9379 27 6 15.4065 -4.7140 -3.7743 28 6 14.3010 -4.4889 -2.9755 29 6 9.8220 -3.1405 -1.1270 30 6 8.6343 -3.0374 -0.4290 31 1 -0.4850 0.8400 -0.0004 32 1 3.8648 -0.3634 0.0004 33 1 5.6418 -3.1932 2.0939 34 1 7.2026 -2.3815 1.5409 35 1 6.8283 -5.3652 -2.0743 36 1 8.9381 -5.5489 -3.3288 37 1 12.4250 -3.4888 -1.4242 38 1 11.8569 -2.2437 -2.5624 39 1 12.8095 -2.0664 -4.7879 40 1 14.7785 -2.4676 -6.2109 41 1 16.4419 -4.1632 -5.5617 42 1 16.1363 -5.4574 -3.4894 43 1 14.1673 -5.0561 -2.0662 44 1 10.6625 -2.5176 -0.8585 45 1 8.5465 -2.3339 0.3856 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000072280795.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:00:11 Heat of formation + Delta-G solvation = -14.582198 kcal Electronic energy + Delta-G solvation = -26323.883181 eV Core-core repulsion = 22464.501805 eV Total energy + Delta-G solvation = -3859.381376 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 337.146 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.40197 -40.69869 -39.98681 -38.81718 -36.88378 -35.91138 -33.76752 -33.19042 -31.95160 -31.82965 -30.62535 -27.78245 -27.33342 -24.64444 -24.37473 -23.52401 -23.51891 -22.02875 -21.44497 -21.12011 -20.00099 -19.25289 -18.25143 -17.83798 -17.01115 -16.97635 -16.74903 -16.50023 -15.98688 -15.73374 -15.59218 -15.50363 -15.30880 -14.87236 -14.50756 -14.45680 -14.30894 -14.19150 -13.92706 -13.66602 -13.61937 -13.30520 -13.06998 -13.01262 -12.45107 -12.40871 -12.30341 -12.02329 -11.99151 -11.89099 -11.75186 -11.58035 -11.32125 -11.23750 -10.50731 -10.28950 -9.94081 -9.85881 -9.82801 -8.96152 -8.44640 -6.05897 0.24716 0.38004 0.41354 0.46668 1.29108 1.33348 1.43490 1.78762 2.20975 2.25106 2.60041 2.85507 2.98536 3.03648 3.25603 3.68465 3.72271 3.84407 3.86693 3.89783 3.98145 4.06219 4.11439 4.23252 4.26232 4.28163 4.33988 4.36848 4.44497 4.56671 4.61681 4.71707 4.73874 4.78742 5.02270 5.03859 5.11729 5.11976 5.15090 5.33981 5.43079 5.51748 5.52384 5.58438 5.59781 5.73213 5.80793 5.91292 6.05425 6.45820 6.54572 6.82807 7.35482 7.91340 8.72776 Molecular weight = 337.15amu Principal moments of inertia in cm(-1) A = 0.020691 B = 0.001770 C = 0.001693 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1352.908540 B =15811.055204 C =16538.271469 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C -0.012 4.012 3 Si 0.964 3.036 4 H -0.257 1.257 5 H -0.272 1.272 6 H -0.231 1.231 7 C -0.334 4.334 8 H 0.055 0.945 9 N -0.582 5.582 10 C 0.475 3.525 11 O -0.629 6.629 12 C -0.173 4.173 13 H 0.142 0.858 14 C -0.128 4.128 15 C -0.082 4.082 16 H 0.097 0.903 17 C -0.093 4.093 18 C -0.081 4.081 19 C -0.159 4.159 20 C 0.116 3.884 21 O -0.325 6.325 22 C 0.098 3.902 23 C -0.112 4.112 24 C -0.110 4.110 25 C -0.132 4.132 26 C -0.117 4.117 27 C -0.132 4.132 28 C -0.109 4.109 29 C -0.202 4.202 30 C -0.076 4.076 31 H 0.281 0.719 32 H 0.391 0.609 33 H 0.090 0.910 34 H 0.143 0.857 35 H 0.128 0.872 36 H 0.135 0.865 37 H 0.085 0.915 38 H 0.082 0.918 39 H 0.130 0.870 40 H 0.142 0.858 41 H 0.144 0.856 42 H 0.143 0.857 43 H 0.133 0.867 44 H 0.154 0.846 45 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 37.209 -2.253 -5.738 37.716 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.211 4.211 3 Si 0.783 3.217 4 H -0.181 1.181 5 H -0.196 1.196 6 H -0.154 1.154 7 C -0.463 4.463 8 H 0.074 0.926 9 N -0.221 5.221 10 C 0.263 3.737 11 O -0.515 6.515 12 C -0.194 4.194 13 H 0.159 0.841 14 C -0.165 4.165 15 C -0.100 4.100 16 H 0.115 0.885 17 C -0.093 4.093 18 C -0.100 4.100 19 C -0.177 4.177 20 C 0.071 3.929 21 O -0.239 6.239 22 C 0.023 3.977 23 C -0.112 4.112 24 C -0.128 4.128 25 C -0.150 4.150 26 C -0.135 4.135 27 C -0.150 4.150 28 C -0.127 4.127 29 C -0.220 4.220 30 C -0.094 4.094 31 H 0.090 0.910 32 H 0.226 0.774 33 H 0.109 0.891 34 H 0.161 0.839 35 H 0.146 0.854 36 H 0.153 0.847 37 H 0.103 0.897 38 H 0.100 0.900 39 H 0.148 0.852 40 H 0.159 0.841 41 H 0.162 0.838 42 H 0.161 0.839 43 H 0.150 0.850 44 H 0.171 0.829 45 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges 36.645 -2.949 -5.897 37.233 hybrid contribution -0.772 0.754 -0.040 1.080 sum 35.872 -2.195 -5.937 36.426 Atomic orbital electron populations 1.69797 1.08109 1.29390 1.49761 1.26121 0.96492 1.02709 0.95786 0.85380 0.79582 0.76678 0.80035 1.18136 1.19639 1.15425 1.19050 0.81422 0.95074 1.50762 0.92640 1.41968 1.05798 1.07520 1.66837 1.20036 0.89486 0.83183 0.80961 1.90522 1.71402 1.33041 1.56557 1.22231 0.89545 1.00905 1.06698 0.84062 1.23250 1.02237 1.00996 0.90044 1.20841 0.95163 0.93912 1.00134 0.88483 1.19048 0.93806 0.98945 0.97505 1.20928 0.96999 0.97789 0.94239 1.20498 0.91675 1.02370 1.03193 1.19113 0.86017 0.95608 0.92137 1.86121 1.19983 1.61023 1.56808 1.21760 0.83429 0.94304 0.98160 1.19655 0.95641 0.98950 0.96951 1.21330 0.98212 0.99643 0.93662 1.21472 0.94338 0.98823 1.00399 1.21588 0.99659 0.95392 0.96864 1.21482 0.98042 1.00342 0.95088 1.21332 0.94319 0.96473 1.00556 1.21434 1.00272 1.02176 0.98136 1.21095 0.91222 0.97867 0.99225 0.90992 0.77352 0.89122 0.83895 0.85410 0.84739 0.89700 0.89968 0.85200 0.84057 0.83777 0.83896 0.84955 0.82889 0.83147 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.45 13.96 21.66 0.30 -56.15 16 2 C -0.01 -0.67 5.50 84.93 0.47 -0.20 16 3 Si 0.96 39.15 27.74 68.60 1.90 41.06 16 4 H -0.26 -9.92 7.11 99.48 0.71 -9.22 16 5 H -0.27 -10.83 7.11 99.48 0.71 -10.12 16 6 H -0.23 -7.95 6.52 99.48 0.65 -7.30 16 7 C -0.33 -20.01 10.16 84.04 0.85 -19.16 16 8 H 0.06 3.94 7.39 -2.91 -0.02 3.92 16 9 N -0.58 -28.51 5.09 -306.98 -1.56 -30.07 16 10 C 0.47 22.49 7.57 87.66 0.66 23.16 16 11 O -0.63 -36.21 15.83 -3.07 -0.05 -36.26 16 12 C -0.17 -5.64 5.82 -11.51 -0.07 -5.70 16 13 H 0.14 3.78 8.14 -2.38 -0.02 3.76 16 14 C -0.13 -3.30 9.56 30.62 0.29 -3.00 16 15 C -0.08 -2.43 5.55 -11.54 -0.06 -2.49 16 16 H 0.10 3.43 7.67 -2.39 -0.02 3.41 16 17 C -0.09 -2.31 5.61 -19.85 -0.11 -2.42 16 18 C -0.08 -2.04 9.73 22.25 0.22 -1.82 16 19 C -0.16 -3.66 9.99 22.37 0.22 -3.43 16 20 C 0.12 2.46 6.69 22.51 0.15 2.61 16 21 O -0.32 -6.60 10.12 -92.35 -0.93 -7.53 16 22 C 0.10 1.37 4.86 71.23 0.35 1.71 16 23 C -0.11 -1.65 5.51 -19.87 -0.11 -1.76 16 24 C -0.11 -1.53 9.70 22.27 0.22 -1.31 16 25 C -0.13 -1.53 10.05 22.27 0.22 -1.31 16 26 C -0.12 -1.22 10.05 22.27 0.22 -1.00 16 27 C -0.13 -1.46 10.05 22.27 0.22 -1.24 16 28 C -0.11 -1.44 9.70 22.27 0.22 -1.22 16 29 C -0.20 -3.59 9.04 22.37 0.20 -3.39 16 30 C -0.08 -1.49 9.29 22.25 0.21 -1.28 16 31 H 0.28 15.49 8.31 -92.71 -0.77 14.72 16 32 H 0.39 15.93 5.76 -92.71 -0.53 15.39 16 33 H 0.09 2.59 8.14 -2.39 -0.02 2.57 16 34 H 0.14 2.42 6.18 -2.39 -0.01 2.41 16 35 H 0.13 3.17 8.06 -2.91 -0.02 3.14 16 36 H 0.13 2.81 8.06 -2.91 -0.02 2.79 16 37 H 0.08 0.92 7.60 -2.39 -0.02 0.90 16 38 H 0.08 0.94 7.62 -2.39 -0.02 0.92 16 39 H 0.13 1.53 8.06 -2.91 -0.02 1.50 16 40 H 0.14 1.04 8.06 -2.91 -0.02 1.02 16 41 H 0.14 0.81 8.06 -2.91 -0.02 0.78 16 42 H 0.14 0.94 8.06 -2.91 -0.02 0.92 16 43 H 0.13 1.41 8.06 -2.91 -0.02 1.39 16 44 H 0.15 1.82 6.30 -2.91 -0.02 1.80 16 45 H 0.15 2.16 6.02 -2.91 -0.02 2.14 16 Total: -1.00 -79.83 383.41 4.46 -75.36 By element: Atomic # 1 Polarization: 36.42 SS G_CDS: 0.43 Total: 36.85 kcal Atomic # 6 Polarization: -27.63 SS G_CDS: 4.37 Total: -23.26 kcal Atomic # 7 Polarization: -84.96 SS G_CDS: -1.26 Total: -86.22 kcal Atomic # 8 Polarization: -42.80 SS G_CDS: -0.98 Total: -43.79 kcal Atomic # 14 Polarization: 39.15 SS G_CDS: 1.90 Total: 41.06 kcal Total: -79.83 4.46 -75.36 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000072280795.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.782 kcal (2) G-P(sol) polarization free energy of solvation -79.826 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.044 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.462 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.364 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.582 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds