Wall clock time and date at job start Tue Mar 31 2020 06:00:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31411 * 1 3 3 Si 1.86801 * 119.99756 * 2 1 4 4 H 1.48503 * 109.46749 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47311 * 300.00020 * 3 2 1 6 6 H 1.48501 * 109.46862 * 60.00330 * 3 2 1 7 7 C 1.38946 * 119.99845 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99829 * 180.02562 * 7 2 1 9 9 N 1.37095 * 120.00300 * 359.97438 * 7 2 1 10 10 C 1.34778 * 120.00363 * 180.02562 * 9 7 2 11 11 O 1.21300 * 119.99671 * 0.02562 * 10 9 7 12 12 C 1.50693 * 120.00264 * 180.02562 * 10 9 7 13 13 H 1.08995 * 115.56374 * 34.31670 * 12 10 9 14 14 C 1.52999 * 117.50064 * 248.62816 * 12 10 9 15 15 C 1.53001 * 117.49880 * 180.02562 * 12 10 9 16 16 H 1.09002 * 117.49822 * 0.02562 * 15 12 10 17 17 C 1.50701 * 117.51956 * 214.97025 * 15 12 10 18 18 C 1.38263 * 119.94313 * 299.85143 * 17 15 12 19 19 C 1.38152 * 120.05240 * 179.72597 * 18 17 15 20 20 C 1.38731 * 119.94089 * 0.56105 * 19 18 17 21 21 O 1.35903 * 120.05045 * 179.68735 * 20 19 18 22 22 C 1.42898 * 117.00477 * 0.02562 * 21 20 19 23 23 C 1.50698 * 109.47368 * 180.02562 * 22 21 20 24 24 C 1.38236 * 119.99992 * 269.72576 * 23 22 21 25 25 C 1.38234 * 119.99965 * 179.78817 * 24 23 22 26 26 C 1.38235 * 119.99783 * 0.44189 * 25 24 23 27 27 C 1.38229 * 120.00414 * 359.80978 * 26 25 24 28 28 C 1.38236 * 119.99926 * 89.99968 * 23 22 21 29 29 C 1.38722 * 119.89204 * 359.70968 * 20 19 18 30 30 C 1.38139 * 119.94633 * 359.97438 * 29 20 19 31 31 H 0.97004 * 120.00476 * 0.02562 * 1 2 3 32 32 H 0.97005 * 120.00267 * 0.02562 * 9 7 2 33 33 H 1.09004 * 117.50150 * 145.02538 * 14 12 10 34 34 H 1.09004 * 117.51638 * 359.97438 * 14 12 10 35 35 H 1.07998 * 119.97379 * 359.97304 * 18 17 15 36 36 H 1.08001 * 120.02653 * 180.29394 * 19 18 17 37 37 H 1.09003 * 109.46883 * 300.00164 * 22 21 20 38 38 H 1.08994 * 109.47160 * 59.99958 * 22 21 20 39 39 H 1.08000 * 119.99641 * 359.97438 * 24 23 22 40 40 H 1.07996 * 120.00054 * 180.27315 * 25 24 23 41 41 H 1.08002 * 119.99470 * 179.83502 * 26 25 24 42 42 H 1.08002 * 120.00263 * 179.97438 * 27 26 25 43 43 H 1.07996 * 120.00517 * 359.97438 * 28 23 22 44 44 H 1.08004 * 120.03177 * 180.02562 * 29 20 19 45 45 H 1.08004 * 119.97658 * 180.02562 * 30 29 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2480 1.6178 0.0000 4 1 3.7081 1.3464 0.0006 5 1 1.8893 2.3965 -1.2125 6 1 1.8893 2.3964 1.2126 7 6 2.0088 -1.2033 -0.0005 8 1 3.0888 -1.2033 -0.0001 9 7 1.3234 -2.3906 -0.0005 10 6 1.9972 -3.5579 -0.0005 11 8 3.2102 -3.5578 -0.0001 12 6 1.2438 -4.8629 -0.0011 13 1 0.3055 -4.8641 -0.5558 14 6 1.3183 -5.7223 1.2625 15 6 2.0659 -6.1533 -0.0005 16 1 3.1517 -6.0582 0.0008 17 6 1.5169 -7.3290 -0.7669 18 6 0.2881 -7.8627 -0.4251 19 6 -0.2198 -8.9370 -1.1298 20 6 0.5095 -9.4875 -2.1737 21 8 0.0148 -10.5482 -2.8643 22 6 -1.2629 -11.0456 -2.4620 23 6 -1.6449 -12.2135 -3.3344 24 6 -2.3579 -12.0018 -4.4996 25 6 -2.7045 -13.0727 -5.3020 26 6 -2.3459 -14.3562 -4.9346 27 6 -1.6374 -14.5685 -3.7668 28 6 -1.2871 -13.4971 -2.9665 29 6 1.7447 -8.9537 -2.5111 30 6 2.2453 -7.8754 -1.8076 31 1 -0.4851 0.8400 -0.0004 32 1 0.3533 -2.3907 -0.0005 33 1 0.4291 -6.2889 1.5391 34 1 1.9127 -5.3442 2.0943 35 1 -0.2769 -7.4370 0.3909 36 1 -1.1818 -9.3505 -0.8655 37 1 -1.2158 -11.3693 -1.4222 38 1 -2.0082 -10.2568 -2.5635 39 1 -2.6416 -10.9995 -4.7844 40 1 -3.2577 -12.9069 -6.2146 41 1 -2.6190 -15.1931 -5.5603 42 1 -1.3576 -15.5713 -3.4796 43 1 -0.7335 -13.6630 -2.0542 44 1 2.3142 -9.3802 -3.3236 45 1 3.2067 -7.4591 -2.0701 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000072280796.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:00:15 Heat of formation + Delta-G solvation = -2.623943 kcal Electronic energy + Delta-G solvation = -26247.843018 eV Core-core repulsion = 22388.980191 eV Total energy + Delta-G solvation = -3858.862827 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 337.146 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.48761 -39.58173 -38.81429 -37.55913 -35.51042 -33.83362 -32.58521 -31.32817 -31.19373 -31.02908 -29.60901 -26.83979 -25.57358 -23.60312 -23.03739 -23.01537 -22.53229 -21.36057 -20.27452 -18.90241 -18.39468 -17.81036 -17.40073 -16.64088 -16.30238 -16.00114 -15.29277 -15.24200 -14.87500 -14.73408 -14.63583 -13.96384 -13.82480 -13.79521 -13.66231 -13.44643 -13.17559 -13.03975 -12.76719 -12.60671 -12.39276 -11.70991 -11.59099 -11.54369 -11.48857 -11.26989 -11.15044 -11.12683 -10.82342 -10.35496 -10.27224 -10.05375 -9.99498 -9.51092 -9.33966 -9.28962 -9.00477 -8.45206 -7.98282 -7.94481 -6.42974 -3.83391 0.79368 0.98454 1.33866 1.38456 2.94447 3.14352 3.26501 3.33864 3.53467 3.57054 3.82265 4.16090 4.30613 4.36536 4.49097 4.57878 4.66108 4.68637 4.76408 4.79346 4.84841 4.93980 5.08678 5.11915 5.20570 5.21198 5.34315 5.37219 5.40591 5.51997 5.54033 5.61009 5.67585 5.71879 5.92524 6.01041 6.05842 6.08228 6.14024 6.20390 6.27067 6.33674 6.48641 6.53335 6.54515 6.73379 6.80091 7.30590 7.54231 8.05436 8.59957 9.16268 9.54475 10.05922 10.74612 Molecular weight = 337.15amu Principal moments of inertia in cm(-1) A = 0.024683 B = 0.001647 C = 0.001599 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1134.112275 B =17000.646916 C =17505.396868 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.023 3.977 3 Si 0.930 3.070 4 H -0.268 1.268 5 H -0.281 1.281 6 H -0.281 1.281 7 C -0.301 4.301 8 H 0.104 0.896 9 N -0.555 5.555 10 C 0.467 3.533 11 O -0.596 6.596 12 C -0.152 4.152 13 H 0.110 0.890 14 C -0.155 4.155 15 C -0.090 4.090 16 H 0.124 0.876 17 C -0.075 4.075 18 C -0.082 4.082 19 C -0.206 4.206 20 C 0.117 3.883 21 O -0.311 6.311 22 C 0.101 3.899 23 C -0.094 4.094 24 C -0.095 4.095 25 C -0.124 4.124 26 C -0.112 4.112 27 C -0.124 4.124 28 C -0.096 4.096 29 C -0.148 4.148 30 C -0.071 4.071 31 H 0.271 0.729 32 H 0.394 0.606 33 H 0.097 0.903 34 H 0.100 0.900 35 H 0.128 0.872 36 H 0.125 0.875 37 H 0.070 0.930 38 H 0.071 0.929 39 H 0.125 0.875 40 H 0.125 0.875 41 H 0.123 0.877 42 H 0.124 0.876 43 H 0.124 0.876 44 H 0.129 0.871 45 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.793 -27.585 -5.923 29.270 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.179 4.179 3 Si 0.757 3.243 4 H -0.192 1.192 5 H -0.207 1.207 6 H -0.207 1.207 7 C -0.430 4.430 8 H 0.122 0.878 9 N -0.189 5.189 10 C 0.253 3.747 11 O -0.482 6.482 12 C -0.174 4.174 13 H 0.128 0.872 14 C -0.192 4.192 15 C -0.109 4.109 16 H 0.142 0.858 17 C -0.075 4.075 18 C -0.100 4.100 19 C -0.224 4.224 20 C 0.072 3.928 21 O -0.226 6.226 22 C 0.026 3.974 23 C -0.094 4.094 24 C -0.113 4.113 25 C -0.142 4.142 26 C -0.130 4.130 27 C -0.142 4.142 28 C -0.114 4.114 29 C -0.166 4.166 30 C -0.089 4.089 31 H 0.081 0.919 32 H 0.227 0.773 33 H 0.115 0.885 34 H 0.119 0.881 35 H 0.145 0.855 36 H 0.143 0.857 37 H 0.089 0.911 38 H 0.089 0.911 39 H 0.143 0.857 40 H 0.143 0.857 41 H 0.141 0.859 42 H 0.142 0.858 43 H 0.142 0.858 44 H 0.147 0.853 45 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -7.043 -27.493 -6.084 29.026 hybrid contribution -0.536 0.946 0.086 1.090 sum -7.579 -26.548 -5.997 28.252 Atomic orbital electron populations 1.69626 1.05966 1.28122 1.50297 1.25283 0.95642 0.99779 0.97199 0.85790 0.79725 0.81045 0.77730 1.19177 1.20706 1.20715 1.19793 0.93450 0.82232 1.47556 0.87806 1.41819 1.09300 1.04443 1.63359 1.18975 0.87542 0.83929 0.84282 1.90507 1.13826 1.87147 1.56748 1.22296 1.01075 0.91325 1.02704 0.87151 1.23032 1.02357 1.02169 0.91658 1.20945 0.99333 0.91519 0.99092 0.85845 1.19181 0.94813 0.96653 0.96884 1.20893 0.95198 0.95010 0.98859 1.21156 1.01350 1.00833 0.99094 1.18959 0.93707 0.88049 0.92097 1.86123 1.34777 1.44968 1.56683 1.21549 0.84324 0.94115 0.97371 1.19523 0.99811 0.93628 0.96436 1.21130 0.97330 0.99431 0.93450 1.21182 1.00463 0.92683 0.99833 1.21246 0.97893 0.97170 0.96718 1.21171 0.98972 0.98988 0.95097 1.21109 0.98402 0.92000 0.99893 1.20381 0.94661 0.98712 1.02865 1.20861 0.99843 0.94258 0.93935 0.91867 0.77282 0.88478 0.88112 0.85464 0.85717 0.91143 0.91070 0.85690 0.85712 0.85884 0.85755 0.85765 0.85330 0.84995 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.61 13.05 55.50 0.72 -23.88 16 2 C 0.02 0.62 5.50 -17.47 -0.10 0.52 16 3 Si 0.93 21.10 29.55 -169.99 -5.02 16.08 16 4 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 5 H -0.28 -6.28 7.11 56.52 0.40 -5.87 16 6 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 7 C -0.30 -8.48 9.68 -14.94 -0.14 -8.63 16 8 H 0.10 3.07 7.16 -52.49 -0.38 2.69 16 9 N -0.55 -14.37 5.29 -10.97 -0.06 -14.43 16 10 C 0.47 11.31 7.57 -10.99 -0.08 11.22 16 11 O -0.60 -16.44 15.83 5.54 0.09 -16.35 16 12 C -0.15 -2.80 5.83 -91.77 -0.53 -3.34 16 13 H 0.11 1.87 8.14 -51.93 -0.42 1.45 16 14 C -0.15 -2.36 9.56 -26.75 -0.26 -2.62 16 15 C -0.09 -1.46 5.55 -91.79 -0.51 -1.97 16 16 H 0.12 2.18 7.67 -51.93 -0.40 1.78 16 17 C -0.08 -1.06 5.61 -104.60 -0.59 -1.65 16 18 C -0.08 -1.02 9.29 -39.60 -0.37 -1.39 16 19 C -0.21 -2.35 9.04 -39.43 -0.36 -2.70 16 20 C 0.12 1.43 6.69 -39.22 -0.26 1.16 16 21 O -0.31 -3.60 10.12 -19.44 -0.20 -3.80 16 22 C 0.10 0.88 4.87 36.00 0.18 1.05 16 23 C -0.09 -0.80 5.51 -104.62 -0.58 -1.38 16 24 C -0.10 -0.76 9.70 -39.58 -0.38 -1.14 16 25 C -0.12 -0.86 10.05 -39.58 -0.40 -1.26 16 26 C -0.11 -0.73 10.05 -39.59 -0.40 -1.13 16 27 C -0.12 -0.84 10.05 -39.58 -0.40 -1.24 16 28 C -0.10 -0.74 9.70 -39.58 -0.38 -1.13 16 29 C -0.15 -1.84 9.99 -39.44 -0.39 -2.24 16 30 C -0.07 -0.94 9.73 -39.61 -0.39 -1.33 16 31 H 0.27 6.99 8.31 -40.82 -0.34 6.65 16 32 H 0.39 9.79 7.90 -40.82 -0.32 9.47 16 33 H 0.10 1.20 6.17 -51.93 -0.32 0.88 16 34 H 0.10 1.62 8.14 -51.93 -0.42 1.20 16 35 H 0.13 1.40 6.01 -52.49 -0.32 1.08 16 36 H 0.12 1.12 6.30 -52.49 -0.33 0.79 16 37 H 0.07 0.52 7.60 -51.93 -0.39 0.12 16 38 H 0.07 0.55 7.60 -51.93 -0.39 0.15 16 39 H 0.13 0.86 8.06 -52.49 -0.42 0.44 16 40 H 0.12 0.62 8.06 -52.49 -0.42 0.20 16 41 H 0.12 0.53 8.06 -52.49 -0.42 0.11 16 42 H 0.12 0.58 8.06 -52.49 -0.42 0.16 16 43 H 0.12 0.80 8.06 -52.49 -0.42 0.38 16 44 H 0.13 1.42 8.06 -52.48 -0.42 0.99 16 45 H 0.13 1.63 8.06 -52.48 -0.42 1.21 16 LS Contribution 386.52 15.07 5.82 5.82 Total: -1.00 -32.61 386.52 -10.77 -43.39 By element: Atomic # 1 Polarization: 18.13 SS G_CDS: -5.79 Total: 12.34 kcal Atomic # 6 Polarization: -12.83 SS G_CDS: -6.34 Total: -19.17 kcal Atomic # 7 Polarization: -38.98 SS G_CDS: 0.67 Total: -38.31 kcal Atomic # 8 Polarization: -20.04 SS G_CDS: -0.11 Total: -20.15 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.02 Total: 16.08 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -32.61 -10.77 -43.39 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000072280796.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.763 kcal (2) G-P(sol) polarization free energy of solvation -32.613 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.149 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.773 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.387 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.624 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds