Wall clock time and date at job start Tue Mar 31 2020 06:00:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31410 * 1 3 3 Si 1.86793 * 119.99880 * 2 1 4 4 H 1.48502 * 109.47475 * 270.00292 * 3 2 1 5 5 H 1.48500 * 109.47180 * 30.00689 * 3 2 1 6 6 H 1.48502 * 109.47100 * 150.00467 * 3 2 1 7 7 C 1.38955 * 120.00003 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99618 * 359.97438 * 7 2 1 9 9 N 1.37096 * 119.99820 * 179.97438 * 7 2 1 10 10 C 1.34772 * 119.99519 * 179.97438 * 9 7 2 11 11 O 1.21294 * 120.00657 * 0.02562 * 10 9 7 12 12 C 1.50703 * 119.99701 * 180.02562 * 10 9 7 13 13 H 1.08997 * 115.56402 * 34.31162 * 12 10 9 14 14 C 1.53079 * 117.51099 * 248.60879 * 12 10 9 15 15 C 1.53001 * 59.98419 * 252.52126 * 14 12 10 16 16 H 1.08997 * 117.50078 * 252.50212 * 15 14 12 17 17 C 1.50699 * 117.49730 * 107.50114 * 15 14 12 18 18 C 1.38269 * 119.94417 * 171.25546 * 17 15 14 19 19 C 1.38149 * 120.05628 * 180.02562 * 18 17 15 20 20 C 1.38730 * 119.94131 * 0.02562 * 19 18 17 21 21 O 1.35901 * 120.05301 * 180.02562 * 20 19 18 22 22 C 1.42900 * 116.99988 * 179.97438 * 21 20 19 23 23 C 1.50700 * 109.47038 * 179.97438 * 22 21 20 24 24 C 1.38234 * 120.00260 * 90.00009 * 23 22 21 25 25 C 1.38234 * 120.00240 * 179.97438 * 24 23 22 26 26 C 1.38233 * 120.00037 * 0.26327 * 25 24 23 27 27 C 1.38238 * 119.99752 * 359.47832 * 26 25 24 28 28 C 1.38234 * 120.00033 * 0.49775 * 27 26 25 29 29 C 1.38725 * 119.89138 * 0.27078 * 20 19 18 30 30 C 1.38152 * 119.94572 * 359.47458 * 29 20 19 31 31 H 0.96997 * 120.00166 * 359.97438 * 1 2 3 32 32 H 0.96990 * 119.99913 * 0.02562 * 9 7 2 33 33 H 1.09002 * 117.49052 * 145.03643 * 14 12 10 34 34 H 1.08994 * 117.53357 * 359.97438 * 14 12 10 35 35 H 1.08000 * 119.97172 * 0.02562 * 18 17 15 36 36 H 1.07996 * 120.02742 * 180.02562 * 19 18 17 37 37 H 1.08999 * 109.47293 * 59.99644 * 22 21 20 38 38 H 1.08999 * 109.47417 * 299.99652 * 22 21 20 39 39 H 1.07999 * 119.99751 * 359.97438 * 24 23 22 40 40 H 1.08002 * 119.99744 * 179.97438 * 25 24 23 41 41 H 1.07998 * 120.00395 * 179.72811 * 26 25 24 42 42 H 1.07999 * 119.99934 * 180.25938 * 27 26 25 43 43 H 1.08001 * 120.00294 * 179.76453 * 28 27 26 44 44 H 1.08005 * 120.03438 * 179.72426 * 29 20 19 45 45 H 1.07999 * 119.97342 * 180.27475 * 30 29 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2480 1.6177 0.0000 4 1 2.4955 2.0465 -1.4001 5 1 1.4455 2.6526 0.7002 6 1 3.5456 1.4401 0.6999 7 6 2.0089 -1.2034 -0.0005 8 1 1.4688 -2.1387 -0.0005 9 7 3.3798 -1.2033 -0.0011 10 6 4.0536 -2.3705 -0.0011 11 8 3.4472 -3.4210 -0.0011 12 6 5.5607 -2.3705 -0.0011 13 1 6.0310 -1.5584 0.5532 14 6 6.2678 -2.8657 -1.2652 15 6 6.2671 -3.7277 -0.0011 16 1 7.2020 -3.8084 0.5535 17 6 5.4027 -4.9621 -0.0011 18 6 5.4988 -5.8720 1.0355 19 6 4.7078 -7.0046 1.0376 20 6 3.8170 -7.2290 -0.0019 21 8 3.0374 -8.3422 -0.0019 22 6 2.1429 -8.5077 -1.1039 23 6 1.3674 -9.7886 -0.9333 24 6 0.1628 -9.7822 -0.2552 25 6 -0.5488 -10.9570 -0.0991 26 6 -0.0532 -12.1392 -0.6165 27 6 1.1487 -12.1446 -1.2993 28 6 1.8601 -10.9697 -1.4558 29 6 3.7269 -6.3177 -1.0440 30 6 4.5162 -5.1839 -1.0388 31 1 -0.4850 0.8400 0.0004 32 1 3.8647 -0.3634 -0.0007 33 1 7.2030 -2.3790 -1.5420 34 1 5.6433 -3.1920 -2.0969 35 1 6.1928 -5.6970 1.8444 36 1 4.7830 -7.7148 1.8478 37 1 2.7132 -8.5495 -2.0318 38 1 1.4513 -7.6660 -1.1402 39 1 -0.2223 -8.8593 0.1527 40 1 -1.4897 -10.9520 0.4310 41 1 -0.6070 -13.0578 -0.4908 42 1 1.5339 -13.0675 -1.7072 43 1 2.8011 -10.9747 -1.9859 44 1 3.0373 -6.4923 -1.8567 45 1 4.4432 -4.4719 -1.8476 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000072280797.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:00:18 Heat of formation + Delta-G solvation = 17.385821 kcal Electronic energy + Delta-G solvation = -27510.830159 eV Core-core repulsion = 23652.835020 eV Total energy + Delta-G solvation = -3857.995138 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 337.146 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -40.16104 -39.50639 -38.73087 -37.11519 -35.46486 -33.85487 -32.30420 -31.65166 -31.08241 -30.50478 -29.24663 -26.51228 -25.65551 -23.34598 -22.76205 -22.70038 -22.36311 -21.05865 -20.20662 -19.18376 -18.17154 -17.82097 -17.13764 -16.52320 -15.94568 -15.69107 -15.11546 -15.00202 -14.56709 -14.52894 -14.43768 -14.14952 -13.57540 -13.47897 -13.34235 -13.17437 -12.98660 -12.87790 -12.62354 -12.43755 -12.25645 -12.05064 -11.72620 -11.30495 -11.26999 -11.20301 -11.00388 -10.92096 -10.60829 -10.42401 -10.07839 -10.01260 -9.93693 -9.52882 -9.09733 -9.03078 -8.71965 -8.28141 -8.10252 -7.25847 -6.33046 -3.83024 1.05446 1.22742 1.86684 1.97403 3.01749 3.05975 3.14192 3.29096 3.47339 3.88066 4.08942 4.16771 4.46061 4.55775 4.62765 4.65067 4.82265 4.93791 4.99806 5.10124 5.17319 5.21798 5.27533 5.30358 5.35785 5.40377 5.43644 5.47785 5.56660 5.75278 5.77574 5.84308 5.86391 5.94398 5.97572 6.10370 6.23642 6.25170 6.31353 6.32951 6.42388 6.54067 6.74969 6.79333 6.89824 7.17947 7.23089 7.56405 7.79210 8.14478 8.59239 8.94217 9.42552 9.85312 10.79958 Molecular weight = 337.15amu Principal moments of inertia in cm(-1) A = 0.012422 B = 0.002639 C = 0.002256 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2253.546561 B =10606.494874 C =12408.109353 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.881 5.881 2 C 0.041 3.959 3 Si 0.879 3.121 4 H -0.271 1.271 5 H -0.277 1.277 6 H -0.269 1.269 7 C -0.302 4.302 8 H 0.119 0.881 9 N -0.584 5.584 10 C 0.471 3.529 11 O -0.555 6.555 12 C -0.168 4.168 13 H 0.112 0.888 14 C -0.159 4.159 15 C -0.082 4.082 16 H 0.112 0.888 17 C -0.072 4.072 18 C -0.077 4.077 19 C -0.166 4.166 20 C 0.123 3.877 21 O -0.315 6.315 22 C 0.101 3.899 23 C -0.090 4.090 24 C -0.094 4.094 25 C -0.124 4.124 26 C -0.115 4.115 27 C -0.126 4.126 28 C -0.097 4.097 29 C -0.213 4.213 30 C 0.005 3.995 31 H 0.273 0.727 32 H 0.370 0.630 33 H 0.099 0.901 34 H 0.100 0.900 35 H 0.119 0.881 36 H 0.120 0.880 37 H 0.068 0.932 38 H 0.073 0.927 39 H 0.127 0.873 40 H 0.124 0.876 41 H 0.122 0.878 42 H 0.123 0.877 43 H 0.123 0.877 44 H 0.118 0.882 45 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.737 -16.650 -2.987 19.039 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.521 5.521 2 C -0.162 4.162 3 Si 0.706 3.294 4 H -0.196 1.196 5 H -0.202 1.202 6 H -0.195 1.195 7 C -0.431 4.431 8 H 0.137 0.863 9 N -0.222 5.222 10 C 0.258 3.742 11 O -0.438 6.438 12 C -0.190 4.190 13 H 0.130 0.870 14 C -0.197 4.197 15 C -0.101 4.101 16 H 0.130 0.870 17 C -0.073 4.073 18 C -0.095 4.095 19 C -0.185 4.185 20 C 0.079 3.921 21 O -0.229 6.229 22 C 0.026 3.974 23 C -0.090 4.090 24 C -0.112 4.112 25 C -0.142 4.142 26 C -0.133 4.133 27 C -0.144 4.144 28 C -0.115 4.115 29 C -0.232 4.232 30 C -0.014 4.014 31 H 0.084 0.916 32 H 0.203 0.797 33 H 0.118 0.882 34 H 0.118 0.882 35 H 0.137 0.863 36 H 0.138 0.862 37 H 0.086 0.914 38 H 0.091 0.909 39 H 0.145 0.855 40 H 0.142 0.858 41 H 0.140 0.860 42 H 0.141 0.859 43 H 0.141 0.859 44 H 0.136 0.864 45 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 8.075 -17.368 -2.847 19.364 hybrid contribution 0.303 1.818 -0.026 1.844 sum 8.378 -15.550 -2.874 17.895 Atomic orbital electron populations 1.69620 1.05659 1.27513 1.49268 1.25045 0.95488 0.98007 0.97652 0.86676 0.79827 0.84047 0.78897 1.19623 1.20201 1.19460 1.19434 0.79278 0.96564 1.47823 0.86293 1.42233 1.07409 1.06231 1.66289 1.18937 0.86831 0.84461 0.83991 1.90610 1.69023 1.29999 1.54132 1.22340 0.94831 0.98585 1.03241 0.87010 1.23086 1.01831 1.02962 0.91821 1.20901 0.98782 0.88983 1.01398 0.87030 1.18661 0.98583 0.94384 0.95639 1.20506 0.98612 0.93125 0.97245 1.20083 0.99487 1.00064 0.98860 1.18860 0.91875 0.86272 0.95131 1.86063 1.50993 1.40496 1.45368 1.21519 0.91526 0.95200 0.89156 1.19590 0.95327 0.94233 0.99836 1.21189 0.94376 0.98813 0.96863 1.21177 1.00131 0.92607 1.00265 1.21208 0.96211 0.98087 0.97788 1.21133 0.95497 0.97984 0.99814 1.21091 0.99331 0.91962 0.99145 1.20984 1.04749 0.97339 1.00137 1.20479 0.91143 0.92864 0.96868 0.91617 0.79691 0.88242 0.88160 0.86334 0.86228 0.91374 0.90902 0.85517 0.85770 0.86035 0.85921 0.85855 0.86436 0.86665 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.69 13.96 55.50 0.77 -24.92 16 2 C 0.04 1.12 5.50 -17.47 -0.10 1.03 16 3 Si 0.88 19.44 27.74 -169.99 -4.71 14.72 16 4 H -0.27 -5.86 7.11 56.52 0.40 -5.46 16 5 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 6 H -0.27 -5.46 6.52 56.52 0.37 -5.10 16 7 C -0.30 -8.48 10.16 -14.93 -0.15 -8.63 16 8 H 0.12 3.81 7.39 -52.48 -0.39 3.43 16 9 N -0.58 -13.86 5.09 -10.96 -0.06 -13.91 16 10 C 0.47 10.48 7.42 -10.99 -0.08 10.40 16 11 O -0.55 -13.96 11.28 5.55 0.06 -13.90 16 12 C -0.17 -2.78 6.19 -91.73 -0.57 -3.35 16 13 H 0.11 1.59 8.14 -51.93 -0.42 1.16 16 14 C -0.16 -2.18 9.58 -26.69 -0.26 -2.43 16 15 C -0.08 -1.21 6.04 -91.77 -0.55 -1.76 16 16 H 0.11 1.33 8.14 -51.93 -0.42 0.91 16 17 C -0.07 -1.23 4.37 -104.60 -0.46 -1.69 16 18 C -0.08 -1.23 9.73 -39.60 -0.39 -1.62 16 19 C -0.17 -2.74 9.99 -39.43 -0.39 -3.13 16 20 C 0.12 2.11 6.69 -39.22 -0.26 1.85 16 21 O -0.31 -5.06 10.12 -19.43 -0.20 -5.25 16 22 C 0.10 1.34 4.87 36.01 0.18 1.51 16 23 C -0.09 -1.10 5.51 -104.62 -0.58 -1.67 16 24 C -0.09 -1.10 9.70 -39.58 -0.38 -1.49 16 25 C -0.12 -1.23 10.05 -39.58 -0.40 -1.63 16 26 C -0.11 -1.04 10.05 -39.58 -0.40 -1.44 16 27 C -0.13 -1.17 10.05 -39.58 -0.40 -1.56 16 28 C -0.10 -1.03 9.70 -39.58 -0.38 -1.42 16 29 C -0.21 -3.72 9.04 -39.43 -0.36 -4.08 16 30 C 0.00 0.08 6.17 -39.60 -0.24 -0.16 16 31 H 0.27 7.37 8.31 -40.82 -0.34 7.03 16 32 H 0.37 7.83 5.76 -40.82 -0.24 7.59 16 33 H 0.10 1.06 8.14 -51.93 -0.42 0.63 16 34 H 0.10 1.46 6.17 -51.93 -0.32 1.13 16 35 H 0.12 1.58 8.06 -52.49 -0.42 1.16 16 36 H 0.12 1.75 8.06 -52.49 -0.42 1.33 16 37 H 0.07 0.79 7.59 -51.93 -0.39 0.40 16 38 H 0.07 0.99 7.62 -51.93 -0.40 0.60 16 39 H 0.13 1.44 8.06 -52.49 -0.42 1.01 16 40 H 0.12 0.98 8.06 -52.49 -0.42 0.56 16 41 H 0.12 0.80 8.06 -52.49 -0.42 0.38 16 42 H 0.12 0.84 8.06 -52.49 -0.42 0.41 16 43 H 0.12 1.12 8.06 -52.49 -0.42 0.70 16 44 H 0.12 1.85 6.30 -52.48 -0.33 1.52 16 45 H 0.12 2.09 5.77 -52.49 -0.30 1.79 16 LS Contribution 375.44 15.07 5.66 5.66 Total: -1.00 -33.01 375.44 -10.40 -43.42 By element: Atomic # 1 Polarization: 21.21 SS G_CDS: -5.76 Total: 15.45 kcal Atomic # 6 Polarization: -15.09 SS G_CDS: -6.17 Total: -21.26 kcal Atomic # 7 Polarization: -39.55 SS G_CDS: 0.72 Total: -38.83 kcal Atomic # 8 Polarization: -19.02 SS G_CDS: -0.13 Total: -19.15 kcal Atomic # 14 Polarization: 19.44 SS G_CDS: -4.71 Total: 14.72 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -33.01 -10.40 -43.42 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000072280797.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.801 kcal (2) G-P(sol) polarization free energy of solvation -33.012 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.789 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.403 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.415 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.386 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds