Wall clock time and date at job start Tue Mar 31 2020 05:00:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52997 * 109.54392 * 2 1 4 4 C 1.53101 * 109.50443 * 239.89257 * 2 1 3 5 5 O 1.43012 * 109.25933 * 183.21860 * 4 2 1 6 6 C 1.43020 * 113.73728 * 58.66705 * 5 4 2 7 7 H 1.08997 * 109.50568 * 61.31137 * 6 5 4 8 8 C 1.50709 * 109.50356 * 181.39759 * 6 5 4 9 9 C 1.38234 * 119.99760 * 39.72934 * 8 6 5 10 10 C 1.38245 * 119.99455 * 179.78870 * 9 8 6 11 11 C 1.38228 * 119.99809 * 0.43959 * 10 9 8 12 12 C 1.38235 * 120.00641 * 359.80989 * 11 10 9 13 13 C 1.38230 * 119.99551 * 220.00070 * 8 6 5 14 14 C 1.53093 * 109.25725 * 301.33142 * 6 5 4 15 15 N 1.47009 * 109.26143 * 56.85201 * 14 6 5 16 16 C 1.46901 * 111.00181 * 177.60745 * 15 14 6 17 17 C 1.53000 * 109.46769 * 293.63036 * 16 15 14 18 18 C 1.52997 * 109.47060 * 180.02562 * 17 16 15 19 19 S 1.81002 * 109.47326 * 180.02562 * 18 17 16 20 20 C 1.76202 * 99.99960 * 179.97438 * 19 18 17 21 21 H 1.07999 * 120.00077 * 0.02562 * 20 19 18 22 22 C 1.38802 * 120.00119 * 179.97438 * 20 19 18 23 23 N 1.31625 * 120.00450 * 180.02562 * 22 20 19 24 24 Si 1.86807 * 119.99698 * 0.02562 * 22 20 19 25 25 H 1.48500 * 109.47277 * 89.99681 * 24 22 20 26 26 H 1.48493 * 109.46985 * 209.99830 * 24 22 20 27 27 H 1.48500 * 109.46950 * 329.99873 * 24 22 20 28 28 H 1.09002 * 109.46961 * 299.89127 * 1 2 3 29 29 H 1.08998 * 109.47015 * 59.89153 * 1 2 3 30 30 H 1.08999 * 109.47321 * 179.89107 * 1 2 3 31 31 H 1.08999 * 109.47352 * 180.11445 * 3 2 1 32 32 H 1.09005 * 109.47122 * 300.10917 * 3 2 1 33 33 H 1.08996 * 109.47317 * 60.10920 * 3 2 1 34 34 H 1.09002 * 109.50432 * 303.15366 * 4 2 1 35 35 H 1.08995 * 109.50754 * 63.28147 * 4 2 1 36 36 H 1.07995 * 120.00499 * 359.97438 * 9 8 6 37 37 H 1.07997 * 119.99562 * 180.27199 * 10 9 8 38 38 H 1.08000 * 119.99929 * 179.83792 * 11 10 9 39 39 H 1.08001 * 120.00719 * 179.97438 * 12 11 10 40 40 H 1.08001 * 120.00308 * 359.97438 * 13 8 6 41 41 H 1.08999 * 109.51110 * 296.91265 * 14 6 5 42 42 H 1.09003 * 109.50715 * 176.78676 * 14 6 5 43 43 H 1.09001 * 109.46874 * 173.63316 * 16 15 14 44 44 H 1.08992 * 109.47407 * 53.63334 * 16 15 14 45 45 H 1.09002 * 109.47398 * 300.00295 * 17 16 15 46 46 H 1.09001 * 109.47194 * 60.00475 * 17 16 15 47 47 H 1.09002 * 109.47153 * 300.00319 * 18 17 16 48 48 H 1.08998 * 109.47533 * 59.99948 * 18 17 16 49 49 H 0.96996 * 120.00276 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0419 1.4418 0.0000 4 6 2.0412 -0.7239 -1.2485 5 8 3.4693 -0.7868 -1.2058 6 6 3.9818 -1.4579 -0.0515 7 1 3.6308 -2.4898 -0.0447 8 6 5.4884 -1.4391 -0.0859 9 6 6.1558 -0.3064 -0.5131 10 6 7.5378 -0.2876 -0.5405 11 6 8.2520 -1.4046 -0.1495 12 6 7.5846 -2.5391 0.2727 13 6 6.2026 -2.5564 0.3042 14 6 3.4903 -0.7414 1.2090 15 7 2.0209 -0.6952 1.1987 16 6 1.5055 -0.0644 2.4212 17 6 1.8265 -0.9505 3.6265 18 6 1.2891 -0.2939 4.8997 19 16 1.6694 -1.3417 6.3257 20 6 0.9590 -0.3734 7.6150 21 1 0.4749 0.5636 7.3826 22 6 1.0207 -0.8153 8.9294 23 7 0.4896 -0.0922 9.8925 24 14 1.8575 -2.4364 9.3314 25 1 3.2969 -2.1957 9.6061 26 1 1.2191 -3.0393 10.5288 27 1 1.7217 -3.3627 8.1787 28 1 -0.3633 0.5122 0.8910 29 1 -0.3633 0.5155 -0.8890 30 1 -0.3634 -1.0276 -0.0020 31 1 3.1319 1.4405 -0.0021 32 1 1.6776 1.9567 -0.8890 33 1 1.6808 1.9556 0.8909 34 1 1.6331 -1.7343 -1.2760 35 1 1.7273 -0.1795 -2.1390 36 1 5.5977 0.5649 -0.8225 37 1 8.0593 0.5988 -0.8701 38 1 9.3317 -1.3909 -0.1735 39 1 8.1426 -3.4120 0.5779 40 1 5.6810 -3.4427 0.6342 41 1 3.8862 0.2739 1.2284 42 1 3.8312 -1.2825 2.0917 43 1 0.4257 0.0595 2.3386 44 1 1.9741 0.9109 2.5522 45 1 1.3578 -1.9259 3.4955 46 1 2.9063 -1.0743 3.7091 47 1 1.7574 0.6816 5.0309 48 1 0.2093 -0.1703 4.8169 49 1 0.5330 -0.4009 10.8110 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000074990135.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:00:06 Heat of formation + Delta-G solvation = -24.693306 kcal Electronic energy + Delta-G solvation = -26828.917125 eV Core-core repulsion = 23267.685824 eV Total energy + Delta-G solvation = -3561.231302 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 335.166 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.79180 -39.15113 -36.73765 -34.39117 -32.88033 -32.43680 -31.14110 -31.02728 -28.09189 -27.45106 -26.91491 -25.73589 -24.46722 -23.49674 -22.74006 -21.29316 -20.95080 -18.86772 -17.50650 -17.32275 -16.76274 -16.25162 -15.78774 -15.58026 -15.25254 -14.99118 -14.72066 -14.54562 -14.33925 -14.22806 -13.69545 -13.59685 -13.47662 -13.05479 -12.86252 -12.75891 -12.64232 -12.44646 -12.25123 -12.06229 -11.70410 -11.52531 -11.46697 -11.37689 -11.28818 -11.18804 -11.05431 -10.97600 -10.56941 -10.32912 -10.16112 -9.84176 -9.69605 -9.11405 -9.00541 -8.93967 -8.55984 -8.41793 -6.93950 -6.28379 -4.00487 1.08663 1.21232 2.99886 3.30056 3.37715 3.45513 3.49510 3.63719 3.78154 4.31762 4.46217 4.52842 4.64714 4.70812 4.75518 4.80270 4.82824 4.90283 4.93864 5.02913 5.09737 5.11732 5.25995 5.31469 5.36424 5.37480 5.40542 5.45708 5.51761 5.53251 5.58310 5.63070 5.66901 5.74497 5.77451 5.82308 5.84919 5.88050 6.05113 6.11517 6.22677 6.24970 6.31070 6.36385 6.46873 6.63059 6.77432 6.88390 6.94095 7.00690 7.95437 8.44209 9.17630 10.81184 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.011156 B = 0.002863 C = 0.002407 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2509.177078 B = 9776.895303 C =11629.607086 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.069 3.931 3 C -0.177 4.177 4 C 0.077 3.923 5 O -0.375 6.375 6 C 0.137 3.863 7 H 0.075 0.925 8 C -0.081 4.081 9 C -0.092 4.092 10 C -0.125 4.125 11 C -0.119 4.119 12 C -0.121 4.121 13 C -0.105 4.105 14 C 0.025 3.975 15 N -0.524 5.524 16 C 0.055 3.945 17 C -0.097 4.097 18 C -0.081 4.081 19 S -0.215 6.215 20 C -0.502 4.502 21 H 0.087 0.913 22 C 0.091 3.909 23 N -0.883 5.883 24 Si 0.862 3.138 25 H -0.269 1.269 26 H -0.276 1.276 27 H -0.237 1.237 28 H 0.065 0.935 29 H 0.060 0.940 30 H 0.066 0.934 31 H 0.062 0.938 32 H 0.060 0.940 33 H 0.059 0.941 34 H 0.060 0.940 35 H 0.097 0.903 36 H 0.124 0.876 37 H 0.121 0.879 38 H 0.121 0.879 39 H 0.123 0.877 40 H 0.125 0.875 41 H 0.048 0.952 42 H 0.092 0.908 43 H 0.082 0.918 44 H 0.037 0.963 45 H 0.075 0.925 46 H 0.064 0.936 47 H 0.064 0.936 48 H 0.067 0.933 49 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.952 -1.411 -26.117 27.645 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.021 4.021 3 C -0.235 4.235 4 C 0.000 4.000 5 O -0.294 6.294 6 C 0.079 3.921 7 H 0.093 0.907 8 C -0.082 4.082 9 C -0.110 4.110 10 C -0.143 4.143 11 C -0.137 4.137 12 C -0.139 4.139 13 C -0.124 4.124 14 C -0.103 4.103 15 N -0.248 5.248 16 C -0.074 4.074 17 C -0.136 4.136 18 C -0.230 4.230 19 S 0.013 5.987 20 C -0.649 4.649 21 H 0.105 0.895 22 C -0.117 4.117 23 N -0.520 5.520 24 Si 0.686 3.314 25 H -0.194 1.194 26 H -0.201 1.201 27 H -0.161 1.161 28 H 0.084 0.916 29 H 0.079 0.921 30 H 0.085 0.915 31 H 0.081 0.919 32 H 0.079 0.921 33 H 0.078 0.922 34 H 0.078 0.922 35 H 0.115 0.885 36 H 0.142 0.858 37 H 0.139 0.861 38 H 0.139 0.861 39 H 0.141 0.859 40 H 0.143 0.857 41 H 0.066 0.934 42 H 0.111 0.889 43 H 0.101 0.899 44 H 0.055 0.945 45 H 0.093 0.907 46 H 0.083 0.917 47 H 0.083 0.917 48 H 0.086 0.914 49 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 9.378 -2.795 -26.007 27.787 hybrid contribution -0.215 1.426 0.773 1.636 sum 9.162 -1.369 -25.234 26.881 Atomic orbital electron populations 1.21874 0.92897 1.02913 1.02254 1.21738 0.96127 0.92634 0.91614 1.22392 1.02135 0.96676 1.02315 1.22682 0.80608 1.00098 0.96605 1.87977 1.20523 1.78339 1.42588 1.20888 0.89636 0.96388 0.85194 0.90701 1.19552 0.93519 0.94547 1.00549 1.20990 0.94089 0.97931 0.97995 1.21170 0.94169 0.98488 1.00444 1.21187 0.99903 0.93480 0.99087 1.21117 0.94201 0.98465 1.00140 1.21006 0.94263 0.97610 0.99477 1.22832 0.88274 1.00482 0.98740 1.62430 1.07865 1.52694 1.01812 1.22283 1.00700 0.95875 0.88549 1.21337 1.01410 0.99372 0.91445 1.23002 1.02794 1.01199 0.96029 1.84155 1.78110 1.34277 1.02152 1.22127 1.42136 1.08958 0.91706 0.89465 1.24798 0.94322 0.97417 0.95136 1.69935 1.43526 1.38042 1.00447 0.86670 0.80269 0.84418 0.79994 1.19395 1.20109 1.16134 0.91645 0.92062 0.91469 0.91869 0.92072 0.92233 0.92216 0.88531 0.85828 0.86087 0.86136 0.85856 0.85744 0.93375 0.88948 0.89950 0.94492 0.90673 0.91705 0.91715 0.91411 0.91984 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.23 8.21 37.16 0.31 -0.92 16 2 C 0.07 0.67 0.68 -131.49 -0.09 0.58 16 3 C -0.18 -1.69 7.68 37.16 0.29 -1.41 16 4 C 0.08 0.71 5.70 37.21 0.21 0.92 16 5 O -0.38 -4.08 9.24 -35.23 -0.33 -4.40 16 6 C 0.14 1.46 3.01 -27.83 -0.08 1.38 16 7 H 0.08 0.80 8.00 -51.93 -0.42 0.38 16 8 C -0.08 -0.86 4.98 -104.62 -0.52 -1.38 16 9 C -0.09 -0.94 9.36 -39.58 -0.37 -1.31 16 10 C -0.12 -1.14 10.05 -39.58 -0.40 -1.53 16 11 C -0.12 -1.03 10.05 -39.59 -0.40 -1.42 16 12 C -0.12 -1.08 10.05 -39.58 -0.40 -1.48 16 13 C -0.11 -1.03 9.67 -39.58 -0.38 -1.41 16 14 C 0.02 0.28 4.30 -3.72 -0.02 0.27 16 15 N -0.52 -6.00 4.49 -218.68 -0.98 -6.98 16 16 C 0.05 0.69 4.10 -3.82 -0.02 0.68 16 17 C -0.10 -1.49 5.15 -26.73 -0.14 -1.63 16 18 C -0.08 -1.57 5.67 37.16 0.21 -1.36 16 19 S -0.21 -5.25 19.41 -107.50 -2.09 -7.34 16 20 C -0.50 -14.63 10.04 30.94 0.31 -14.32 16 21 H 0.09 2.71 8.03 -52.49 -0.42 2.28 16 22 C 0.09 2.69 5.50 -17.43 -0.10 2.59 16 23 N -0.88 -26.92 13.97 55.49 0.78 -26.14 16 24 Si 0.86 21.65 27.74 -169.99 -4.72 16.94 16 25 H -0.27 -6.67 7.11 56.52 0.40 -6.27 16 26 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 27 H -0.24 -5.84 6.74 56.52 0.38 -5.46 16 28 H 0.06 0.61 6.16 -51.93 -0.32 0.29 16 29 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 31 H 0.06 0.66 6.07 -51.93 -0.31 0.35 16 32 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 33 H 0.06 0.61 6.69 -51.93 -0.35 0.26 16 34 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 35 H 0.10 0.72 8.14 -51.93 -0.42 0.30 16 36 H 0.12 1.23 7.77 -52.49 -0.41 0.82 16 37 H 0.12 0.86 8.06 -52.49 -0.42 0.44 16 38 H 0.12 0.78 8.06 -52.49 -0.42 0.36 16 39 H 0.12 0.85 8.06 -52.49 -0.42 0.43 16 40 H 0.12 1.04 8.04 -52.49 -0.42 0.62 16 41 H 0.05 0.58 6.39 -51.93 -0.33 0.25 16 42 H 0.09 1.13 6.38 -51.93 -0.33 0.80 16 43 H 0.08 1.01 5.76 -51.93 -0.30 0.72 16 44 H 0.04 0.48 6.89 -51.93 -0.36 0.12 16 45 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 46 H 0.06 1.01 6.52 -51.93 -0.34 0.67 16 47 H 0.06 1.26 8.14 -51.91 -0.42 0.84 16 48 H 0.07 1.31 8.14 -51.92 -0.42 0.89 16 49 H 0.27 7.64 8.31 -40.82 -0.34 7.30 16 LS Contribution 390.32 15.07 5.88 5.88 Total: -1.00 -31.45 390.32 -11.15 -42.59 By element: Atomic # 1 Polarization: 9.34 SS G_CDS: -8.11 Total: 1.22 kcal Atomic # 6 Polarization: -20.19 SS G_CDS: -1.58 Total: -21.77 kcal Atomic # 7 Polarization: -32.91 SS G_CDS: -0.21 Total: -33.12 kcal Atomic # 8 Polarization: -4.08 SS G_CDS: -0.33 Total: -4.40 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -4.72 Total: 16.94 kcal Atomic # 16 Polarization: -5.25 SS G_CDS: -2.09 Total: -7.34 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -31.45 -11.15 -42.59 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000074990135.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.900 kcal (2) G-P(sol) polarization free energy of solvation -31.446 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.545 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.148 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.594 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.693 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds