Wall clock time and date at job start Tue Mar 31 2020 05:29:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38114 * 120.40400 * 2 1 4 4 C 1.39625 * 118.33598 * 180.24192 * 3 2 1 5 5 N 1.38537 * 120.53455 * 179.80320 * 4 3 2 6 6 C 1.46963 * 110.99720 * 303.52182 * 5 4 3 7 7 C 1.53055 * 109.36395 * 176.81273 * 6 5 4 8 8 N 1.46956 * 109.36416 * 58.39725 * 7 6 5 9 9 C 1.46899 * 110.99902 * 176.81045 * 8 7 6 10 10 C 1.52994 * 109.47123 * 313.79988 * 9 8 7 11 11 C 1.53004 * 109.47097 * 179.97438 * 10 9 8 12 12 S 1.81003 * 109.47288 * 180.02562 * 11 10 9 13 13 C 1.76194 * 100.00283 * 179.97438 * 12 11 10 14 14 H 1.08003 * 119.99452 * 359.97438 * 13 12 11 15 15 C 1.38796 * 120.00429 * 179.97438 * 13 12 11 16 16 N 1.31630 * 119.99537 * 0.02562 * 15 13 12 17 17 Si 1.86801 * 120.00027 * 179.97438 * 15 13 12 18 18 H 1.48498 * 109.47104 * 90.00396 * 17 15 13 19 19 H 1.48502 * 109.47005 * 209.99996 * 17 15 13 20 20 H 1.48497 * 109.47387 * 329.99921 * 17 15 13 21 21 C 1.46950 * 110.88187 * 300.68087 * 8 7 6 22 22 C 1.46956 * 111.00210 * 179.72312 * 5 4 3 23 23 N 1.32997 * 118.93339 * 359.52341 * 4 3 2 24 24 C 1.31750 * 120.68826 * 0.25819 * 23 4 3 25 25 C 1.50698 * 119.08466 * 180.02562 * 24 23 4 26 26 N 1.31790 * 121.83321 * 359.96884 * 24 23 4 27 27 H 1.09003 * 109.47364 * 270.23737 * 1 2 3 28 28 H 1.08999 * 109.47005 * 30.23141 * 1 2 3 29 29 H 1.08997 * 109.47849 * 150.23547 * 1 2 3 30 30 H 1.08001 * 120.83227 * 0.02562 * 3 2 1 31 31 H 1.09003 * 109.48613 * 296.77789 * 6 5 4 32 32 H 1.08994 * 109.49091 * 56.84243 * 6 5 4 33 33 H 1.08994 * 109.48838 * 298.43235 * 7 6 5 34 34 H 1.09004 * 109.48400 * 178.36395 * 7 6 5 35 35 H 1.08998 * 109.46715 * 73.80344 * 9 8 7 36 36 H 1.09005 * 109.47180 * 193.80130 * 9 8 7 37 37 H 1.08998 * 109.47615 * 299.99804 * 10 9 8 38 38 H 1.09003 * 109.47493 * 60.00022 * 10 9 8 39 39 H 1.09008 * 109.46787 * 299.99776 * 11 10 9 40 40 H 1.08995 * 109.47168 * 60.00286 * 11 10 9 41 41 H 0.97006 * 119.99544 * 180.02562 * 16 15 13 42 42 H 1.09003 * 109.48721 * 299.35316 * 21 8 7 43 43 H 1.09004 * 109.49418 * 179.28931 * 21 8 7 44 44 H 1.09000 * 109.48237 * 303.15258 * 22 5 4 45 45 H 1.08993 * 109.48945 * 63.19305 * 22 5 4 46 46 H 1.08998 * 109.47149 * 89.99623 * 25 24 23 47 47 H 1.09006 * 109.46727 * 209.99919 * 25 24 23 48 48 H 1.09003 * 109.46568 * 329.99345 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2060 1.1912 0.0000 4 6 3.6013 1.1408 -0.0052 5 7 4.3477 2.3079 -0.0095 6 6 3.9888 3.1583 -1.1531 7 6 4.7759 4.4688 -1.0777 8 7 6.2154 4.1733 -1.0761 9 6 7.0069 5.4108 -1.0807 10 6 6.4409 6.3742 -2.1259 11 6 7.2649 7.6634 -2.1303 12 16 6.5949 8.8035 -3.3662 13 6 7.6994 10.1609 -3.1611 14 1 8.4926 10.1058 -2.4301 15 6 7.5502 11.3008 -3.9387 16 7 6.5831 11.3680 -4.8292 17 14 8.7207 12.7401 -3.7206 18 1 9.8838 12.5742 -4.6288 19 1 8.0152 14.0056 -4.0459 20 1 9.1937 12.7847 -2.3136 21 6 6.5742 3.3230 0.0675 22 6 5.7873 2.0124 -0.0079 23 7 4.2023 -0.0456 -0.0002 24 6 3.4955 -1.1574 0.0043 25 6 4.2139 -2.4821 0.0104 26 7 2.1777 -1.1433 0.0048 27 1 -0.3634 0.0043 1.0277 28 1 -0.3633 0.8879 -0.5174 29 1 -0.3635 -0.8920 -0.5101 30 1 1.6863 2.1379 0.0004 31 1 4.2319 2.6410 -2.0813 32 1 2.9207 3.3734 -1.1253 33 1 4.5125 4.9990 -0.1626 34 1 4.5329 5.0890 -1.9406 35 1 6.9608 5.8752 -0.0957 36 1 8.0435 5.1782 -1.3246 37 1 6.4871 5.9098 -3.1109 38 1 5.4043 6.6068 -1.8821 39 1 7.2183 8.1277 -1.1452 40 1 8.3016 7.4312 -2.3739 41 1 6.4790 12.1645 -5.3729 42 1 6.3312 3.8402 0.9956 43 1 7.6424 3.1077 0.0397 44 1 6.0301 1.3922 0.8549 45 1 6.0506 1.4818 -0.9228 46 1 4.3867 -2.7970 1.0396 47 1 3.6049 -3.2280 -0.5004 48 1 5.1696 -2.3794 -0.5035 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000074990590.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:29:06 Heat of formation + Delta-G solvation = 52.724457 kcal Electronic energy + Delta-G solvation = -25812.506299 eV Core-core repulsion = 22221.498924 eV Total energy + Delta-G solvation = -3591.007375 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 336.168 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.62325 -39.59389 -36.80209 -34.72989 -33.46092 -32.44434 -31.87136 -31.21460 -29.53363 -28.57352 -27.40484 -25.65337 -24.28690 -24.21457 -22.33393 -22.29509 -20.85837 -19.98966 -18.10375 -17.48044 -17.33328 -15.94076 -15.78046 -15.56441 -15.35330 -15.04022 -14.86212 -14.81578 -14.64384 -14.44487 -13.95518 -13.81382 -13.74647 -13.32062 -12.98931 -12.86479 -12.63957 -12.61348 -12.46607 -12.08794 -11.87738 -11.71907 -11.53326 -11.22930 -11.19397 -11.09080 -11.02187 -10.84043 -10.74874 -10.59789 -10.34208 -9.92257 -9.55142 -9.53876 -9.07049 -8.77964 -8.42104 -8.32356 -6.54418 -6.24163 -3.94443 0.65579 0.80570 2.97999 3.20444 3.21139 3.28113 3.43940 3.50661 3.64049 3.79798 3.82058 4.21263 4.36779 4.59618 4.68168 4.77876 4.82759 4.92899 5.00868 5.09106 5.11857 5.11952 5.13424 5.18934 5.21408 5.21955 5.28789 5.31545 5.36297 5.46711 5.50917 5.58315 5.61213 5.63052 5.68244 5.70187 5.78347 5.91071 6.01001 6.09526 6.19808 6.27833 6.53883 6.65170 6.70131 6.88518 6.94687 6.97807 7.59414 7.89457 8.35426 9.22297 10.84017 Molecular weight = 336.17amu Principal moments of inertia in cm(-1) A = 0.028208 B = 0.001746 C = 0.001674 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 992.370607 B =16032.309904 C =16722.808187 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C 0.192 3.808 3 C -0.252 4.252 4 C 0.366 3.634 5 N -0.475 5.475 6 C 0.064 3.936 7 C 0.048 3.952 8 N -0.540 5.540 9 C 0.061 3.939 10 C -0.101 4.101 11 C -0.113 4.113 12 S -0.133 6.133 13 C -0.516 4.516 14 H 0.072 0.928 15 C 0.071 3.929 16 N -0.870 5.870 17 Si 0.918 3.082 18 H -0.277 1.277 19 H -0.282 1.282 20 H -0.272 1.272 21 C 0.052 3.948 22 C 0.071 3.929 23 N -0.560 5.560 24 C 0.346 3.654 25 C -0.084 4.084 26 N -0.545 5.545 27 H 0.085 0.915 28 H 0.081 0.919 29 H 0.082 0.918 30 H 0.146 0.854 31 H 0.059 0.941 32 H 0.090 0.910 33 H 0.047 0.953 34 H 0.101 0.899 35 H 0.035 0.965 36 H 0.077 0.923 37 H 0.074 0.926 38 H 0.067 0.933 39 H 0.058 0.942 40 H 0.061 0.939 41 H 0.267 0.733 42 H 0.042 0.958 43 H 0.086 0.914 44 H 0.089 0.911 45 H 0.063 0.937 46 H 0.085 0.915 47 H 0.085 0.915 48 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.599 -25.244 11.257 28.947 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.048 3.952 3 C -0.277 4.277 4 C 0.126 3.874 5 N -0.192 5.192 6 C -0.061 4.061 7 C -0.080 4.080 8 N -0.265 5.265 9 C -0.068 4.068 10 C -0.139 4.139 11 C -0.262 4.262 12 S 0.095 5.905 13 C -0.664 4.664 14 H 0.090 0.910 15 C -0.138 4.138 16 N -0.505 5.505 17 Si 0.745 3.255 18 H -0.203 1.203 19 H -0.208 1.208 20 H -0.197 1.197 21 C -0.076 4.076 22 C -0.056 4.056 23 N -0.282 5.282 24 C 0.077 3.923 25 C -0.143 4.143 26 N -0.264 5.264 27 H 0.103 0.897 28 H 0.100 0.900 29 H 0.101 0.899 30 H 0.164 0.836 31 H 0.077 0.923 32 H 0.108 0.892 33 H 0.065 0.935 34 H 0.119 0.881 35 H 0.053 0.947 36 H 0.096 0.904 37 H 0.093 0.907 38 H 0.086 0.914 39 H 0.077 0.923 40 H 0.080 0.920 41 H 0.077 0.923 42 H 0.061 0.939 43 H 0.104 0.896 44 H 0.107 0.893 45 H 0.081 0.919 46 H 0.103 0.897 47 H 0.104 0.896 48 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -9.062 -26.001 10.395 29.432 hybrid contribution 1.387 2.121 1.237 2.821 sum -7.675 -23.880 11.632 27.649 Atomic orbital electron populations 1.20772 0.87766 1.04070 1.03666 1.21521 0.97433 0.87676 0.88578 1.22151 0.93824 1.00868 1.10855 1.20108 0.90437 0.88611 0.88218 1.59075 1.07364 1.11940 1.40866 1.22421 1.00590 0.93342 0.89793 1.22339 0.87683 0.95271 1.02696 1.62254 1.04542 1.17693 1.41993 1.22200 0.97812 0.88373 0.98398 1.21435 0.99406 0.93744 0.99356 1.23227 1.01696 0.98237 1.03030 1.84597 1.44824 1.13511 1.47522 1.22687 1.17058 1.01291 1.25406 0.90966 1.25016 0.95967 0.98247 0.94579 1.70024 1.30174 1.28874 1.21454 0.86165 0.80174 0.80531 0.78659 1.20255 1.20751 1.19710 1.22250 0.99904 0.93191 0.92264 1.22104 0.83538 0.96717 1.03234 1.68226 1.41595 0.98074 1.20292 1.23036 0.86534 0.94068 0.88679 1.20563 0.99993 0.89897 1.03817 1.68127 1.09484 1.30207 1.18571 0.89686 0.90050 0.89921 0.83589 0.92275 0.89220 0.93503 0.88096 0.94690 0.90449 0.90690 0.91411 0.92299 0.92036 0.92311 0.93942 0.89587 0.89287 0.91907 0.89656 0.89610 0.89648 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.61 10.21 36.01 0.37 -0.24 16 2 C 0.19 1.79 6.82 -82.33 -0.56 1.23 16 3 C -0.25 -2.40 8.98 -39.11 -0.35 -2.75 16 4 C 0.37 4.07 6.40 -154.78 -0.99 3.08 16 5 N -0.48 -5.07 4.73 -172.86 -0.82 -5.89 16 6 C 0.06 0.64 5.38 -3.76 -0.02 0.62 16 7 C 0.05 0.53 4.93 -3.77 -0.02 0.51 16 8 N -0.54 -6.39 4.86 -234.47 -1.14 -7.53 16 9 C 0.06 0.79 5.28 -3.83 -0.02 0.77 16 10 C -0.10 -1.58 4.48 -26.73 -0.12 -1.70 16 11 C -0.11 -2.23 5.67 37.16 0.21 -2.02 16 12 S -0.13 -3.44 21.44 -107.50 -2.30 -5.74 16 13 C -0.52 -14.76 9.50 30.94 0.29 -14.46 16 14 H 0.07 2.00 7.80 -52.48 -0.41 1.59 16 15 C 0.07 2.01 5.49 -17.43 -0.10 1.91 16 16 N -0.87 -25.88 13.22 55.49 0.73 -25.15 16 17 Si 0.92 21.48 29.55 -169.99 -5.02 16.46 16 18 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 19 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 20 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 21 C 0.05 0.54 5.58 -3.77 -0.02 0.52 16 22 C 0.07 0.74 4.80 -3.77 -0.02 0.72 16 23 N -0.56 -6.46 8.77 -9.97 -0.09 -6.55 16 24 C 0.35 3.66 7.64 -157.24 -1.20 2.46 16 25 C -0.08 -0.59 10.32 36.00 0.37 -0.22 16 26 N -0.55 -5.88 10.27 -7.07 -0.07 -5.96 16 27 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 28 H 0.08 0.34 8.09 -51.93 -0.42 -0.08 16 29 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.15 1.10 7.28 -52.49 -0.38 0.72 16 31 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.09 0.73 6.88 -51.93 -0.36 0.38 16 33 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 34 H 0.10 1.15 5.99 -51.93 -0.31 0.83 16 35 H 0.03 0.45 8.08 -51.93 -0.42 0.03 16 36 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 37 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 38 H 0.07 1.04 6.26 -51.93 -0.33 0.72 16 39 H 0.06 1.16 8.14 -51.91 -0.42 0.74 16 40 H 0.06 1.21 8.14 -51.92 -0.42 0.79 16 41 H 0.27 7.40 8.31 -40.82 -0.34 7.06 16 42 H 0.04 0.46 8.14 -51.93 -0.42 0.03 16 43 H 0.09 0.81 8.14 -51.93 -0.42 0.38 16 44 H 0.09 0.92 7.84 -51.93 -0.41 0.51 16 45 H 0.06 0.72 8.06 -51.93 -0.42 0.30 16 46 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 47 H 0.09 0.51 8.14 -51.93 -0.42 0.09 16 48 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 LS Contribution 396.09 15.07 5.97 5.97 Total: -1.00 -32.78 396.09 -13.00 -45.78 By element: Atomic # 1 Polarization: 6.25 SS G_CDS: -8.08 Total: -1.83 kcal Atomic # 6 Polarization: -7.39 SS G_CDS: -2.17 Total: -9.56 kcal Atomic # 7 Polarization: -49.69 SS G_CDS: -1.38 Total: -51.08 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.02 Total: 16.46 kcal Atomic # 16 Polarization: -3.44 SS G_CDS: -2.30 Total: -5.74 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -32.78 -13.00 -45.78 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000074990590.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.505 kcal (2) G-P(sol) polarization free energy of solvation -32.782 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.723 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.999 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.781 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.724 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds