Wall clock time and date at job start Tue Mar 31 2020 05:22:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86801 * 119.99969 * 2 1 4 4 H 1.48506 * 109.46920 * 270.00178 * 3 2 1 5 5 H 1.48497 * 109.47204 * 29.99877 * 3 2 1 6 6 H 1.48496 * 109.47149 * 150.00155 * 3 2 1 7 7 C 1.37879 * 119.99979 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00118 * 180.02562 * 7 2 1 9 9 C 1.50703 * 119.99781 * 359.97438 * 7 2 1 10 10 N 1.46497 * 109.46790 * 179.97438 * 9 7 2 11 11 C 1.34971 * 125.97495 * 124.97621 * 10 9 7 12 12 C 1.35244 * 107.85946 * 179.72802 * 11 10 9 13 13 C 1.40400 * 107.86465 * 0.43290 * 12 11 10 14 14 N 1.40190 * 125.97024 * 179.82761 * 13 12 11 15 15 C 1.34780 * 119.99693 * 359.71745 * 14 13 12 16 16 O 1.21592 * 120.00431 * 359.97438 * 15 14 13 17 17 N 1.34776 * 119.99349 * 180.02562 * 15 14 13 18 18 C 1.39625 * 119.99620 * 185.61605 * 17 15 14 19 19 C 1.37827 * 120.29745 * 24.85426 * 18 17 15 20 20 C 1.39166 * 120.74903 * 179.97438 * 19 18 17 21 21 C 1.36160 * 121.08265 * 0.06075 * 20 19 18 22 22 C 1.40508 * 119.95739 * 359.95883 * 21 20 19 23 23 C 1.40574 * 121.21390 * 180.02562 * 22 21 20 24 24 C 1.36098 * 119.66711 * 179.97438 * 23 22 21 25 25 C 1.39350 * 120.97327 * 0.02562 * 24 23 22 26 26 C 1.36146 * 120.96358 * 0.02562 * 25 24 23 27 27 C 1.40368 * 119.67103 * 359.95027 * 26 25 24 28 28 N 1.31209 * 108.05956 * 359.56169 * 13 12 11 29 29 H 0.97002 * 120.00037 * 0.02562 * 1 2 3 30 30 H 1.08996 * 109.47081 * 60.00382 * 9 7 2 31 31 H 1.08993 * 109.47381 * 299.99913 * 9 7 2 32 32 H 1.08000 * 126.06466 * 0.02562 * 11 10 9 33 33 H 1.08002 * 126.06749 * 180.29216 * 12 11 10 34 34 H 0.96996 * 119.99743 * 179.71356 * 14 13 12 35 35 H 0.96996 * 120.00750 * 5.61348 * 17 15 14 36 36 H 1.08000 * 119.62157 * 359.97438 * 19 18 17 37 37 H 1.07996 * 119.45166 * 180.02562 * 20 19 18 38 38 H 1.08007 * 120.02300 * 180.23693 * 21 20 19 39 39 H 1.08008 * 120.16640 * 359.95406 * 23 22 21 40 40 H 1.07993 * 119.51216 * 179.97438 * 24 23 22 41 41 H 1.08006 * 119.51556 * 179.97438 * 25 24 23 42 42 H 1.08001 * 120.16251 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0017 10 7 2.2030 -3.6126 0.0015 11 6 2.2430 -4.6218 0.8969 12 6 3.2575 -5.4455 0.5484 13 6 3.8682 -4.9151 -0.5991 14 7 4.9636 -5.4664 -1.2785 15 6 5.5282 -6.6064 -0.8333 16 8 5.0879 -7.1564 0.1576 17 7 6.5816 -7.1361 -1.4862 18 6 7.0927 -8.3757 -1.0968 19 6 6.2892 -9.2847 -0.4428 20 6 6.7887 -10.5232 -0.0509 21 6 8.0814 -10.8707 -0.3004 22 6 8.9337 -9.9725 -0.9644 23 6 10.2725 -10.3041 -1.2359 24 6 11.0703 -9.4103 -1.8816 25 6 10.5802 -8.1677 -2.2786 26 6 9.2894 -7.8123 -2.0314 27 6 8.4368 -8.7086 -1.3681 28 7 3.2310 -3.8163 -0.9280 29 1 -0.4850 0.8401 -0.0004 30 1 0.6241 -2.5575 -0.8880 31 1 0.6247 -2.5563 0.8919 32 1 1.5794 -4.7512 1.7391 33 1 3.5478 -6.3496 1.0630 34 1 5.3150 -5.0275 -2.0688 35 1 6.9847 -6.6563 -2.2265 36 1 5.2603 -9.0330 -0.2320 37 1 6.1405 -11.2197 0.4600 38 1 8.4501 -11.8379 0.0080 39 1 10.6662 -11.2633 -0.9334 40 1 12.0985 -9.6675 -2.0886 41 1 11.2342 -7.4762 -2.7892 42 1 8.9232 -6.8457 -2.3445 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000075140819.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:22:14 Heat of formation + Delta-G solvation = 111.551145 kcal Electronic energy + Delta-G solvation = -26693.567171 eV Core-core repulsion = 22833.833666 eV Total energy + Delta-G solvation = -3859.733505 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 336.133 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.35499 -40.52195 -39.57030 -36.76780 -35.31760 -34.84927 -33.39965 -31.90691 -30.84261 -30.51800 -29.38746 -28.70874 -26.66863 -24.08106 -23.47903 -23.21018 -22.50977 -21.22755 -20.37401 -20.03119 -18.51980 -18.17550 -17.25869 -16.63896 -16.57403 -16.34404 -15.77390 -15.69812 -15.02671 -14.81120 -14.35701 -14.30806 -14.18342 -13.92853 -13.77984 -13.64063 -12.99925 -12.86561 -12.43065 -12.30938 -12.26699 -11.97032 -11.71428 -11.39455 -11.24472 -11.09636 -10.91356 -10.86308 -10.46032 -10.28127 -10.12442 -9.72679 -9.56166 -9.51550 -8.83187 -8.65422 -8.19527 -7.74374 -7.46012 -6.26284 -4.31406 0.30092 0.79462 1.74099 2.13996 2.53169 2.80955 3.02483 3.22282 3.28165 3.32600 3.45581 3.70784 3.92587 4.12399 4.31471 4.37222 4.53280 4.58815 4.74994 4.96107 5.05174 5.08799 5.14567 5.17431 5.41262 5.48160 5.60016 5.62730 5.73270 5.88316 6.03146 6.08597 6.18670 6.20205 6.22646 6.38420 6.46854 6.53451 6.61621 6.78665 6.86855 6.93543 7.05019 7.37602 7.64597 7.71745 7.87985 8.01400 8.33541 8.58969 8.77753 9.34261 10.82407 Molecular weight = 336.13amu Principal moments of inertia in cm(-1) A = 0.022114 B = 0.002089 C = 0.001938 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1265.852026 B =13400.079533 C =14443.788919 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.062 3.938 3 Si 0.908 3.092 4 H -0.278 1.278 5 H -0.284 1.284 6 H -0.273 1.273 7 C -0.529 4.529 8 H 0.069 0.931 9 C 0.258 3.742 10 N -0.318 5.318 11 C 0.053 3.947 12 C -0.286 4.286 13 C 0.272 3.728 14 N -0.637 5.637 15 C 0.713 3.287 16 O -0.545 6.545 17 N -0.677 5.677 18 C 0.180 3.820 19 C -0.136 4.136 20 C -0.085 4.085 21 C -0.137 4.137 22 C -0.032 4.032 23 C -0.106 4.106 24 C -0.116 4.116 25 C -0.120 4.120 26 C -0.105 4.105 27 C -0.068 4.068 28 N -0.304 5.304 29 H 0.267 0.733 30 H 0.045 0.955 31 H 0.058 0.942 32 H 0.169 0.831 33 H 0.161 0.839 34 H 0.409 0.591 35 H 0.407 0.593 36 H 0.153 0.847 37 H 0.126 0.874 38 H 0.126 0.874 39 H 0.127 0.873 40 H 0.122 0.878 41 H 0.122 0.878 42 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.365 -20.866 -3.954 28.077 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.141 4.141 3 Si 0.735 3.265 4 H -0.203 1.203 5 H -0.210 1.210 6 H -0.197 1.197 7 C -0.567 4.567 8 H 0.087 0.913 9 C 0.141 3.859 10 N -0.100 5.100 11 C -0.097 4.097 12 C -0.317 4.317 13 C 0.018 3.982 14 N -0.286 5.286 15 C 0.413 3.587 16 O -0.419 6.419 17 N -0.323 5.323 18 C 0.084 3.916 19 C -0.157 4.157 20 C -0.104 4.104 21 C -0.156 4.156 22 C -0.033 4.033 23 C -0.125 4.125 24 C -0.134 4.134 25 C -0.138 4.138 26 C -0.124 4.124 27 C -0.071 4.071 28 N -0.135 5.135 29 H 0.077 0.923 30 H 0.063 0.937 31 H 0.076 0.924 32 H 0.186 0.814 33 H 0.179 0.821 34 H 0.244 0.756 35 H 0.244 0.756 36 H 0.170 0.830 37 H 0.144 0.856 38 H 0.144 0.856 39 H 0.145 0.855 40 H 0.140 0.860 41 H 0.140 0.860 42 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 17.562 -20.075 -3.894 26.955 hybrid contribution 0.838 0.924 -0.229 1.268 sum 18.400 -19.151 -4.123 26.876 Atomic orbital electron populations 1.69918 1.06027 1.27645 1.49713 1.24951 0.94997 0.99563 0.94606 0.86322 0.79658 0.82125 0.78356 1.20342 1.20968 1.19736 1.21249 0.93976 0.89373 1.52104 0.91320 1.19760 0.85590 0.81262 0.99332 1.49088 1.23189 1.19795 1.17931 1.22571 1.00316 0.90096 0.96743 1.21503 1.02099 1.06348 1.01744 1.18729 0.90651 0.94290 0.94526 1.41309 1.31338 1.24820 1.31130 1.15535 0.80015 0.80464 0.82709 1.90850 1.63733 1.61640 1.25633 1.42418 1.33051 1.20254 1.36566 1.17369 0.90976 0.84356 0.98889 1.21455 1.01703 0.92292 1.00294 1.20761 0.95504 0.95912 0.98173 1.20934 0.94111 0.99419 1.01091 1.17859 0.94144 0.93008 0.98239 1.21023 0.92556 0.99795 0.99078 1.20846 0.99914 0.94026 0.98646 1.20793 0.95644 0.96869 1.00502 1.20821 0.94179 0.98638 0.98718 1.17742 0.91672 0.95384 1.02260 1.77331 1.03737 1.16117 1.16301 0.92309 0.93681 0.92447 0.81403 0.82115 0.75623 0.75647 0.82975 0.85560 0.85648 0.85472 0.86022 0.85951 0.86094 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.13 13.29 55.43 0.74 -24.40 16 2 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 3 Si 0.91 21.23 29.54 -169.99 -5.02 16.21 16 4 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 5 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 6 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 7 C -0.53 -14.57 9.24 -34.44 -0.32 -14.89 16 8 H 0.07 1.96 7.81 -52.49 -0.41 1.55 16 9 C 0.26 6.48 6.26 -5.19 -0.03 6.44 16 10 N -0.32 -7.27 3.67 -62.56 -0.23 -7.50 16 11 C 0.05 1.03 11.44 -17.24 -0.20 0.84 16 12 C -0.29 -5.53 9.61 -39.83 -0.38 -5.91 16 13 C 0.27 5.30 8.11 -154.37 -1.25 4.05 16 14 N -0.64 -9.46 5.46 -15.51 -0.08 -9.55 16 15 C 0.71 10.17 8.33 -86.92 -0.72 9.45 16 16 O -0.54 -9.26 10.64 5.28 0.06 -9.20 16 17 N -0.68 -7.29 5.17 -14.00 -0.07 -7.36 16 18 C 0.18 2.09 6.44 -83.37 -0.54 1.56 16 19 C -0.14 -1.65 8.70 -39.39 -0.34 -1.99 16 20 C -0.08 -0.84 9.94 -39.98 -0.40 -1.24 16 21 C -0.14 -1.23 9.75 -39.47 -0.38 -1.62 16 22 C -0.03 -0.31 5.74 -106.85 -0.61 -0.93 16 23 C -0.11 -0.84 9.77 -39.47 -0.39 -1.23 16 24 C -0.12 -0.85 9.95 -39.94 -0.40 -1.24 16 25 C -0.12 -0.91 9.95 -39.92 -0.40 -1.31 16 26 C -0.11 -0.92 9.46 -39.53 -0.37 -1.29 16 27 C -0.07 -0.72 5.75 -106.70 -0.61 -1.33 16 28 N -0.30 -6.84 12.42 31.44 0.39 -6.45 16 29 H 0.27 7.09 8.31 -40.82 -0.34 6.75 16 30 H 0.05 1.19 8.14 -51.93 -0.42 0.77 16 31 H 0.06 1.41 8.07 -51.93 -0.42 0.99 16 32 H 0.17 2.67 8.06 -52.49 -0.42 2.25 16 33 H 0.16 3.02 5.91 -52.49 -0.31 2.71 16 34 H 0.41 4.79 8.84 -40.82 -0.36 4.43 16 35 H 0.41 3.05 7.26 -40.82 -0.30 2.75 16 36 H 0.15 2.08 5.75 -52.49 -0.30 1.78 16 37 H 0.13 0.98 8.06 -52.49 -0.42 0.55 16 38 H 0.13 0.81 8.06 -52.48 -0.42 0.38 16 39 H 0.13 0.71 8.06 -52.48 -0.42 0.28 16 40 H 0.12 0.60 8.06 -52.49 -0.42 0.18 16 41 H 0.12 0.67 8.06 -52.48 -0.42 0.25 16 42 H 0.12 0.81 6.70 -52.49 -0.35 0.46 16 LS Contribution 360.54 15.07 5.43 5.43 Total: -1.00 -33.08 360.54 -10.78 -43.86 By element: Atomic # 1 Polarization: 12.54 SS G_CDS: -4.55 Total: 8.00 kcal Atomic # 6 Polarization: -1.60 SS G_CDS: -7.45 Total: -9.04 kcal Atomic # 7 Polarization: -55.99 SS G_CDS: 0.74 Total: -55.25 kcal Atomic # 8 Polarization: -9.26 SS G_CDS: 0.06 Total: -9.20 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.02 Total: 16.21 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -33.08 -10.78 -43.86 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075140819.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 155.412 kcal (2) G-P(sol) polarization free energy of solvation -33.079 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 122.334 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.782 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.861 kcal (6) G-S(sol) free energy of system = (1) + (5) 111.551 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds