Wall clock time and date at job start Tue Mar 31 2020 05:50:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31506 * 1 3 3 Si 1.86801 * 120.00293 * 2 1 4 4 H 1.48499 * 109.46966 * 269.99524 * 3 2 1 5 5 H 1.48494 * 109.46850 * 29.99489 * 3 2 1 6 6 H 1.48496 * 109.47126 * 149.99639 * 3 2 1 7 7 C 1.37879 * 119.99598 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00305 * 0.02562 * 7 2 1 9 9 C 1.50709 * 119.99776 * 180.02562 * 7 2 1 10 10 H 1.08997 * 109.47001 * 300.00694 * 9 7 2 11 11 O 1.42905 * 109.46992 * 59.99858 * 9 7 2 12 12 C 1.52999 * 109.46946 * 179.97438 * 9 7 2 13 13 N 1.46504 * 109.46907 * 180.02562 * 12 9 7 14 14 C 1.38604 * 120.00292 * 180.02562 * 13 12 9 15 15 C 1.39612 * 120.21131 * 6.31964 * 14 13 12 16 16 C 1.37802 * 120.36687 * 180.02562 * 15 14 13 17 17 C 1.38765 * 120.62731 * 359.94352 * 16 15 14 18 18 C 1.38886 * 120.02604 * 0.02849 * 17 16 15 19 19 C 1.39899 * 120.21867 * 186.29636 * 14 13 12 20 20 C 1.47370 * 120.62597 * 359.97438 * 19 14 13 21 21 O 1.21577 * 120.37756 * 13.83797 * 20 19 14 22 22 C 1.47976 * 119.23866 * 193.86090 * 20 19 14 23 23 C 1.39070 * 120.58361 * 166.15271 * 22 20 19 24 24 C 1.38420 * 119.80127 * 180.08348 * 23 22 20 25 25 C 1.38309 * 120.47505 * 359.95224 * 24 23 22 26 26 C 1.38410 * 120.45722 * 0.02562 * 25 24 23 27 27 C 1.39110 * 119.79539 * 0.02971 * 26 25 24 28 28 C 1.47903 * 120.59316 * 180.08693 * 18 17 16 29 29 O 1.21520 * 120.41755 * 346.25368 * 28 18 17 30 30 H 0.97007 * 120.00123 * 0.02562 * 1 2 3 31 31 H 0.96707 * 113.99738 * 60.00444 * 11 9 7 32 32 H 1.08996 * 109.47162 * 60.00347 * 12 9 7 33 33 H 1.08997 * 109.47020 * 299.99767 * 12 9 7 34 34 H 0.97003 * 120.00021 * 359.97438 * 13 12 9 35 35 H 1.07999 * 119.81836 * 359.97438 * 15 14 13 36 36 H 1.07995 * 119.68568 * 179.97438 * 16 15 14 37 37 H 1.07995 * 119.98046 * 180.02562 * 17 16 15 38 38 H 1.07997 * 120.09754 * 0.02600 * 23 22 20 39 39 H 1.08002 * 119.76850 * 179.97438 * 24 23 22 40 40 H 1.07991 * 119.77168 * 180.28651 * 25 24 23 41 41 H 1.08001 * 120.09751 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4466 2.6526 0.6999 6 1 3.5466 1.4401 0.7001 7 6 2.0044 -1.1941 0.0005 8 1 1.4644 -2.1294 0.0005 9 6 3.5115 -1.1942 0.0011 10 1 3.8751 -0.6804 -0.8888 11 8 3.9874 -0.5202 1.1680 12 6 4.0214 -2.6367 0.0023 13 7 5.4864 -2.6367 0.0035 14 6 6.1795 -3.8371 0.0041 15 6 5.4924 -5.0451 -0.1292 16 6 6.1781 -6.2403 -0.1284 17 6 7.5593 -6.2628 0.0033 18 6 8.2642 -5.0736 0.1367 19 6 7.5720 -3.8460 0.1378 20 6 8.3208 -2.5845 0.2789 21 8 7.7374 -1.5483 0.5317 22 6 9.7907 -2.5936 0.1088 23 6 10.4920 -1.4033 -0.0504 24 6 11.8667 -1.4308 -0.2100 25 6 12.5488 -2.6340 -0.2113 26 6 11.8661 -3.8276 -0.0535 27 6 10.4843 -3.8177 0.1069 28 6 9.7366 -5.0828 0.2760 29 8 10.3246 -6.1169 0.5245 30 1 -0.4851 0.8401 -0.0004 31 1 3.7017 -0.9236 1.9991 32 1 3.6584 -3.1511 -0.8875 33 1 3.6577 -3.1499 0.8925 34 1 5.9714 -1.7967 0.0030 35 1 4.4173 -5.0428 -0.2326 36 1 5.6355 -7.1683 -0.2318 37 1 8.0863 -7.2055 0.0022 38 1 9.9654 -0.4604 -0.0505 39 1 12.4107 -0.5060 -0.3340 40 1 13.6219 -2.6419 -0.3320 41 1 12.4046 -4.7638 -0.0550 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000075260650.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:50:49 Heat of formation + Delta-G solvation = -54.103592 kcal Electronic energy + Delta-G solvation = -27970.168433 eV Core-core repulsion = 23973.240186 eV Total energy + Delta-G solvation = -3996.928246 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 337.115 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.24562 -39.39261 -39.01402 -37.69584 -36.85028 -34.69180 -33.06174 -32.37361 -31.44336 -30.67992 -30.21028 -28.06686 -25.93521 -25.28241 -24.16021 -23.44868 -21.77775 -20.97505 -20.73746 -19.28678 -18.26049 -17.40888 -17.22995 -16.54006 -16.02154 -15.68371 -15.54664 -15.30052 -15.04054 -14.76854 -14.68982 -14.47752 -14.33290 -14.18533 -14.07919 -13.84973 -13.40687 -13.18629 -12.78915 -12.67516 -12.44265 -12.23849 -11.89545 -11.85214 -11.74578 -11.56209 -11.00745 -10.56748 -10.33110 -10.18488 -9.98753 -9.70750 -9.45199 -9.40731 -9.19640 -9.14220 -8.75491 -8.46184 -7.36877 -6.24406 -4.38180 -0.33159 0.65074 0.85148 1.33592 2.36978 2.44350 3.32513 3.36182 3.42677 3.49303 3.64352 3.68846 3.72865 3.91751 4.40085 4.44349 4.46570 4.68369 4.77281 4.87242 4.89608 4.97923 5.09133 5.19887 5.24709 5.30878 5.42392 5.54036 5.59607 5.64733 5.73702 5.81985 5.88409 5.91680 5.96716 6.07346 6.15826 6.30679 6.37073 6.38645 6.61994 7.08468 7.09994 7.29017 7.34862 7.50776 8.05004 8.15057 8.68271 8.87607 9.38597 10.85501 Molecular weight = 337.11amu Principal moments of inertia in cm(-1) A = 0.015190 B = 0.003264 C = 0.002721 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1842.902022 B = 8576.589165 C =10286.567197 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.087 3.913 3 Si 0.870 3.130 4 H -0.286 1.286 5 H -0.294 1.294 6 H -0.216 1.216 7 C -0.568 4.568 8 H 0.076 0.924 9 C 0.187 3.813 10 H 0.060 0.940 11 O -0.576 6.576 12 C 0.091 3.909 13 N -0.703 5.703 14 C 0.280 3.720 15 C -0.178 4.178 16 C -0.050 4.050 17 C -0.137 4.137 18 C -0.073 4.073 19 C -0.232 4.232 20 C 0.436 3.564 21 O -0.442 6.442 22 C -0.107 4.107 23 C -0.074 4.074 24 C -0.101 4.101 25 C -0.107 4.107 26 C -0.072 4.072 27 C -0.121 4.121 28 C 0.438 3.562 29 O -0.436 6.436 30 H 0.267 0.733 31 H 0.358 0.642 32 H 0.068 0.932 33 H 0.065 0.935 34 H 0.418 0.582 35 H 0.138 0.862 36 H 0.133 0.867 37 H 0.134 0.866 38 H 0.143 0.857 39 H 0.135 0.865 40 H 0.135 0.865 41 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.668 -9.181 -1.096 24.481 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.524 5.524 2 C -0.118 4.118 3 Si 0.696 3.304 4 H -0.213 1.213 5 H -0.220 1.220 6 H -0.139 1.139 7 C -0.605 4.605 8 H 0.094 0.906 9 C 0.129 3.871 10 H 0.078 0.922 11 O -0.382 6.382 12 C -0.032 4.032 13 N -0.332 5.332 14 C 0.164 3.836 15 C -0.200 4.200 16 C -0.069 4.069 17 C -0.158 4.158 18 C -0.075 4.075 19 C -0.239 4.239 20 C 0.318 3.682 21 O -0.319 6.319 22 C -0.108 4.108 23 C -0.092 4.092 24 C -0.119 4.119 25 C -0.125 4.125 26 C -0.090 4.090 27 C -0.122 4.122 28 C 0.317 3.683 29 O -0.311 6.311 30 H 0.077 0.923 31 H 0.205 0.795 32 H 0.086 0.914 33 H 0.083 0.917 34 H 0.263 0.737 35 H 0.156 0.844 36 H 0.151 0.849 37 H 0.152 0.848 38 H 0.161 0.839 39 H 0.153 0.847 40 H 0.153 0.847 41 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 22.551 -8.595 -1.273 24.167 hybrid contribution 0.000 0.734 0.218 0.765 sum 22.550 -7.861 -1.055 23.905 Atomic orbital electron populations 1.69936 1.06759 1.27721 1.47970 1.24959 0.94641 0.99995 0.92249 0.87031 0.83109 0.81743 0.78508 1.21297 1.22043 1.13875 1.21313 0.88979 0.95139 1.55088 0.90621 1.19958 0.94414 0.86399 0.86301 0.92196 1.86718 1.77773 1.57375 1.16367 1.22423 0.77342 1.02055 1.01402 1.45765 1.07589 1.06339 1.73535 1.17956 0.89332 0.87885 0.88388 1.21137 1.00931 0.90769 1.07166 1.21115 0.93632 0.97779 0.94383 1.21000 0.94037 0.97036 1.03684 1.19913 0.93156 0.93263 1.01133 1.19436 0.92448 0.93433 1.18616 1.20208 0.87357 0.87616 0.73061 1.90488 1.70719 1.34196 1.36449 1.20471 0.94845 0.93453 1.02045 1.21433 0.94189 0.97896 0.95663 1.21450 0.94032 0.98667 0.97716 1.21407 1.00580 0.92039 0.98446 1.21361 0.92440 0.99317 0.95907 1.20414 0.94640 0.93612 1.03560 1.20508 0.88137 0.87073 0.72554 1.90581 1.71791 1.33913 1.34833 0.92349 0.79500 0.91427 0.91681 0.73706 0.84432 0.84887 0.84844 0.83938 0.84689 0.84744 0.84181 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.24 13.96 55.43 0.77 -25.47 16 2 C 0.09 2.42 5.47 -17.82 -0.10 2.32 16 3 Si 0.87 21.28 26.99 -169.99 -4.59 16.70 16 4 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 5 H -0.29 -7.26 7.11 56.52 0.40 -6.85 16 6 H -0.22 -5.22 5.31 56.52 0.30 -4.92 16 7 C -0.57 -14.92 9.34 -34.44 -0.32 -15.24 16 8 H 0.08 2.12 7.99 -52.49 -0.42 1.70 16 9 C 0.19 4.13 2.40 -27.88 -0.07 4.06 16 10 H 0.06 1.38 7.57 -51.93 -0.39 0.99 16 11 O -0.58 -12.65 9.89 -35.23 -0.35 -13.00 16 12 C 0.09 1.65 4.55 -4.04 -0.02 1.64 16 13 N -0.70 -12.02 5.40 -58.46 -0.32 -12.34 16 14 C 0.28 4.27 6.64 -83.67 -0.56 3.72 16 15 C -0.18 -2.31 9.31 -39.23 -0.37 -2.68 16 16 C -0.05 -0.54 10.01 -39.55 -0.40 -0.94 16 17 C -0.14 -1.60 9.61 -39.15 -0.38 -1.98 16 18 C -0.07 -0.97 5.88 -104.68 -0.62 -1.59 16 19 C -0.23 -3.41 5.90 -104.54 -0.62 -4.03 16 20 C 0.44 6.51 6.98 -31.88 -0.22 6.28 16 21 O -0.44 -7.56 14.06 5.30 0.07 -7.49 16 22 C -0.11 -1.34 5.88 -104.67 -0.62 -1.95 16 23 C -0.07 -0.77 9.62 -39.21 -0.38 -1.15 16 24 C -0.10 -0.78 10.03 -39.49 -0.40 -1.18 16 25 C -0.11 -0.78 10.03 -39.49 -0.40 -1.18 16 26 C -0.07 -0.67 9.62 -39.19 -0.38 -1.05 16 27 C -0.12 -1.42 5.88 -104.68 -0.62 -2.04 16 28 C 0.44 5.65 7.03 -31.66 -0.22 5.43 16 29 O -0.44 -6.02 16.67 5.35 0.09 -5.93 16 30 H 0.27 7.44 8.31 -40.82 -0.34 7.10 16 31 H 0.36 7.02 9.04 45.56 0.41 7.43 16 32 H 0.07 1.18 7.70 -51.93 -0.40 0.78 16 33 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 34 H 0.42 7.72 5.17 -40.82 -0.21 7.51 16 35 H 0.14 1.69 6.72 -52.49 -0.35 1.34 16 36 H 0.13 1.05 8.06 -52.49 -0.42 0.62 16 37 H 0.13 1.36 7.75 -52.49 -0.41 0.96 16 38 H 0.14 1.44 7.76 -52.49 -0.41 1.03 16 39 H 0.14 0.68 8.06 -52.49 -0.42 0.25 16 40 H 0.13 0.58 8.06 -52.49 -0.42 0.16 16 41 H 0.14 1.12 7.76 -52.49 -0.41 0.71 16 LS Contribution 348.75 15.07 5.26 5.26 Total: -1.00 -31.69 348.75 -9.22 -40.91 By element: Atomic # 1 Polarization: 16.41 SS G_CDS: -3.51 Total: 12.90 kcal Atomic # 6 Polarization: -4.89 SS G_CDS: -6.65 Total: -11.54 kcal Atomic # 7 Polarization: -38.26 SS G_CDS: 0.46 Total: -37.81 kcal Atomic # 8 Polarization: -26.23 SS G_CDS: -0.18 Total: -26.42 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -4.59 Total: 16.70 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -31.69 -9.22 -40.91 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075260650.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.192 kcal (2) G-P(sol) polarization free energy of solvation -31.687 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.879 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.225 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.912 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.104 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds