Wall clock time and date at job start Tue Mar 31 2020 05:50:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86799 * 119.99906 * 2 1 4 4 H 1.48504 * 109.46985 * 269.99803 * 3 2 1 5 5 H 1.48505 * 109.47083 * 29.99624 * 3 2 1 6 6 H 1.48493 * 109.47448 * 149.99586 * 3 2 1 7 7 C 1.37875 * 120.00265 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00292 * 180.02562 * 7 2 1 9 9 C 1.50705 * 119.99891 * 359.97438 * 7 2 1 10 10 H 1.08994 * 109.46761 * 59.99873 * 9 7 2 11 11 O 1.42903 * 109.47214 * 300.00186 * 9 7 2 12 12 C 1.53000 * 109.46978 * 180.02562 * 9 7 2 13 13 N 1.46506 * 109.46935 * 185.00109 * 12 9 7 14 14 C 1.38602 * 119.99927 * 179.97438 * 13 12 9 15 15 C 1.39603 * 120.21400 * 353.66394 * 14 13 12 16 16 C 1.37807 * 120.36838 * 179.97438 * 15 14 13 17 17 C 1.38762 * 120.62635 * 0.02562 * 16 15 14 18 18 C 1.38882 * 120.02596 * 0.02562 * 17 16 15 19 19 C 1.39903 * 120.21478 * 173.39214 * 14 13 12 20 20 C 1.47365 * 120.63046 * 359.97438 * 19 14 13 21 21 O 1.21585 * 120.37131 * 346.16639 * 20 19 14 22 22 C 1.47974 * 119.25248 * 166.19133 * 20 19 14 23 23 C 1.39064 * 120.59341 * 193.75030 * 22 20 19 24 24 C 1.38421 * 119.80683 * 179.97438 * 23 22 20 25 25 C 1.38306 * 120.47256 * 0.04146 * 24 23 22 26 26 C 1.38408 * 120.45814 * 359.97438 * 25 24 23 27 27 C 1.39113 * 119.79723 * 0.02562 * 26 25 24 28 28 C 1.47707 * 120.55404 * 180.44633 * 27 26 25 29 29 O 1.21517 * 120.32606 * 345.82892 * 28 27 26 30 30 H 0.96998 * 120.00323 * 359.97438 * 1 2 3 31 31 H 0.96701 * 114.00136 * 299.99919 * 11 9 7 32 32 H 1.08993 * 109.47375 * 64.99905 * 12 9 7 33 33 H 1.09000 * 109.46948 * 304.99993 * 12 9 7 34 34 H 0.96998 * 120.00047 * 359.97438 * 13 12 9 35 35 H 1.07994 * 119.81847 * 359.95411 * 15 14 13 36 36 H 1.08002 * 119.68317 * 180.02562 * 16 15 14 37 37 H 1.07997 * 119.98377 * 180.02562 * 17 16 15 38 38 H 1.08006 * 120.09582 * 359.94912 * 23 22 20 39 39 H 1.08007 * 119.76277 * 180.02562 * 24 23 22 40 40 H 1.07993 * 119.77008 * 180.02562 * 25 24 23 41 41 H 1.08002 * 120.09647 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5466 1.4403 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0017 10 1 0.6241 -2.5574 -0.8880 11 8 0.4299 -2.5741 1.1688 12 6 2.2454 -3.6620 0.0027 13 7 1.5169 -4.9275 -0.1165 14 6 2.2107 -6.1272 -0.1381 15 6 3.6061 -6.1311 -0.1797 16 6 4.2992 -7.3220 -0.2007 17 6 3.6232 -8.5337 -0.1814 18 6 2.2351 -8.5546 -0.1411 19 6 1.5173 -7.3421 -0.1126 20 6 0.0447 -7.3652 -0.0620 21 8 -0.5770 -6.3560 0.2088 22 6 -0.6687 -8.6306 -0.3440 23 6 -2.0382 -8.6323 -0.5853 24 6 -2.6891 -9.8254 -0.8479 25 6 -1.9872 -11.0169 -0.8714 26 6 -0.6239 -11.0329 -0.6331 27 6 0.0455 -9.8426 -0.3675 28 6 1.5018 -9.8391 -0.1206 29 8 2.0878 -10.8787 0.1082 30 1 -0.4850 0.8400 0.0004 31 1 0.9223 -2.5282 1.9998 32 1 2.8116 -3.6551 0.9340 33 1 2.9295 -3.5558 -0.8392 34 1 0.5490 -4.9258 -0.1804 35 1 4.1455 -5.1956 -0.1958 36 1 5.3787 -7.3121 -0.2324 37 1 4.1768 -9.4608 -0.1977 38 1 -2.5925 -7.7055 -0.5674 39 1 -3.7527 -9.8259 -1.0356 40 1 -2.5063 -11.9410 -1.0779 41 1 -0.0816 -11.9667 -0.6524 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000075260651.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:50:52 Heat of formation + Delta-G solvation = -59.665997 kcal Electronic energy + Delta-G solvation = -27856.115936 eV Core-core repulsion = 23858.946485 eV Total energy + Delta-G solvation = -3997.169450 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 337.115 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.18022 -39.31975 -38.94521 -37.60900 -36.55263 -34.48762 -32.99741 -32.23538 -31.37953 -30.60677 -30.05064 -27.75460 -25.87232 -25.13351 -24.10372 -23.42028 -21.73075 -21.03227 -20.70071 -19.19274 -18.18207 -17.27563 -16.95662 -16.46731 -15.95770 -15.61288 -15.46722 -15.23217 -14.73154 -14.68558 -14.57134 -14.47745 -14.26299 -14.11966 -14.08984 -13.71646 -13.28124 -13.01774 -12.69619 -12.55569 -12.37586 -12.15418 -11.79358 -11.71156 -11.51244 -11.17186 -10.99962 -10.91700 -10.26338 -10.22499 -9.93208 -9.64118 -9.38956 -9.34400 -9.21681 -9.08241 -8.69930 -8.34597 -7.27638 -6.12916 -4.33201 -0.26877 0.71532 0.91291 1.40555 2.43180 2.51846 3.21137 3.28550 3.30210 3.42458 3.56690 3.73295 3.81143 3.98398 4.31199 4.46387 4.53066 4.74267 4.83387 4.92865 4.96236 5.04310 5.14759 5.25791 5.30860 5.37481 5.50380 5.60507 5.67730 5.82024 5.90783 5.92293 5.95874 6.02937 6.13485 6.18364 6.22372 6.40169 6.44893 6.53815 6.69631 7.14801 7.42743 7.44367 7.55777 7.71144 7.97051 8.18395 8.69247 9.24573 9.44316 10.91533 Molecular weight = 337.11amu Principal moments of inertia in cm(-1) A = 0.016775 B = 0.002944 C = 0.002539 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1668.798804 B = 9510.058850 C =11025.330678 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.855 5.855 2 C 0.081 3.919 3 Si 0.894 3.106 4 H -0.279 1.279 5 H -0.285 1.285 6 H -0.272 1.272 7 C -0.576 4.576 8 H 0.059 0.941 9 C 0.223 3.777 10 H 0.062 0.938 11 O -0.560 6.560 12 C 0.081 3.919 13 N -0.699 5.699 14 C 0.280 3.720 15 C -0.179 4.179 16 C -0.051 4.051 17 C -0.139 4.139 18 C -0.072 4.072 19 C -0.233 4.233 20 C 0.434 3.566 21 O -0.439 6.439 22 C -0.106 4.106 23 C -0.074 4.074 24 C -0.100 4.100 25 C -0.108 4.108 26 C -0.072 4.072 27 C -0.122 4.122 28 C 0.439 3.561 29 O -0.437 6.437 30 H 0.263 0.737 31 H 0.347 0.653 32 H 0.059 0.941 33 H 0.063 0.937 34 H 0.419 0.581 35 H 0.136 0.864 36 H 0.132 0.868 37 H 0.133 0.867 38 H 0.144 0.856 39 H 0.135 0.865 40 H 0.134 0.866 41 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.916 -20.877 -2.242 21.017 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.490 5.490 2 C -0.127 4.127 3 Si 0.721 3.279 4 H -0.204 1.204 5 H -0.210 1.210 6 H -0.197 1.197 7 C -0.614 4.614 8 H 0.078 0.922 9 C 0.165 3.835 10 H 0.079 0.921 11 O -0.363 6.363 12 C -0.042 4.042 13 N -0.327 5.327 14 C 0.163 3.837 15 C -0.201 4.201 16 C -0.070 4.070 17 C -0.160 4.160 18 C -0.074 4.074 19 C -0.240 4.240 20 C 0.316 3.684 21 O -0.315 6.315 22 C -0.107 4.107 23 C -0.092 4.092 24 C -0.118 4.118 25 C -0.126 4.126 26 C -0.090 4.090 27 C -0.123 4.123 28 C 0.318 3.682 29 O -0.313 6.313 30 H 0.072 0.928 31 H 0.191 0.809 32 H 0.077 0.923 33 H 0.081 0.919 34 H 0.264 0.736 35 H 0.154 0.846 36 H 0.150 0.850 37 H 0.151 0.849 38 H 0.161 0.839 39 H 0.153 0.847 40 H 0.152 0.848 41 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 0.266 -20.563 -2.420 20.707 hybrid contribution 0.639 1.037 0.265 1.247 sum 0.905 -19.527 -2.156 19.666 Atomic orbital electron populations 1.70075 1.06001 1.26764 1.46161 1.25036 0.94739 0.99320 0.93572 0.86590 0.79894 0.83145 0.78259 1.20447 1.21028 1.19723 1.21465 0.93213 0.90898 1.55849 0.92242 1.19564 0.88125 0.89094 0.86759 0.92067 1.86607 1.38182 1.96202 1.15275 1.22701 0.97348 0.83725 1.00450 1.45835 1.11667 1.02843 1.72359 1.17991 0.91534 0.85845 0.88282 1.21107 0.91910 0.99535 1.07580 1.21093 1.00011 0.91375 0.94507 1.20973 0.92271 0.98625 1.04133 1.19915 0.94279 0.92067 1.01132 1.19444 0.93385 0.92168 1.19007 1.20209 0.87925 0.86859 0.73448 1.90512 1.69785 1.34773 1.36453 1.20484 0.94738 0.93741 1.01717 1.21449 0.92788 0.99455 0.95487 1.21451 1.00626 0.92068 0.97669 1.21398 0.93923 0.98656 0.98593 1.21355 0.94448 0.97400 0.95828 1.20371 0.94733 0.93741 1.03489 1.20467 0.87272 0.87970 0.72515 1.90575 1.70822 1.34446 1.35431 0.92753 0.80920 0.92322 0.91861 0.73633 0.84576 0.85006 0.84915 0.83860 0.84685 0.84782 0.84222 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -24.65 12.84 55.43 0.71 -23.94 16 2 C 0.08 2.18 5.40 -17.82 -0.10 2.08 16 3 Si 0.89 20.45 29.54 -169.99 -5.02 15.43 16 4 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 5 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 6 H -0.27 -6.10 7.11 56.52 0.40 -5.69 16 7 C -0.58 -15.01 8.76 -34.44 -0.30 -15.31 16 8 H 0.06 1.48 7.74 -52.49 -0.41 1.08 16 9 C 0.22 5.38 2.86 -27.88 -0.08 5.30 16 10 H 0.06 1.65 8.14 -51.93 -0.42 1.22 16 11 O -0.56 -14.09 12.68 -35.23 -0.45 -14.53 16 12 C 0.08 1.56 4.53 -4.04 -0.02 1.54 16 13 N -0.70 -12.83 5.45 -58.46 -0.32 -13.15 16 14 C 0.28 4.51 6.64 -83.67 -0.56 3.96 16 15 C -0.18 -2.43 9.31 -39.23 -0.37 -2.80 16 16 C -0.05 -0.58 10.01 -39.55 -0.40 -0.97 16 17 C -0.14 -1.70 9.61 -39.15 -0.38 -2.08 16 18 C -0.07 -1.01 5.88 -104.67 -0.62 -1.62 16 19 C -0.23 -3.61 5.90 -104.54 -0.62 -4.23 16 20 C 0.43 6.88 6.99 -31.88 -0.22 6.65 16 21 O -0.44 -8.04 14.06 5.29 0.07 -7.96 16 22 C -0.11 -1.40 5.88 -104.67 -0.62 -2.01 16 23 C -0.07 -0.82 9.62 -39.21 -0.38 -1.20 16 24 C -0.10 -0.84 10.03 -39.49 -0.40 -1.23 16 25 C -0.11 -0.84 10.03 -39.49 -0.40 -1.24 16 26 C -0.07 -0.71 9.61 -39.19 -0.38 -1.08 16 27 C -0.12 -1.51 5.88 -104.77 -0.62 -2.12 16 28 C 0.44 5.90 7.02 -31.75 -0.22 5.68 16 29 O -0.44 -6.24 16.65 5.35 0.09 -6.16 16 30 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 31 H 0.35 7.76 9.04 45.56 0.41 8.18 16 32 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 33 H 0.06 1.15 7.70 -51.93 -0.40 0.75 16 34 H 0.42 8.41 5.31 -40.82 -0.22 8.19 16 35 H 0.14 1.73 6.72 -52.49 -0.35 1.38 16 36 H 0.13 1.08 8.06 -52.49 -0.42 0.66 16 37 H 0.13 1.42 7.75 -52.49 -0.41 1.01 16 38 H 0.14 1.56 7.76 -52.48 -0.41 1.16 16 39 H 0.14 0.75 8.06 -52.48 -0.42 0.33 16 40 H 0.13 0.64 8.06 -52.49 -0.42 0.22 16 41 H 0.14 1.18 7.75 -52.49 -0.41 0.77 16 LS Contribution 355.02 15.07 5.35 5.35 Total: -1.00 -31.29 355.02 -9.64 -40.93 By element: Atomic # 1 Polarization: 18.15 SS G_CDS: -3.43 Total: 14.72 kcal Atomic # 6 Polarization: -4.04 SS G_CDS: -6.64 Total: -10.69 kcal Atomic # 7 Polarization: -37.48 SS G_CDS: 0.39 Total: -37.09 kcal Atomic # 8 Polarization: -28.37 SS G_CDS: -0.28 Total: -28.65 kcal Atomic # 14 Polarization: 20.45 SS G_CDS: -5.02 Total: 15.43 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -31.29 -9.64 -40.93 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075260651.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.736 kcal (2) G-P(sol) polarization free energy of solvation -31.291 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.028 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.638 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.930 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.666 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds