Wall clock time and date at job start Tue Mar 31 2020 05:31:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 N 1.46504 * 109.47200 * 2 1 4 4 C 1.46495 * 120.00095 * 276.95490 * 3 2 1 5 5 C 1.53002 * 109.46992 * 269.99801 * 4 3 2 6 6 F 1.39896 * 109.47408 * 59.99663 * 5 4 3 7 7 F 1.39902 * 109.47012 * 180.02562 * 5 4 3 8 8 F 1.39908 * 109.46983 * 299.99941 * 5 4 3 9 9 C 1.34773 * 119.99632 * 96.95243 * 3 2 1 10 10 O 1.21282 * 120.00168 * 185.79472 * 9 3 2 11 11 C 1.50701 * 120.00434 * 5.78973 * 9 3 2 12 12 H 1.09000 * 109.50083 * 35.07141 * 11 9 3 13 13 C 1.53116 * 109.53690 * 274.97360 * 11 9 3 14 14 C 1.53124 * 109.16044 * 182.38290 * 13 11 9 15 15 C 1.53040 * 109.27850 * 57.65164 * 14 13 11 16 16 N 1.46847 * 109.51437 * 300.81546 * 15 14 13 17 17 C 1.46901 * 110.98977 * 185.84625 * 16 15 14 18 18 H 1.09003 * 109.46904 * 175.79955 * 17 16 15 19 19 C 1.52999 * 109.47279 * 295.79711 * 17 16 15 20 20 C 1.50700 * 109.46815 * 55.79896 * 17 16 15 21 21 H 1.07997 * 120.00579 * 0.02562 * 20 17 16 22 22 C 1.37882 * 119.99858 * 179.97438 * 20 17 16 23 23 N 1.31509 * 120.00129 * 180.02562 * 22 20 17 24 24 Si 1.86802 * 119.99684 * 0.02562 * 22 20 17 25 25 H 1.48498 * 109.47067 * 90.00467 * 24 22 20 26 26 H 1.48505 * 109.46596 * 209.99636 * 24 22 20 27 27 H 1.48490 * 109.47382 * 329.99584 * 24 22 20 28 28 C 1.46852 * 111.19487 * 61.76068 * 16 15 14 29 29 H 1.08996 * 109.47297 * 307.41565 * 1 2 3 30 30 H 1.08999 * 109.47501 * 67.41694 * 1 2 3 31 31 H 1.09003 * 109.46951 * 187.41429 * 1 2 3 32 32 H 1.08998 * 109.47164 * 240.00438 * 2 1 3 33 33 H 1.09004 * 109.47624 * 120.00464 * 2 1 3 34 34 H 1.09002 * 109.47388 * 29.99386 * 4 3 2 35 35 H 1.09002 * 109.47186 * 150.00172 * 4 3 2 36 36 H 1.08992 * 109.52523 * 302.28613 * 13 11 9 37 37 H 1.08998 * 109.52713 * 62.41605 * 13 11 9 38 38 H 1.08997 * 109.50518 * 177.59593 * 14 13 11 39 39 H 1.09003 * 109.50076 * 297.67025 * 14 13 11 40 40 H 1.09001 * 109.45952 * 60.83764 * 15 14 13 41 41 H 1.09000 * 109.46078 * 180.81809 * 15 14 13 42 42 H 1.08998 * 109.46903 * 179.97438 * 19 17 16 43 43 H 1.08997 * 109.47156 * 300.00076 * 19 17 16 44 44 H 1.09003 * 109.46953 * 60.00274 * 19 17 16 45 45 H 0.96992 * 120.00326 * 180.02562 * 23 22 20 46 46 H 1.08998 * 109.45918 * 178.23254 * 28 16 15 47 47 H 1.08996 * 109.46336 * 58.25032 * 28 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1176 2.1231 -1.2593 5 6 3.5023 1.9040 -1.8724 6 9 3.6930 0.5401 -2.1182 7 9 3.5973 2.6129 -3.0747 8 9 4.4828 2.3593 -0.9843 9 6 2.3761 1.9694 1.1586 10 8 2.6799 3.1434 1.1742 11 6 2.3986 1.1684 2.4349 12 1 2.7170 0.1485 2.2189 13 6 0.9969 1.1467 3.0506 14 6 1.0420 0.3816 4.3763 15 6 2.0577 1.0458 5.3087 16 7 3.3822 1.0407 4.6746 17 6 4.4089 1.5449 5.5965 18 1 5.3899 1.4608 5.1288 19 6 4.1240 3.0120 5.9240 20 6 4.3863 0.7331 6.8659 21 1 3.6802 -0.0766 6.9767 22 6 5.2677 1.0235 7.8857 23 7 5.2484 0.3148 8.9933 24 14 6.4894 2.4235 7.6938 25 1 5.8821 3.6826 8.1949 26 1 7.7159 2.1206 8.4744 27 1 6.8415 2.5802 6.2598 28 6 3.3749 1.8097 3.4236 29 1 -0.3634 0.6244 0.8162 30 1 -0.3634 0.3946 -0.9488 31 1 -0.3633 -1.0191 0.1326 32 1 1.8933 -0.5138 -0.8900 33 1 1.8934 -0.5139 0.8899 34 1 1.3538 1.7683 -1.9513 35 1 1.9692 3.1858 -1.0677 36 1 0.6624 2.1682 3.2309 37 1 0.3064 0.6525 2.3672 38 1 0.0560 0.3992 4.8404 39 1 1.3384 -0.6509 4.1906 40 1 1.7527 2.0737 5.5048 41 1 2.1029 0.4947 6.2480 42 1 4.8856 3.3859 6.6084 43 1 4.1404 3.5991 5.0058 44 1 3.1430 3.0960 6.3917 45 1 5.8682 0.5193 9.7108 46 1 4.3766 1.8137 2.9939 47 1 3.0636 2.8340 3.6287 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000075503991.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:31:07 Heat of formation + Delta-G solvation = -177.277734 kcal Electronic energy + Delta-G solvation = -31580.766980 eV Core-core repulsion = 26962.883599 eV Total energy + Delta-G solvation = -4617.883381 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.177 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -50.28974 -47.85468 -47.72665 -40.64047 -38.32405 -36.45478 -34.62164 -32.24441 -31.75770 -30.82303 -29.27058 -28.84716 -25.34360 -24.49180 -23.91936 -23.74070 -22.61932 -20.93629 -19.48365 -18.86106 -18.76197 -18.63223 -17.71737 -17.14869 -16.59858 -16.47266 -15.58844 -14.89900 -14.76923 -14.70622 -14.59797 -14.33855 -14.23431 -14.16288 -13.94252 -13.92005 -13.87500 -13.70948 -13.41006 -13.05861 -12.92659 -12.83396 -12.49274 -12.33136 -12.28852 -12.16106 -11.89514 -11.70645 -11.61625 -11.23661 -10.87264 -10.73749 -10.52214 -10.32447 -10.09412 -9.80411 -9.68078 -9.46966 -9.27460 -8.94873 -8.58023 -7.33927 -6.06766 -4.05198 2.15860 2.39314 2.70275 3.28213 3.39767 3.41096 3.55269 3.70765 3.98568 4.25427 4.41060 4.50621 4.64708 4.73452 4.79210 4.91403 4.95563 5.02583 5.09206 5.24746 5.29560 5.30845 5.46001 5.48954 5.69212 5.71409 5.90915 5.95032 6.04005 6.11536 6.14248 6.19763 6.24195 6.33284 6.43123 6.55833 6.68152 6.74553 6.89858 6.95395 7.25577 7.62078 7.87417 7.95753 8.10474 8.64823 8.98671 9.55721 11.05844 Molecular weight = 336.18amu Principal moments of inertia in cm(-1) A = 0.016612 B = 0.003324 C = 0.002971 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1685.119105 B = 8421.130969 C = 9422.856567 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.094 3.906 3 N -0.616 5.616 4 C 0.075 3.925 5 C 0.432 3.568 6 F -0.184 7.184 7 F -0.184 7.184 8 F -0.173 7.173 9 C 0.526 3.474 10 O -0.520 6.520 11 C -0.099 4.099 12 H 0.102 0.898 13 C -0.111 4.111 14 C -0.115 4.115 15 C 0.056 3.944 16 N -0.519 5.519 17 C 0.183 3.817 18 H 0.041 0.959 19 C -0.187 4.187 20 C -0.505 4.505 21 H 0.084 0.916 22 C 0.071 3.929 23 N -0.900 5.900 24 Si 0.885 3.115 25 H -0.281 1.281 26 H -0.297 1.297 27 H -0.267 1.267 28 C 0.069 3.931 29 H 0.067 0.933 30 H 0.056 0.944 31 H 0.073 0.927 32 H 0.083 0.917 33 H 0.098 0.902 34 H 0.121 0.879 35 H 0.128 0.872 36 H 0.063 0.937 37 H 0.068 0.932 38 H 0.064 0.936 39 H 0.070 0.930 40 H 0.025 0.975 41 H 0.096 0.904 42 H 0.044 0.956 43 H 0.032 0.968 44 H 0.053 0.947 45 H 0.264 0.736 46 H 0.068 0.932 47 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.544 0.008 -22.581 25.361 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C -0.028 4.028 3 N -0.351 5.351 4 C -0.051 4.051 5 C 0.376 3.624 6 F -0.166 7.166 7 F -0.166 7.166 8 F -0.154 7.154 9 C 0.315 3.685 10 O -0.393 6.393 11 C -0.121 4.121 12 H 0.120 0.880 13 C -0.149 4.149 14 C -0.152 4.152 15 C -0.072 4.072 16 N -0.243 5.243 17 C 0.075 3.925 18 H 0.059 0.941 19 C -0.245 4.245 20 C -0.543 4.543 21 H 0.102 0.898 22 C -0.130 4.130 23 N -0.538 5.538 24 Si 0.716 3.284 25 H -0.208 1.208 26 H -0.225 1.225 27 H -0.193 1.193 28 C -0.060 4.060 29 H 0.086 0.914 30 H 0.075 0.925 31 H 0.092 0.908 32 H 0.101 0.899 33 H 0.116 0.884 34 H 0.139 0.861 35 H 0.146 0.854 36 H 0.081 0.919 37 H 0.086 0.914 38 H 0.082 0.918 39 H 0.089 0.911 40 H 0.043 0.957 41 H 0.114 0.886 42 H 0.062 0.938 43 H 0.051 0.949 44 H 0.072 0.928 45 H 0.074 0.926 46 H 0.087 0.913 47 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -11.137 0.120 -22.479 25.087 hybrid contribution 0.824 1.615 -0.065 1.814 sum -10.314 1.736 -22.544 24.852 Atomic orbital electron populations 1.22328 0.95223 1.03118 1.02650 1.21883 0.94928 0.81171 1.04806 1.47974 1.66817 1.15119 1.05165 1.22499 0.91548 1.02719 0.88352 1.21360 0.90528 0.73953 0.76536 1.93168 1.96242 1.32711 1.94449 1.93184 1.96875 1.78752 1.47748 1.93260 1.65539 1.88670 1.67976 1.21144 0.74713 0.87819 0.84792 1.90710 1.46430 1.16254 1.85954 1.21396 0.98849 1.00440 0.91368 0.87984 1.21687 0.93824 1.01474 0.97936 1.21626 0.99051 1.00076 0.94494 1.22081 0.88116 0.98789 0.98237 1.62075 1.05454 1.52706 1.04038 1.19750 0.90814 0.89612 0.92322 0.94148 1.22814 1.01519 1.00866 0.99327 1.20964 1.19812 1.16475 0.97033 0.89805 1.24896 0.96826 0.96197 0.95117 1.69868 1.37867 1.40184 1.05875 0.86903 0.80677 0.82512 0.78338 1.20794 1.22462 1.19267 1.21829 0.97697 0.95500 0.91012 0.91393 0.92451 0.90806 0.89865 0.88384 0.86108 0.85400 0.91872 0.91383 0.91751 0.91085 0.95694 0.88629 0.93775 0.94906 0.92761 0.92635 0.91313 0.93944 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -0.94 9.79 37.15 0.36 -0.58 16 2 C 0.09 0.65 5.63 -4.04 -0.02 0.63 16 3 N -0.62 -5.93 2.39 -173.69 -0.42 -6.34 16 4 C 0.08 0.61 5.50 -4.04 -0.02 0.59 16 5 C 0.43 4.40 3.29 37.16 0.12 4.53 16 6 F -0.18 -1.87 16.12 2.25 0.04 -1.83 16 7 F -0.18 -1.83 17.32 2.25 0.04 -1.79 16 8 F -0.17 -2.37 16.50 2.25 0.04 -2.33 16 9 C 0.53 6.97 6.31 -10.99 -0.07 6.91 16 10 O -0.52 -8.67 15.35 5.56 0.09 -8.58 16 11 C -0.10 -1.34 1.87 -91.69 -0.17 -1.51 16 12 H 0.10 1.28 6.26 -51.93 -0.32 0.95 16 13 C -0.11 -1.33 5.21 -26.61 -0.14 -1.47 16 14 C -0.11 -1.55 6.09 -26.65 -0.16 -1.71 16 15 C 0.06 1.01 4.75 -3.83 -0.02 0.99 16 16 N -0.52 -10.38 4.67 -228.08 -1.07 -11.45 16 17 C 0.18 4.31 2.00 -68.86 -0.14 4.17 16 18 H 0.04 1.01 7.20 -51.93 -0.37 0.64 16 19 C -0.19 -4.17 7.99 37.16 0.30 -3.88 16 20 C -0.50 -13.78 8.44 -34.44 -0.29 -14.07 16 21 H 0.08 2.45 6.64 -52.49 -0.35 2.10 16 22 C 0.07 2.03 5.45 -17.82 -0.10 1.93 16 23 N -0.90 -27.10 13.96 55.43 0.77 -26.32 16 24 Si 0.88 22.11 24.37 -169.99 -4.14 17.97 16 25 H -0.28 -6.89 6.87 56.52 0.39 -6.50 16 26 H -0.30 -7.44 7.11 56.52 0.40 -7.03 16 27 H -0.27 -6.50 6.53 56.52 0.37 -6.13 16 28 C 0.07 1.21 3.72 -3.83 -0.01 1.20 16 29 H 0.07 0.44 5.84 -51.93 -0.30 0.14 16 30 H 0.06 0.26 8.14 -51.93 -0.42 -0.16 16 31 H 0.07 0.32 8.14 -51.93 -0.42 -0.11 16 32 H 0.08 0.49 7.15 -51.93 -0.37 0.12 16 33 H 0.10 0.71 5.60 -51.93 -0.29 0.42 16 34 H 0.12 0.55 8.07 -51.93 -0.42 0.13 16 35 H 0.13 1.11 7.35 -51.93 -0.38 0.72 16 36 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 37 H 0.07 0.62 4.86 -51.93 -0.25 0.37 16 38 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 39 H 0.07 0.95 8.14 -51.93 -0.42 0.52 16 40 H 0.02 0.46 6.71 -51.93 -0.35 0.11 16 41 H 0.10 1.98 6.02 -51.93 -0.31 1.67 16 42 H 0.04 1.03 3.27 -51.93 -0.17 0.86 16 43 H 0.03 0.67 6.54 -51.93 -0.34 0.33 16 44 H 0.05 1.18 6.63 -51.93 -0.34 0.84 16 45 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 46 H 0.07 1.28 8.12 -51.93 -0.42 0.86 16 47 H 0.04 0.81 6.33 -51.93 -0.33 0.48 16 LS Contribution 358.84 15.07 5.41 5.41 Total: -1.00 -32.09 358.84 -6.23 -38.32 By element: Atomic # 1 Polarization: 5.85 SS G_CDS: -6.63 Total: -0.78 kcal Atomic # 6 Polarization: -1.91 SS G_CDS: -0.36 Total: -2.27 kcal Atomic # 7 Polarization: -43.41 SS G_CDS: -0.71 Total: -44.11 kcal Atomic # 8 Polarization: -8.67 SS G_CDS: 0.09 Total: -8.58 kcal Atomic # 9 Polarization: -6.07 SS G_CDS: 0.11 Total: -5.96 kcal Atomic # 14 Polarization: 22.11 SS G_CDS: -4.14 Total: 17.97 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -32.09 -6.23 -38.32 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075503991.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -138.954 kcal (2) G-P(sol) polarization free energy of solvation -32.090 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -171.044 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.234 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.324 kcal (6) G-S(sol) free energy of system = (1) + (5) -177.278 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds