Wall clock time and date at job start Tue Mar 31 2020 05:31:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46497 * 109.47490 * 2 1 4 4 C 1.46504 * 120.00235 * 263.71533 * 3 2 1 5 5 C 1.53001 * 109.46794 * 269.99997 * 4 3 2 6 6 F 1.39898 * 109.47287 * 60.00009 * 5 4 3 7 7 F 1.39901 * 109.46734 * 179.97438 * 5 4 3 8 8 F 1.39899 * 109.46784 * 299.99749 * 5 4 3 9 9 C 1.34779 * 120.00042 * 83.71154 * 3 2 1 10 10 O 1.21278 * 120.00120 * 184.88618 * 9 3 2 11 11 C 1.50706 * 119.99661 * 4.88763 * 9 3 2 12 12 H 1.09000 * 109.50151 * 315.33516 * 11 9 3 13 13 C 1.53112 * 109.50647 * 75.42067 * 11 9 3 14 14 C 1.53121 * 109.16335 * 177.59554 * 13 11 9 15 15 C 1.53036 * 109.27489 * 302.34688 * 14 13 11 16 16 N 1.46839 * 109.52816 * 59.17566 * 15 14 13 17 17 C 1.46901 * 111.00218 * 174.16081 * 16 15 14 18 18 H 1.09002 * 109.47024 * 186.04585 * 17 16 15 19 19 C 1.52997 * 109.46753 * 306.04664 * 17 16 15 20 20 C 1.50698 * 109.47030 * 66.04796 * 17 16 15 21 21 H 1.08004 * 120.00193 * 0.02562 * 20 17 16 22 22 C 1.37879 * 119.99743 * 180.02562 * 20 17 16 23 23 N 1.31512 * 119.99762 * 180.02562 * 22 20 17 24 24 Si 1.86798 * 120.00016 * 359.97438 * 22 20 17 25 25 H 1.48501 * 109.47113 * 90.00456 * 24 22 20 26 26 H 1.48504 * 109.46846 * 210.00148 * 24 22 20 27 27 H 1.48494 * 109.47438 * 330.00052 * 24 22 20 28 28 C 1.46846 * 111.20047 * 298.26181 * 16 15 14 29 29 H 1.08998 * 109.47066 * 299.99954 * 1 2 3 30 30 H 1.09003 * 109.47138 * 59.99939 * 1 2 3 31 31 H 1.09000 * 109.47486 * 179.97438 * 1 2 3 32 32 H 1.09002 * 109.46603 * 239.99864 * 2 1 3 33 33 H 1.09001 * 109.46789 * 120.00450 * 2 1 3 34 34 H 1.09001 * 109.46707 * 29.99766 * 4 3 2 35 35 H 1.08997 * 109.46930 * 150.00032 * 4 3 2 36 36 H 1.09001 * 109.52352 * 57.68582 * 13 11 9 37 37 H 1.09010 * 109.57448 * 297.52737 * 13 11 9 38 38 H 1.08996 * 109.50355 * 182.40465 * 14 13 11 39 39 H 1.09005 * 109.49975 * 62.28116 * 14 13 11 40 40 H 1.09001 * 109.45931 * 299.16129 * 15 14 13 41 41 H 1.09003 * 109.45534 * 179.19221 * 15 14 13 42 42 H 1.09005 * 109.46534 * 180.02562 * 19 17 16 43 43 H 1.09000 * 109.47314 * 299.99810 * 19 17 16 44 44 H 1.08993 * 109.47479 * 60.00400 * 19 17 16 45 45 H 0.97004 * 120.00323 * 179.97438 * 23 22 20 46 46 H 1.08997 * 109.46700 * 181.75468 * 28 16 15 47 47 H 1.09004 * 109.45879 * 301.72481 * 28 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.3936 2.0255 -1.2611 5 6 3.8760 1.7717 -1.5421 6 9 4.1037 0.3946 -1.6362 7 9 4.2341 2.3866 -2.7467 8 9 4.6453 2.3016 -0.5007 9 6 2.1225 2.0591 1.1602 10 8 2.4417 3.2291 1.1523 11 6 1.8423 1.3632 2.4673 12 1 0.9357 0.7653 2.3742 13 6 3.0205 0.4531 2.8248 14 6 2.7546 -0.2035 4.1822 15 6 2.5421 0.8849 5.2369 16 7 1.4040 1.7281 4.8496 17 6 1.0836 2.6976 5.9057 18 1 0.1735 3.2358 5.6409 19 6 0.8727 1.9590 7.2289 20 6 2.2209 3.6754 6.0519 21 1 3.0943 3.5859 5.4228 22 6 2.1465 4.6843 6.9887 23 7 3.1388 5.5379 7.1159 24 14 0.6357 4.8395 8.0762 25 1 0.8328 4.0430 9.3140 26 1 0.4273 6.2658 8.4333 27 1 -0.5540 4.3331 7.3460 28 6 1.6562 2.4062 3.5717 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 1.8932 -0.5139 -0.8900 33 1 1.8932 -0.5139 0.8900 34 1 1.7940 1.6126 -2.0724 35 1 2.2161 3.0984 -1.1877 36 1 3.9344 1.0447 2.8790 37 1 3.1306 -0.3182 2.0624 38 1 3.6091 -0.8196 4.4621 39 1 1.8622 -0.8260 4.1168 40 1 3.4399 1.4984 5.3116 41 1 2.3383 0.4206 6.2018 42 1 0.6344 2.6784 8.0125 43 1 0.0500 1.2518 7.1231 44 1 1.7827 1.4209 7.4937 45 1 3.0864 6.2480 7.7748 46 1 0.8091 3.0469 3.3271 47 1 2.5582 3.0126 3.6542 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000075503992.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:31:10 Heat of formation + Delta-G solvation = -179.696043 kcal Electronic energy + Delta-G solvation = -31770.528660 eV Core-core repulsion = 27152.540413 eV Total energy + Delta-G solvation = -4617.988247 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.177 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -50.20506 -47.77263 -47.63710 -40.48624 -38.17263 -36.29890 -34.55367 -32.19083 -31.71414 -30.59553 -29.51101 -28.61194 -25.25281 -24.36190 -23.94591 -23.51944 -22.43398 -20.69433 -19.32846 -19.06051 -18.64915 -18.58187 -17.63076 -16.98385 -16.52457 -16.30474 -15.52895 -15.01164 -14.67185 -14.58491 -14.50896 -14.17548 -14.15343 -14.09490 -13.86611 -13.83440 -13.78289 -13.47381 -13.22137 -13.14588 -12.82836 -12.70564 -12.44297 -12.30328 -12.13370 -12.11205 -11.90420 -11.48732 -11.36150 -11.05283 -10.83228 -10.70032 -10.45625 -10.21265 -9.90505 -9.82544 -9.60423 -9.47996 -9.26948 -9.13098 -8.55232 -7.19166 -6.06968 -4.07770 2.29425 2.53377 2.82060 3.27137 3.38106 3.40497 3.64789 3.80909 4.07820 4.38128 4.40719 4.59339 4.74985 4.86896 4.89378 5.01400 5.06451 5.10779 5.21314 5.25641 5.37325 5.44448 5.52376 5.61011 5.76193 5.87869 5.97857 6.08463 6.12367 6.13132 6.29494 6.30536 6.41619 6.44364 6.62686 6.66733 6.81355 6.90369 7.03306 7.05016 7.22231 7.58562 8.03769 8.11093 8.14739 8.48664 8.95730 9.55701 11.06086 Molecular weight = 336.18amu Principal moments of inertia in cm(-1) A = 0.017354 B = 0.003396 C = 0.003161 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1613.118314 B = 8244.187057 C = 8857.133851 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.097 3.903 3 N -0.619 5.619 4 C 0.075 3.925 5 C 0.432 3.568 6 F -0.186 7.186 7 F -0.184 7.184 8 F -0.172 7.172 9 C 0.524 3.476 10 O -0.509 6.509 11 C -0.100 4.100 12 H 0.099 0.901 13 C -0.109 4.109 14 C -0.112 4.112 15 C 0.051 3.949 16 N -0.528 5.528 17 C 0.176 3.824 18 H 0.039 0.961 19 C -0.146 4.146 20 C -0.543 4.543 21 H 0.077 0.923 22 C 0.074 3.926 23 N -0.897 5.897 24 Si 0.889 3.111 25 H -0.280 1.280 26 H -0.299 1.299 27 H -0.266 1.266 28 C 0.083 3.917 29 H 0.065 0.935 30 H 0.058 0.942 31 H 0.071 0.929 32 H 0.083 0.917 33 H 0.092 0.908 34 H 0.120 0.880 35 H 0.129 0.871 36 H 0.066 0.934 37 H 0.061 0.939 38 H 0.063 0.937 39 H 0.066 0.934 40 H 0.043 0.957 41 H 0.073 0.927 42 H 0.040 0.960 43 H 0.036 0.964 44 H 0.054 0.946 45 H 0.263 0.737 46 H 0.068 0.932 47 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.922 -14.761 -17.565 23.277 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C -0.025 4.025 3 N -0.354 5.354 4 C -0.051 4.051 5 C 0.376 3.624 6 F -0.168 7.168 7 F -0.166 7.166 8 F -0.153 7.153 9 C 0.312 3.688 10 O -0.382 6.382 11 C -0.122 4.122 12 H 0.117 0.883 13 C -0.147 4.147 14 C -0.150 4.150 15 C -0.077 4.077 16 N -0.252 5.252 17 C 0.068 3.932 18 H 0.057 0.943 19 C -0.203 4.203 20 C -0.582 4.582 21 H 0.095 0.905 22 C -0.129 4.129 23 N -0.535 5.535 24 Si 0.720 3.280 25 H -0.207 1.207 26 H -0.226 1.226 27 H -0.191 1.191 28 C -0.046 4.046 29 H 0.084 0.916 30 H 0.077 0.923 31 H 0.089 0.911 32 H 0.102 0.898 33 H 0.110 0.890 34 H 0.138 0.862 35 H 0.147 0.853 36 H 0.085 0.915 37 H 0.080 0.920 38 H 0.081 0.919 39 H 0.084 0.916 40 H 0.062 0.938 41 H 0.092 0.908 42 H 0.059 0.941 43 H 0.055 0.945 44 H 0.073 0.927 45 H 0.073 0.927 46 H 0.086 0.914 47 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -4.065 -14.256 -17.493 22.930 hybrid contribution 0.312 0.707 0.589 0.972 sum -3.754 -13.549 -16.903 21.986 Atomic orbital electron populations 1.22255 0.95197 1.02743 1.03009 1.21868 0.94952 0.81331 1.04376 1.47992 1.66985 1.15198 1.05207 1.22511 0.88487 1.04196 0.89923 1.21386 0.92787 0.74001 0.74258 1.93158 1.95948 1.31707 1.95955 1.93181 1.93475 1.83055 1.46890 1.93265 1.78122 1.86040 1.57906 1.21148 0.75599 0.86860 0.85163 1.90760 1.44750 1.15969 1.86702 1.21450 1.00651 0.98742 0.91352 0.88296 1.21587 0.97261 0.97847 0.97977 1.21602 1.01125 0.98051 0.94256 1.22034 0.94073 0.94305 0.97282 1.62339 1.36743 1.23099 1.03033 1.19679 0.96839 0.89462 0.87176 0.94292 1.22213 1.00009 0.99357 0.98768 1.21602 1.04211 1.11825 1.20563 0.90537 1.24983 0.95796 0.95269 0.96865 1.69923 1.31601 1.16758 1.35187 0.86835 0.84280 0.75812 0.81093 1.20676 1.22628 1.19072 1.21627 1.02300 0.93097 0.87588 0.91551 0.92327 0.91050 0.89835 0.88983 0.86199 0.85339 0.91502 0.92031 0.91872 0.91560 0.93839 0.90847 0.94123 0.94481 0.92726 0.92710 0.91378 0.92306 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.15 10.03 37.16 0.37 -0.78 16 2 C 0.10 0.73 5.49 -4.05 -0.02 0.71 16 3 N -0.62 -6.60 2.41 -173.69 -0.42 -7.02 16 4 C 0.08 0.69 5.44 -4.04 -0.02 0.67 16 5 C 0.43 4.75 3.29 37.16 0.12 4.87 16 6 F -0.19 -1.95 16.36 2.25 0.04 -1.92 16 7 F -0.18 -1.99 17.32 2.25 0.04 -1.95 16 8 F -0.17 -2.53 16.46 2.25 0.04 -2.49 16 9 C 0.52 7.77 6.36 -10.98 -0.07 7.70 16 10 O -0.51 -9.73 15.20 5.56 0.08 -9.65 16 11 C -0.10 -1.47 1.85 -91.69 -0.17 -1.64 16 12 H 0.10 1.25 5.94 -51.93 -0.31 0.94 16 13 C -0.11 -1.47 5.02 -26.61 -0.13 -1.60 16 14 C -0.11 -1.53 6.09 -26.65 -0.16 -1.69 16 15 C 0.05 0.93 4.76 -3.84 -0.02 0.91 16 16 N -0.53 -10.47 4.69 -228.09 -1.07 -11.54 16 17 C 0.18 4.10 2.05 -68.87 -0.14 3.96 16 18 H 0.04 0.96 7.20 -51.93 -0.37 0.58 16 19 C -0.15 -3.11 8.25 37.16 0.31 -2.81 16 20 C -0.54 -15.02 7.77 -34.44 -0.27 -15.29 16 21 H 0.08 2.34 6.09 -52.48 -0.32 2.02 16 22 C 0.07 2.12 5.45 -17.82 -0.10 2.02 16 23 N -0.90 -27.66 13.96 55.43 0.77 -26.89 16 24 Si 0.89 22.00 24.37 -169.99 -4.14 17.86 16 25 H -0.28 -6.72 6.87 56.52 0.39 -6.33 16 26 H -0.30 -7.46 7.11 56.52 0.40 -7.06 16 27 H -0.27 -6.29 6.53 56.52 0.37 -5.92 16 28 C 0.08 1.62 3.72 -3.83 -0.01 1.61 16 29 H 0.07 0.55 6.81 -51.93 -0.35 0.19 16 30 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 31 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 32 H 0.08 0.49 7.40 -51.93 -0.38 0.11 16 33 H 0.09 0.70 4.78 -51.93 -0.25 0.45 16 34 H 0.12 0.65 8.07 -51.93 -0.42 0.23 16 35 H 0.13 1.30 7.36 -51.93 -0.38 0.92 16 36 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 37 H 0.06 0.66 6.06 -51.92 -0.31 0.35 16 38 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 39 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 40 H 0.04 0.92 7.03 -51.93 -0.37 0.55 16 41 H 0.07 1.30 5.87 -51.93 -0.30 0.99 16 42 H 0.04 0.91 3.27 -51.93 -0.17 0.74 16 43 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 44 H 0.05 1.12 6.20 -51.93 -0.32 0.80 16 45 H 0.26 7.64 8.31 -40.82 -0.34 7.30 16 46 H 0.07 1.39 8.12 -51.93 -0.42 0.97 16 47 H 0.06 1.39 6.33 -51.93 -0.33 1.06 16 LS Contribution 360.53 15.07 5.43 5.43 Total: -1.00 -32.86 360.53 -6.28 -39.13 By element: Atomic # 1 Polarization: 7.14 SS G_CDS: -6.73 Total: 0.40 kcal Atomic # 6 Polarization: -1.05 SS G_CDS: -0.32 Total: -1.37 kcal Atomic # 7 Polarization: -44.73 SS G_CDS: -0.72 Total: -45.44 kcal Atomic # 8 Polarization: -9.73 SS G_CDS: 0.08 Total: -9.65 kcal Atomic # 9 Polarization: -6.48 SS G_CDS: 0.11 Total: -6.36 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -4.14 Total: 17.86 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -32.86 -6.28 -39.13 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075503992.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -140.563 kcal (2) G-P(sol) polarization free energy of solvation -32.856 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -173.419 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.277 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.133 kcal (6) G-S(sol) free energy of system = (1) + (5) -179.696 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds