Wall clock time and date at job start Tue Mar 31 2020 05:32:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 C 1.50708 * 109.47141 * 239.99887 * 2 1 3 5 5 N 1.31126 * 126.55311 * 239.71505 * 4 2 1 6 6 C 1.34493 * 105.61596 * 179.97438 * 5 4 2 7 7 C 1.50695 * 126.28888 * 180.12924 * 6 5 4 8 8 H 1.09001 * 110.37195 * 16.12889 * 7 6 5 9 9 C 1.54385 * 110.41068 * 253.78029 * 7 6 5 10 10 C 1.54261 * 105.05837 * 217.36880 * 9 7 6 11 11 C 1.54383 * 105.06215 * 359.97438 * 10 9 7 12 12 N 1.48559 * 104.59425 * 23.85496 * 11 10 9 13 13 C 1.46902 * 110.99806 * 200.96159 * 12 11 10 14 14 C 1.50706 * 109.46846 * 285.41632 * 13 12 11 15 15 O 1.21279 * 120.00107 * 0.02562 * 14 13 12 16 16 N 1.34774 * 119.99584 * 180.02562 * 14 13 12 17 17 C 1.46495 * 120.00393 * 359.97438 * 16 14 13 18 18 C 1.46504 * 119.99543 * 179.97438 * 16 14 13 19 19 C 1.50708 * 109.46857 * 90.00280 * 18 16 14 20 20 H 1.07998 * 119.99918 * 359.97438 * 19 18 16 21 21 C 1.37875 * 119.99504 * 180.02562 * 19 18 16 22 22 N 1.31516 * 120.00252 * 359.97438 * 21 19 18 23 23 Si 1.86804 * 119.99697 * 180.02562 * 21 19 18 24 24 H 1.48497 * 109.47264 * 59.99549 * 23 21 19 25 25 H 1.48501 * 109.47027 * 179.97438 * 23 21 19 26 26 H 1.48503 * 109.46866 * 299.99295 * 23 21 19 27 27 N 1.29951 * 107.42063 * 0.34479 * 6 5 4 28 28 O 1.21293 * 110.25320 * 359.78532 * 27 6 5 29 29 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 30 30 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 31 31 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 32 32 H 1.09002 * 109.47153 * 120.00216 * 2 1 3 33 33 H 1.09001 * 109.47066 * 60.00169 * 3 2 1 34 34 H 1.08996 * 109.47747 * 179.97438 * 3 2 1 35 35 H 1.09002 * 109.47103 * 300.00247 * 3 2 1 36 36 H 1.08994 * 110.32264 * 336.26395 * 9 7 6 37 37 H 1.09000 * 110.32033 * 98.37016 * 9 7 6 38 38 H 1.09005 * 110.32325 * 118.89873 * 10 9 7 39 39 H 1.08999 * 110.32290 * 241.10209 * 10 9 7 40 40 H 1.09000 * 110.40954 * 142.63576 * 11 10 9 41 41 H 1.09000 * 110.40901 * 265.07179 * 11 10 9 42 42 H 1.09004 * 109.47370 * 45.41510 * 13 12 11 43 43 H 1.08992 * 109.47027 * 165.41867 * 13 12 11 44 44 H 1.08999 * 109.47241 * 89.99720 * 17 16 14 45 45 H 1.08997 * 109.47454 * 209.99849 * 17 16 14 46 46 H 1.08998 * 109.47117 * 329.99984 * 17 16 14 47 47 H 1.09002 * 109.46729 * 209.99751 * 18 16 14 48 48 H 1.08995 * 109.47332 * 330.00214 * 18 16 14 49 49 H 0.97002 * 119.99428 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0323 -0.7105 -1.2305 5 7 2.7935 -1.7778 -1.2600 6 6 2.9832 -2.0513 -2.5631 7 6 3.7910 -3.1918 -3.1266 8 1 3.9775 -3.9412 -2.3574 9 6 5.1241 -2.6724 -3.7067 10 6 5.3712 -3.5246 -4.9685 11 6 4.1670 -4.4876 -5.0445 12 7 3.0900 -3.8007 -4.2860 13 6 2.0677 -4.7570 -3.8405 14 6 1.2173 -5.1668 -5.0152 15 8 1.4410 -4.7078 -6.1153 16 7 0.2081 -6.0433 -4.8432 17 6 -0.0619 -6.5982 -3.5145 18 6 -0.6190 -6.4413 -5.9851 19 6 -0.0141 -7.6535 -6.6452 20 1 0.8956 -8.0841 -6.2536 21 6 -0.6216 -8.2121 -7.7497 22 7 -1.7292 -7.6874 -8.2268 23 14 0.1278 -9.7151 -8.5676 24 1 0.1907 -10.8310 -7.5898 25 1 -0.7105 -10.1184 -9.7251 26 1 1.4986 -9.3910 -9.0377 27 7 2.3458 -1.1486 -3.2469 28 8 1.7929 -0.3689 -2.5002 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 1.8933 -0.5139 0.8900 33 1 1.6768 1.9562 0.8900 34 1 3.1300 1.4424 0.0005 35 1 1.6767 1.9563 -0.8900 36 1 5.0365 -1.6190 -3.9724 37 1 5.9309 -2.8150 -2.9876 38 1 5.4049 -2.8893 -5.8537 39 1 6.2997 -4.0870 -4.8697 40 1 3.8654 -4.6382 -6.0810 41 1 4.4127 -5.4410 -4.5768 42 1 2.5529 -5.6372 -3.4185 43 1 1.4392 -4.2900 -3.0823 44 1 -0.7714 -5.9577 -2.9906 45 1 -0.4824 -7.5985 -3.6170 46 1 0.8673 -6.6510 -2.9472 47 1 -1.6249 -6.6798 -5.6394 48 1 -0.6660 -5.6222 -6.7027 49 1 -2.1567 -8.0807 -9.0036 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000075581735.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:32:12 Heat of formation + Delta-G solvation = 41.527603 kcal Electronic energy + Delta-G solvation = -29861.461332 eV Core-core repulsion = 25827.215554 eV Total energy + Delta-G solvation = -4034.245779 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -45.65935 -39.68028 -38.19438 -36.61075 -35.52336 -34.70272 -32.73858 -32.16559 -31.72317 -29.13599 -28.24008 -27.69225 -26.50882 -25.38617 -24.52531 -24.11065 -22.66345 -21.89685 -21.03799 -19.79655 -18.42255 -18.08885 -17.54899 -16.53933 -16.38365 -16.30754 -15.88515 -15.58130 -14.96046 -14.91987 -14.67628 -14.14303 -13.88773 -13.77852 -13.37710 -13.21303 -12.69831 -12.62997 -12.57007 -12.44026 -12.33603 -12.21239 -12.08768 -11.96850 -11.85254 -11.80302 -11.51474 -11.38770 -11.27502 -11.17881 -11.14063 -11.05870 -10.87100 -10.61734 -10.54351 -10.13504 -9.91413 -9.62151 -8.96313 -8.41573 -8.36947 -7.59487 -6.02132 -4.07108 1.11657 2.11396 2.68788 3.23397 3.32279 3.36805 3.38754 3.49367 3.70336 3.95869 4.23865 4.40452 4.45568 4.47463 4.50036 4.67481 4.71412 4.83669 5.02436 5.13942 5.16523 5.23136 5.28555 5.30889 5.31882 5.32400 5.39054 5.44954 5.46063 5.57894 5.63771 5.67818 5.70432 5.71587 5.75245 5.86119 5.92784 5.93376 6.08178 6.19360 6.23562 6.76086 6.83573 7.12680 7.48372 7.58123 7.94375 8.18344 8.25815 8.45929 8.92739 9.16906 9.57847 11.05907 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.015494 B = 0.002803 C = 0.002509 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1806.676137 B = 9985.524016 C =11155.343112 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.002 3.998 3 C -0.151 4.151 4 C 0.172 3.828 5 N -0.481 5.481 6 C 0.178 3.822 7 C 0.149 3.851 8 H 0.083 0.917 9 C -0.110 4.110 10 C -0.120 4.120 11 C 0.037 3.963 12 N -0.477 5.477 13 C 0.027 3.973 14 C 0.508 3.492 15 O -0.519 6.519 16 N -0.606 5.606 17 C 0.084 3.916 18 C 0.247 3.753 19 C -0.526 4.526 20 H 0.055 0.945 21 C 0.061 3.939 22 N -0.895 5.895 23 Si 0.898 3.102 24 H -0.277 1.277 25 H -0.286 1.286 26 H -0.276 1.276 27 N -0.345 5.345 28 O 0.083 5.917 29 H 0.068 0.932 30 H 0.076 0.924 31 H 0.064 0.936 32 H 0.114 0.886 33 H 0.076 0.924 34 H 0.062 0.938 35 H 0.067 0.933 36 H 0.073 0.927 37 H 0.077 0.923 38 H 0.077 0.923 39 H 0.072 0.928 40 H 0.103 0.897 41 H 0.046 0.954 42 H 0.064 0.936 43 H 0.088 0.912 44 H 0.042 0.958 45 H 0.075 0.925 46 H 0.053 0.947 47 H 0.031 0.969 48 H 0.044 0.956 49 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.069 14.816 20.586 27.289 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.018 4.018 3 C -0.209 4.209 4 C -0.049 4.049 5 N -0.215 5.215 6 C -0.095 4.095 7 C 0.039 3.961 8 H 0.101 0.899 9 C -0.149 4.149 10 C -0.159 4.159 11 C -0.090 4.090 12 N -0.202 5.202 13 C -0.104 4.104 14 C 0.293 3.707 15 O -0.394 6.394 16 N -0.340 5.340 17 C -0.060 4.060 18 C 0.128 3.872 19 C -0.564 4.564 20 H 0.074 0.926 21 C -0.141 4.141 22 N -0.534 5.534 23 Si 0.726 3.274 24 H -0.203 1.203 25 H -0.212 1.212 26 H -0.202 1.202 27 N -0.048 5.048 28 O 0.021 5.979 29 H 0.087 0.913 30 H 0.095 0.905 31 H 0.083 0.917 32 H 0.132 0.868 33 H 0.095 0.905 34 H 0.081 0.919 35 H 0.086 0.914 36 H 0.092 0.908 37 H 0.095 0.905 38 H 0.096 0.904 39 H 0.091 0.909 40 H 0.122 0.878 41 H 0.064 0.936 42 H 0.082 0.918 43 H 0.106 0.894 44 H 0.061 0.939 45 H 0.094 0.906 46 H 0.072 0.928 47 H 0.049 0.951 48 H 0.062 0.938 49 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 9.978 15.080 18.767 26.061 hybrid contribution 0.489 -1.585 0.278 1.682 sum 10.467 13.494 19.045 25.581 Atomic orbital electron populations 1.21925 0.92114 1.03351 1.03663 1.19811 0.97072 0.95737 0.89195 1.21913 1.01822 0.93512 1.03653 1.28788 0.94317 0.92583 0.89175 1.71835 1.16986 1.13624 1.19041 1.25392 1.00150 0.98875 0.85120 1.20791 0.91213 0.90819 0.93286 0.89942 1.22291 0.94256 1.00831 0.97510 1.22302 0.97761 0.97825 0.97969 1.23209 0.89620 0.94821 1.01351 1.64947 1.10282 1.29183 1.15796 1.22247 0.95407 0.95326 0.97436 1.19949 0.81418 0.79806 0.89484 1.90665 1.68688 1.54171 1.25900 1.48146 1.32652 1.42947 1.10236 1.21614 0.99973 0.99762 0.84655 1.19264 0.89089 0.96031 0.82783 1.21383 1.09958 1.12204 1.12899 0.92630 1.24940 0.94963 0.97571 0.96645 1.69928 1.18343 1.40834 1.24268 0.86562 0.79279 0.82694 0.78891 1.20296 1.21152 1.20184 1.74795 1.10641 1.03219 1.16177 1.85355 1.54172 1.43101 1.15292 0.91301 0.90461 0.91721 0.86825 0.90481 0.91908 0.91350 0.90820 0.90466 0.90420 0.90883 0.87826 0.93620 0.91834 0.89405 0.93935 0.90641 0.92837 0.95090 0.93829 0.92661 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.85 9.18 37.16 0.34 -0.51 16 2 C 0.00 0.01 3.39 -91.77 -0.31 -0.30 16 3 C -0.15 -0.72 9.17 37.15 0.34 -0.38 16 4 C 0.17 1.88 7.02 -13.06 -0.09 1.79 16 5 N -0.48 -6.23 11.55 -9.87 -0.11 -6.34 16 6 C 0.18 2.58 6.61 -156.37 -1.03 1.55 16 7 C 0.15 2.01 2.81 -67.23 -0.19 1.82 16 8 H 0.08 1.00 8.00 -51.93 -0.42 0.58 16 9 C -0.11 -1.25 6.54 -25.35 -0.17 -1.41 16 10 C -0.12 -1.39 7.00 -25.35 -0.18 -1.57 16 11 C 0.04 0.56 5.92 -2.18 -0.01 0.54 16 12 N -0.48 -7.84 4.64 -224.94 -1.04 -8.89 16 13 C 0.03 0.46 3.82 -4.97 -0.02 0.44 16 14 C 0.51 11.25 7.52 -10.98 -0.08 11.17 16 15 O -0.52 -13.73 14.80 5.56 0.08 -13.65 16 16 N -0.61 -13.51 2.86 -182.95 -0.52 -14.03 16 17 C 0.08 1.41 10.24 59.84 0.61 2.02 16 18 C 0.25 6.71 5.16 -5.19 -0.03 6.68 16 19 C -0.53 -15.21 9.39 -34.44 -0.32 -15.53 16 20 H 0.06 1.60 7.81 -52.49 -0.41 1.19 16 21 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 22 N -0.89 -27.12 13.29 55.43 0.74 -26.39 16 23 Si 0.90 22.16 29.54 -169.99 -5.02 17.14 16 24 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 25 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 26 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 27 N -0.34 -5.48 12.15 30.90 0.38 -5.10 16 28 O 0.08 1.10 11.31 18.10 0.20 1.30 16 29 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 30 H 0.08 0.27 8.14 -51.93 -0.42 -0.16 16 31 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 32 H 0.11 0.61 8.14 -51.93 -0.42 0.19 16 33 H 0.08 0.22 8.14 -51.93 -0.42 -0.20 16 34 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 35 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 36 H 0.07 0.90 7.85 -51.93 -0.41 0.49 16 37 H 0.08 0.70 8.14 -51.93 -0.42 0.27 16 38 H 0.08 0.93 8.14 -51.93 -0.42 0.50 16 39 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 40 H 0.10 1.87 7.24 -51.93 -0.38 1.49 16 41 H 0.05 0.62 7.75 -51.93 -0.40 0.22 16 42 H 0.06 0.93 7.03 -51.93 -0.36 0.57 16 43 H 0.09 1.41 7.75 -51.93 -0.40 1.01 16 44 H 0.04 0.63 8.14 -51.93 -0.42 0.20 16 45 H 0.07 1.27 8.07 -51.93 -0.42 0.86 16 46 H 0.05 0.74 6.44 -51.93 -0.33 0.40 16 47 H 0.03 0.85 8.07 -51.93 -0.42 0.43 16 48 H 0.04 1.34 7.42 -51.93 -0.39 0.95 16 49 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 LS Contribution 401.97 15.07 6.06 6.06 Total: -1.00 -36.22 401.97 -8.60 -44.83 By element: Atomic # 1 Polarization: 5.21 SS G_CDS: -8.12 Total: -2.91 kcal Atomic # 6 Polarization: 9.22 SS G_CDS: -1.24 Total: 7.98 kcal Atomic # 7 Polarization: -60.18 SS G_CDS: -0.57 Total: -60.75 kcal Atomic # 8 Polarization: -12.63 SS G_CDS: 0.29 Total: -12.35 kcal Atomic # 14 Polarization: 22.16 SS G_CDS: -5.02 Total: 17.14 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -36.22 -8.60 -44.83 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075581735.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.354 kcal (2) G-P(sol) polarization free energy of solvation -36.225 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.129 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.602 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.827 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.528 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds