Wall clock time and date at job start Tue Mar 31 2020 05:32:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53004 * 109.46713 * 2 1 4 4 C 1.50696 * 109.47271 * 120.00480 * 2 1 3 5 5 N 1.31129 * 126.55517 * 120.00779 * 4 2 1 6 6 C 1.34491 * 105.61768 * 179.97438 * 5 4 2 7 7 C 1.50695 * 126.28712 * 179.97438 * 6 5 4 8 8 H 1.08994 * 110.42204 * 347.31435 * 7 6 5 9 9 C 1.54907 * 110.37261 * 109.62656 * 7 6 5 10 10 C 1.55145 * 101.65467 * 155.89699 * 9 7 6 11 11 C 1.54323 * 103.01781 * 324.34796 * 10 9 7 12 12 N 1.47443 * 107.23369 * 22.28203 * 11 10 9 13 13 C 1.46899 * 111.00132 * 123.25702 * 12 11 10 14 14 C 1.50697 * 109.46861 * 69.87054 * 13 12 11 15 15 O 1.21291 * 120.00365 * 0.02562 * 14 13 12 16 16 N 1.34774 * 120.00055 * 179.97438 * 14 13 12 17 17 C 1.46496 * 120.00119 * 0.02562 * 16 14 13 18 18 C 1.46505 * 120.00261 * 180.02562 * 16 14 13 19 19 C 1.50703 * 109.47064 * 270.00227 * 18 16 14 20 20 H 1.07996 * 119.99751 * 359.97438 * 19 18 16 21 21 C 1.37877 * 120.00001 * 180.02562 * 19 18 16 22 22 N 1.31517 * 120.00094 * 359.97438 * 21 19 18 23 23 Si 1.86803 * 119.99955 * 180.02562 * 21 19 18 24 24 H 1.48498 * 109.47171 * 89.99544 * 23 21 19 25 25 H 1.48500 * 109.46632 * 209.99795 * 23 21 19 26 26 H 1.48494 * 109.47053 * 329.99231 * 23 21 19 27 27 N 1.29946 * 107.42261 * 0.23525 * 6 5 4 28 28 O 1.21298 * 110.25179 * 359.58483 * 27 6 5 29 29 H 1.09001 * 109.47048 * 299.99437 * 1 2 3 30 30 H 1.08997 * 109.47543 * 59.99998 * 1 2 3 31 31 H 1.09012 * 109.46886 * 179.97438 * 1 2 3 32 32 H 1.09001 * 109.47048 * 240.00562 * 2 1 3 33 33 H 1.08997 * 109.46819 * 179.97438 * 3 2 1 34 34 H 1.08997 * 109.47117 * 300.00262 * 3 2 1 35 35 H 1.09001 * 109.46904 * 60.00474 * 3 2 1 36 36 H 1.08999 * 110.99111 * 37.81055 * 9 7 6 37 37 H 1.09003 * 111.02349 * 274.00309 * 9 7 6 38 38 H 1.09002 * 110.70863 * 205.96346 * 10 9 7 39 39 H 1.08998 * 110.70382 * 82.72766 * 10 9 7 40 40 H 1.08996 * 109.88825 * 262.87223 * 11 10 9 41 41 H 1.08999 * 109.88565 * 141.68678 * 11 10 9 42 42 H 1.08995 * 109.47159 * 309.87600 * 13 12 11 43 43 H 1.08992 * 109.47329 * 189.87034 * 13 12 11 44 44 H 1.09004 * 109.47335 * 270.00228 * 17 16 14 45 45 H 1.09006 * 109.47349 * 29.99742 * 17 16 14 46 46 H 1.09003 * 109.47665 * 149.99907 * 17 16 14 47 47 H 1.09002 * 109.47068 * 30.00196 * 18 16 14 48 48 H 1.09001 * 109.47372 * 150.00283 * 18 16 14 49 49 H 0.97000 * 120.00333 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0324 -0.7105 1.2304 5 7 2.7894 -1.7808 1.2598 6 6 2.9820 -2.0523 2.5628 7 6 3.7888 -3.1936 3.1263 8 1 4.0238 -3.9156 2.3443 9 6 5.0894 -2.6636 3.7797 10 6 5.4161 -3.7948 4.7900 11 6 4.0203 -4.2490 5.2665 12 7 3.0528 -3.8495 4.2282 13 6 2.2967 -5.0099 3.7387 14 6 1.3612 -5.4913 4.8177 15 8 1.3274 -4.9233 5.8888 16 7 0.5614 -6.5524 4.5921 17 6 0.6018 -7.2381 3.2982 18 6 -0.3484 -7.0200 5.6408 19 6 0.3520 -8.0479 6.4918 20 1 1.3725 -8.3253 6.2730 21 6 -0.3105 -8.6348 7.5490 22 7 -1.5535 -8.2973 7.8151 23 14 0.5578 -9.9083 8.6043 24 1 1.2443 -9.2307 9.7333 25 1 -0.4384 -10.8720 9.1372 26 1 1.5578 -10.6346 7.7811 27 7 2.3400 -1.1530 3.2467 28 8 1.7920 -0.3697 2.5001 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3633 -1.0278 -0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 3.1299 1.4426 0.0005 34 1 1.6765 1.9564 -0.8899 35 1 1.6766 1.9563 0.8900 36 1 4.9111 -1.7197 4.2948 37 1 5.8838 -2.5588 3.0406 38 1 6.0016 -3.4090 5.6245 39 1 5.9399 -4.6132 4.2960 40 1 3.7740 -3.7620 6.2100 41 1 4.0051 -5.3318 5.3906 42 1 2.9887 -5.8095 3.4747 43 1 1.7201 -4.7233 2.8593 44 1 -0.1203 -6.7807 2.6218 45 1 1.6020 -7.1534 2.8730 46 1 0.3539 -8.2905 3.4367 47 1 -0.6494 -6.1772 6.2631 48 1 -1.2309 -7.4674 5.1834 49 1 -2.0197 -8.7105 8.5586 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000075581736.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:32:15 Heat of formation + Delta-G solvation = 41.018880 kcal Electronic energy + Delta-G solvation = -29796.049086 eV Core-core repulsion = 25761.781247 eV Total energy + Delta-G solvation = -4034.267838 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -45.61936 -39.73683 -38.18112 -36.58939 -35.51044 -34.69819 -32.71148 -32.09318 -31.69324 -29.18326 -28.22846 -27.67902 -26.49475 -25.38339 -24.50091 -24.09731 -22.62282 -21.93585 -21.17753 -19.69928 -18.34031 -18.05028 -17.53405 -16.53973 -16.51924 -16.19839 -15.91859 -15.68128 -14.99202 -14.75795 -14.63424 -14.19318 -13.77345 -13.71431 -13.40343 -13.24718 -12.72390 -12.66903 -12.58265 -12.42731 -12.30213 -12.18718 -12.06008 -11.95376 -11.82664 -11.79343 -11.49817 -11.38850 -11.27358 -11.20993 -11.16497 -11.03485 -10.86129 -10.74730 -10.55867 -10.13862 -9.88691 -9.60932 -8.90599 -8.41895 -8.24805 -7.59151 -6.02411 -4.07277 1.14717 2.14440 2.71491 3.25090 3.31609 3.37308 3.38837 3.49940 3.74673 3.98301 4.23598 4.41699 4.44736 4.48012 4.51143 4.60547 4.73028 4.83015 5.05496 5.11678 5.15054 5.23814 5.29832 5.31765 5.32352 5.33789 5.37428 5.45953 5.47443 5.61228 5.64555 5.68825 5.71143 5.74157 5.76531 5.80507 5.94125 5.94418 6.02699 6.20294 6.32403 6.84276 6.95045 7.13860 7.48356 7.58387 7.94222 8.21540 8.25696 8.46306 8.92844 9.17165 9.57737 11.05661 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.015979 B = 0.002729 C = 0.002478 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1751.903321 B =10256.212777 C =11296.977344 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.002 3.998 3 C -0.151 4.151 4 C 0.172 3.828 5 N -0.482 5.482 6 C 0.181 3.819 7 C 0.161 3.839 8 H 0.086 0.914 9 C -0.115 4.115 10 C -0.141 4.141 11 C 0.057 3.943 12 N -0.502 5.502 13 C 0.034 3.966 14 C 0.506 3.494 15 O -0.519 6.519 16 N -0.606 5.606 17 C 0.084 3.916 18 C 0.247 3.753 19 C -0.524 4.524 20 H 0.056 0.944 21 C 0.060 3.940 22 N -0.895 5.895 23 Si 0.898 3.102 24 H -0.279 1.279 25 H -0.286 1.286 26 H -0.275 1.275 27 N -0.347 5.347 28 O 0.081 5.919 29 H 0.068 0.932 30 H 0.076 0.924 31 H 0.064 0.936 32 H 0.114 0.886 33 H 0.062 0.938 34 H 0.076 0.924 35 H 0.067 0.933 36 H 0.080 0.920 37 H 0.080 0.920 38 H 0.081 0.919 39 H 0.070 0.930 40 H 0.090 0.910 41 H 0.061 0.939 42 H 0.063 0.937 43 H 0.090 0.910 44 H 0.043 0.957 45 H 0.053 0.947 46 H 0.074 0.926 47 H 0.043 0.957 48 H 0.031 0.969 49 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.592 15.879 -19.547 27.321 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.018 4.018 3 C -0.209 4.209 4 C -0.049 4.049 5 N -0.216 5.216 6 C -0.093 4.093 7 C 0.050 3.950 8 H 0.104 0.896 9 C -0.154 4.154 10 C -0.180 4.180 11 C -0.070 4.070 12 N -0.226 5.226 13 C -0.098 4.098 14 C 0.291 3.709 15 O -0.394 6.394 16 N -0.340 5.340 17 C -0.060 4.060 18 C 0.128 3.872 19 C -0.563 4.563 20 H 0.074 0.926 21 C -0.142 4.142 22 N -0.534 5.534 23 Si 0.726 3.274 24 H -0.205 1.205 25 H -0.211 1.211 26 H -0.200 1.200 27 N -0.050 5.050 28 O 0.020 5.980 29 H 0.087 0.913 30 H 0.095 0.905 31 H 0.083 0.917 32 H 0.132 0.868 33 H 0.081 0.919 34 H 0.095 0.905 35 H 0.086 0.914 36 H 0.099 0.901 37 H 0.099 0.901 38 H 0.100 0.900 39 H 0.089 0.911 40 H 0.108 0.892 41 H 0.080 0.920 42 H 0.081 0.919 43 H 0.108 0.892 44 H 0.061 0.939 45 H 0.072 0.928 46 H 0.093 0.907 47 H 0.061 0.939 48 H 0.049 0.951 49 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 10.256 16.114 -17.878 26.162 hybrid contribution 0.753 -1.448 0.054 1.633 sum 11.009 14.666 -17.824 25.573 Atomic orbital electron populations 1.21925 0.92142 1.03361 1.03625 1.19804 0.97053 0.95723 0.89233 1.21913 1.01806 0.93531 1.03625 1.28761 0.94465 0.92512 0.89149 1.71826 1.17134 1.13473 1.19121 1.25458 0.99927 0.98844 0.85056 1.20621 0.90151 0.90479 0.93706 0.89582 1.22713 0.94714 0.99643 0.98342 1.22870 0.98049 0.97853 0.99219 1.22772 0.88155 1.00273 0.95808 1.62875 1.25074 1.26005 1.08686 1.22271 0.97214 0.92363 0.97926 1.20021 0.81700 0.80765 0.88439 1.90680 1.67086 1.56013 1.25656 1.48149 1.41012 1.29481 1.15357 1.21620 1.00177 0.98771 0.85452 1.19267 0.87703 0.95371 0.84881 1.21415 0.99355 1.22218 1.13350 0.92596 1.24943 0.94907 0.97147 0.97157 1.69936 1.10498 1.43186 1.29753 0.86503 0.79237 0.81013 0.80684 1.20536 1.21132 1.19994 1.74751 1.10609 1.03391 1.16277 1.85345 1.54439 1.42920 1.15295 0.91314 0.90489 0.91717 0.86843 0.91916 0.90500 0.91375 0.90136 0.90142 0.90049 0.91116 0.89211 0.92015 0.91941 0.89201 0.93886 0.92795 0.90682 0.93853 0.95081 0.92722 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.88 9.18 37.16 0.34 -0.54 16 2 C 0.00 0.01 3.39 -91.77 -0.31 -0.30 16 3 C -0.15 -0.73 9.18 37.16 0.34 -0.39 16 4 C 0.17 1.90 7.02 -13.06 -0.09 1.81 16 5 N -0.48 -6.31 11.55 -9.87 -0.11 -6.43 16 6 C 0.18 2.63 7.12 -156.38 -1.11 1.52 16 7 C 0.16 2.15 2.94 -67.34 -0.20 1.95 16 8 H 0.09 1.03 7.81 -51.93 -0.41 0.62 16 9 C -0.12 -1.28 6.48 -24.59 -0.16 -1.44 16 10 C -0.14 -1.55 6.94 -24.90 -0.17 -1.72 16 11 C 0.06 0.87 5.65 -2.83 -0.02 0.86 16 12 N -0.50 -8.20 4.49 -226.19 -1.02 -9.21 16 13 C 0.03 0.56 3.58 -4.98 -0.02 0.54 16 14 C 0.51 11.11 7.32 -10.99 -0.08 11.03 16 15 O -0.52 -13.71 15.13 5.55 0.08 -13.62 16 16 N -0.61 -13.43 2.86 -182.95 -0.52 -13.95 16 17 C 0.08 1.39 10.24 59.84 0.61 2.00 16 18 C 0.25 6.68 5.16 -5.19 -0.03 6.65 16 19 C -0.52 -15.16 9.39 -34.44 -0.32 -15.48 16 20 H 0.06 1.61 7.81 -52.49 -0.41 1.20 16 21 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 22 N -0.89 -27.12 13.29 55.43 0.74 -26.38 16 23 Si 0.90 22.17 29.54 -169.99 -5.02 17.14 16 24 H -0.28 -6.93 7.11 56.52 0.40 -6.52 16 25 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 26 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 27 N -0.35 -5.51 12.16 30.90 0.38 -5.14 16 28 O 0.08 1.09 11.31 18.10 0.20 1.29 16 29 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 30 H 0.08 0.28 8.14 -51.93 -0.42 -0.15 16 31 H 0.06 0.44 8.14 -51.92 -0.42 0.02 16 32 H 0.11 0.63 8.14 -51.93 -0.42 0.20 16 33 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 34 H 0.08 0.22 8.14 -51.93 -0.42 -0.20 16 35 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 36 H 0.08 0.98 8.05 -51.93 -0.42 0.56 16 37 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 38 H 0.08 0.80 8.14 -51.93 -0.42 0.37 16 39 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 40 H 0.09 1.55 8.14 -51.93 -0.42 1.13 16 41 H 0.06 1.00 7.31 -51.93 -0.38 0.62 16 42 H 0.06 0.89 7.22 -51.93 -0.37 0.52 16 43 H 0.09 1.39 8.04 -51.93 -0.42 0.97 16 44 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 45 H 0.05 0.73 6.44 -51.93 -0.33 0.39 16 46 H 0.07 1.26 8.07 -51.93 -0.42 0.84 16 47 H 0.04 1.33 7.42 -51.93 -0.39 0.94 16 48 H 0.03 0.85 8.07 -51.93 -0.42 0.43 16 49 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 LS Contribution 402.93 15.07 6.07 6.07 Total: -1.00 -36.34 402.93 -8.69 -45.03 By element: Atomic # 1 Polarization: 5.20 SS G_CDS: -8.17 Total: -2.97 kcal Atomic # 6 Polarization: 9.47 SS G_CDS: -1.31 Total: 8.16 kcal Atomic # 7 Polarization: -60.56 SS G_CDS: -0.54 Total: -61.10 kcal Atomic # 8 Polarization: -12.62 SS G_CDS: 0.29 Total: -12.33 kcal Atomic # 14 Polarization: 22.17 SS G_CDS: -5.02 Total: 17.14 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -36.34 -8.69 -45.03 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075581736.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.045 kcal (2) G-P(sol) polarization free energy of solvation -36.340 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.704 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.685 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.026 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.019 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds