Wall clock time and date at job start Tue Mar 31 2020 05:34:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08995 * 109.46185 * 2 1 4 4 C 1.53039 * 109.45680 * 240.02217 * 2 1 3 5 5 C 1.53123 * 109.31189 * 299.15344 * 4 2 1 6 6 H 1.09000 * 109.52057 * 62.27355 * 5 4 2 7 7 N 1.46898 * 109.52408 * 182.46200 * 5 4 2 8 8 C 1.46905 * 110.99958 * 66.04591 * 7 5 4 9 9 C 1.46892 * 111.00056 * 189.99828 * 7 5 4 10 10 C 1.50703 * 109.47255 * 170.00290 * 9 7 5 11 11 O 1.21280 * 119.99848 * 359.97438 * 10 9 7 12 12 N 1.34776 * 120.00076 * 180.02562 * 10 9 7 13 13 C 1.46500 * 119.99785 * 180.02562 * 12 10 9 14 14 C 1.50693 * 109.47562 * 89.99461 * 13 12 10 15 15 H 1.08005 * 119.99990 * 359.97438 * 14 13 12 16 16 C 1.37879 * 120.00163 * 180.02562 * 14 13 12 17 17 N 1.31510 * 119.99984 * 359.97438 * 16 14 13 18 18 Si 1.86799 * 120.00080 * 180.02562 * 16 14 13 19 19 H 1.48501 * 109.47317 * 359.97438 * 18 16 14 20 20 H 1.48498 * 109.47812 * 119.99622 * 18 16 14 21 21 H 1.48504 * 109.46933 * 240.00117 * 18 16 14 22 22 C 1.46499 * 120.00319 * 359.97438 * 12 10 9 23 23 C 1.53001 * 109.46912 * 90.00029 * 22 12 10 24 24 C 1.47198 * 109.46892 * 179.97438 * 23 22 12 25 25 N 8.94128 * 62.77980 * 194.79901 * 2 1 3 26 26 C 1.53129 * 109.15931 * 302.40768 * 5 4 2 27 27 C 1.53036 * 109.30712 * 57.59477 * 26 5 4 28 28 N 1.46842 * 109.45440 * 119.97830 * 2 1 3 29 29 C 1.46910 * 110.99703 * 294.16755 * 28 2 1 30 30 H 1.08996 * 109.47494 * 179.97438 * 1 2 3 31 31 H 1.09003 * 109.46996 * 299.97495 * 1 2 3 32 32 H 1.08996 * 109.47397 * 59.97318 * 1 2 3 33 33 H 1.09002 * 109.50563 * 59.11676 * 4 2 1 34 34 H 1.09003 * 109.50107 * 179.19658 * 4 2 1 35 35 H 1.08999 * 109.46773 * 59.99733 * 8 7 5 36 36 H 1.09000 * 109.47289 * 180.02562 * 8 7 5 37 37 H 1.09002 * 109.46845 * 300.00497 * 8 7 5 38 38 H 1.08999 * 109.47401 * 289.99966 * 9 7 5 39 39 H 1.09004 * 109.47233 * 50.00257 * 9 7 5 40 40 H 1.09003 * 109.47149 * 209.99721 * 13 12 10 41 41 H 1.09003 * 109.47204 * 329.98882 * 13 12 10 42 42 H 0.96996 * 120.00059 * 179.97438 * 17 16 14 43 43 H 1.08996 * 109.47347 * 210.00276 * 22 12 10 44 44 H 1.09004 * 109.46914 * 330.00349 * 22 12 10 45 45 H 1.08996 * 109.47317 * 300.00266 * 23 22 12 46 46 H 1.08997 * 109.46867 * 60.00723 * 23 22 12 47 47 H 1.09000 * 109.46579 * 297.65836 * 26 5 4 48 48 H 1.08997 * 109.53656 * 177.57437 * 26 5 4 49 49 H 1.09001 * 109.45883 * 180.82826 * 27 26 5 50 50 H 1.09002 * 109.45657 * 60.85248 * 27 26 5 51 51 H 1.08993 * 109.46992 * 60.00241 * 29 28 2 52 52 H 1.08996 * 109.47228 * 180.02562 * 29 28 2 53 53 H 1.09000 * 109.46908 * 299.99999 * 29 28 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0398 -0.7210 -1.2500 5 6 1.5447 -2.1699 -1.2361 6 1 0.4553 -2.1829 -1.2681 7 7 2.0799 -2.8828 -2.4037 8 6 3.5407 -3.0124 -2.3173 9 6 1.4428 -4.1977 -2.5552 10 6 1.8292 -4.7929 -3.8847 11 8 2.5627 -4.1816 -4.6326 12 7 1.3588 -6.0040 -4.2431 13 6 1.7349 -6.5828 -5.5353 14 6 2.9919 -7.3982 -5.3738 15 1 3.4638 -7.4770 -4.4055 16 6 3.5402 -8.0427 -6.4624 17 7 2.9659 -7.9463 -7.6416 18 14 5.0979 -9.0540 -6.2621 19 1 5.5423 -9.0034 -4.8460 20 1 4.8266 -10.4626 -6.6461 21 1 6.1637 -8.4995 -7.1349 22 6 0.4724 -6.7422 -3.3400 23 6 -0.9821 -6.3727 -3.6385 24 6 -1.8728 -7.1149 -2.7316 25 7 -2.5598 -7.6873 -2.0309 26 6 2.0264 -2.8533 0.0468 27 6 1.5169 -2.0705 1.2591 28 7 2.0191 -0.6918 1.1993 29 6 1.6650 0.0506 2.4165 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5135 0.8902 32 1 -0.3634 0.5142 -0.8897 33 1 1.6638 -0.2164 -2.1400 34 1 3.1297 -0.7090 -1.2579 35 1 3.8035 -3.5686 -1.4175 36 1 3.9108 -3.5435 -3.1943 37 1 3.9916 -2.0209 -2.2762 38 1 1.7737 -4.8565 -1.7524 39 1 0.3597 -4.0841 -2.5090 40 1 0.9297 -7.2237 -5.8945 41 1 1.9106 -5.7828 -6.2545 42 1 3.3518 -8.3994 -8.4075 43 1 0.6130 -7.8129 -3.4878 44 1 0.7084 -6.4837 -2.3077 45 1 -1.1227 -5.3020 -3.4908 46 1 -1.2180 -6.6312 -4.6707 47 1 3.1161 -2.8753 0.0596 48 1 1.6413 -3.8724 0.0836 49 1 1.8707 -2.5466 2.1736 50 1 0.4269 -2.0606 1.2529 51 1 0.5810 0.1424 2.4836 52 1 2.0394 -0.4834 3.2898 53 1 2.1122 1.0440 2.3792 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000076040366.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:34:50 Heat of formation + Delta-G solvation = -9.476410 kcal Electronic energy + Delta-G solvation = -30514.615736 eV Core-core repulsion = 26613.991352 eV Total energy + Delta-G solvation = -3900.624384 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.227 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.31605 -40.42353 -38.10197 -37.61565 -36.54603 -34.84722 -33.16202 -32.51532 -32.10120 -30.21073 -28.64309 -28.20078 -27.07749 -25.60540 -25.25327 -24.13674 -23.83593 -21.88691 -19.82816 -19.30536 -18.79236 -18.31110 -18.11759 -17.14057 -16.92710 -16.58513 -16.28050 -16.19466 -16.09904 -15.62267 -15.36519 -15.04404 -14.89747 -14.70173 -14.45047 -14.36318 -14.21356 -14.00379 -13.66700 -13.53093 -13.46250 -13.37179 -13.21140 -12.98122 -12.89790 -12.71639 -12.65862 -12.62555 -12.49549 -12.44619 -12.27117 -12.15496 -11.88616 -11.81367 -11.68767 -11.60680 -11.50031 -11.02854 -10.57575 -10.40545 -9.40577 -9.14914 -9.06692 -8.16168 -6.28157 1.39296 1.42110 1.52142 1.71067 1.85454 1.97415 2.25939 2.44869 2.97041 3.06418 3.15089 3.24020 3.79640 3.80828 3.94842 4.03201 4.09966 4.14666 4.17703 4.28821 4.31864 4.39966 4.45480 4.48890 4.55220 4.56858 4.63845 4.67573 4.73041 4.75635 4.83113 4.86270 4.88022 5.03915 5.07551 5.10117 5.10831 5.11509 5.16528 5.18518 5.29225 5.34906 5.38268 5.50836 5.65181 5.91397 6.04629 6.16158 6.20333 6.22914 6.27625 6.62003 6.80285 6.87686 7.37922 7.62668 8.90527 Molecular weight = 336.23amu Principal moments of inertia in cm(-1) A = 0.011965 B = 0.003013 C = 0.002619 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2339.683484 B = 9291.192580 C =10689.327192 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.086 3.914 3 H 0.085 0.915 4 C -0.099 4.099 5 C 0.089 3.911 6 H 0.092 0.908 7 N -0.530 5.530 8 C 0.025 3.975 9 C 0.044 3.956 10 C 0.502 3.498 11 O -0.569 6.569 12 N -0.601 5.601 13 C 0.261 3.739 14 C -0.536 4.536 15 H 0.052 0.948 16 C 0.011 3.989 17 N -0.926 5.926 18 Si 0.956 3.044 19 H -0.268 1.268 20 H -0.274 1.274 21 H -0.285 1.285 22 C 0.114 3.886 23 C -0.038 4.038 24 C 0.246 3.754 25 N -0.489 5.489 26 C -0.149 4.149 27 C 0.060 3.940 28 N -0.551 5.551 29 C 0.023 3.977 30 H 0.061 0.939 31 H 0.060 0.940 32 H 0.066 0.934 33 H 0.071 0.929 34 H 0.059 0.941 35 H 0.034 0.966 36 H 0.051 0.949 37 H 0.071 0.929 38 H 0.078 0.922 39 H 0.130 0.870 40 H 0.033 0.967 41 H 0.003 0.997 42 H 0.265 0.735 43 H 0.082 0.918 44 H 0.104 0.896 45 H 0.137 0.863 46 H 0.119 0.881 47 H 0.064 0.936 48 H 0.073 0.927 49 H 0.076 0.924 50 H 0.045 0.955 51 H 0.033 0.967 52 H 0.069 0.931 53 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.022 14.284 19.279 25.001 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C -0.023 4.023 3 H 0.104 0.896 4 C -0.137 4.137 5 C -0.018 4.018 6 H 0.110 0.890 7 N -0.253 5.253 8 C -0.123 4.123 9 C -0.087 4.087 10 C 0.291 3.709 11 O -0.448 6.448 12 N -0.332 5.332 13 C 0.140 3.860 14 C -0.575 4.575 15 H 0.070 0.930 16 C -0.188 4.188 17 N -0.566 5.566 18 Si 0.782 3.218 19 H -0.192 1.192 20 H -0.199 1.199 21 H -0.212 1.212 22 C -0.010 4.010 23 C -0.079 4.079 24 C -0.071 4.071 25 N -0.167 5.167 26 C -0.189 4.189 27 C -0.068 4.068 28 N -0.275 5.275 29 C -0.125 4.125 30 H 0.080 0.920 31 H 0.079 0.921 32 H 0.085 0.915 33 H 0.089 0.911 34 H 0.078 0.922 35 H 0.052 0.948 36 H 0.070 0.930 37 H 0.089 0.911 38 H 0.095 0.905 39 H 0.147 0.853 40 H 0.051 0.949 41 H 0.021 0.979 42 H 0.074 0.926 43 H 0.101 0.899 44 H 0.122 0.878 45 H 0.154 0.846 46 H 0.137 0.863 47 H 0.082 0.918 48 H 0.092 0.908 49 H 0.094 0.906 50 H 0.063 0.937 51 H 0.052 0.948 52 H 0.088 0.912 53 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -7.238 13.939 19.286 24.872 hybrid contribution 0.657 -1.009 -0.151 1.213 sum -6.581 12.931 19.134 24.013 Atomic orbital electron populations 1.22458 0.96702 1.02480 1.02661 1.21640 0.93384 0.97839 0.89452 0.89640 1.21581 1.00949 0.94161 0.97038 1.21873 0.99671 0.93720 0.86582 0.88976 1.61814 1.05333 1.17688 1.40469 1.22427 0.87988 1.01825 1.00101 1.22093 1.02276 0.91070 0.93223 1.21123 0.80006 0.80664 0.89140 1.90645 1.37551 1.61475 1.55096 1.48095 1.47413 1.17778 1.19941 1.18761 0.94529 0.92152 0.80539 1.21772 1.10877 1.29829 0.94981 0.92960 1.25712 1.00341 0.97908 0.94883 1.70028 1.41571 1.44658 1.00388 0.85534 0.79529 0.78523 0.78221 1.19231 1.19931 1.21165 1.21493 0.86824 0.98188 0.94536 1.19841 0.90160 1.00688 0.97233 1.29145 0.92878 0.92370 0.92713 1.81254 1.11884 1.11294 1.12282 1.22277 1.01948 0.99382 0.95250 1.22003 0.97884 0.88670 0.98249 1.62144 1.60025 1.02538 1.02831 1.22393 0.99199 0.99007 0.91866 0.92049 0.92118 0.91474 0.91074 0.92205 0.94779 0.93037 0.91053 0.90471 0.85256 0.94917 0.97909 0.92637 0.89943 0.87821 0.84557 0.86254 0.91756 0.90821 0.90600 0.93695 0.94815 0.91174 0.91077 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.26 8.18 71.98 0.59 -1.67 16 2 C 0.09 1.25 2.93 44.94 0.13 1.38 16 3 H 0.09 1.21 8.12 -2.39 -0.02 1.19 16 4 C -0.10 -1.80 4.87 30.65 0.15 -1.65 16 5 C 0.09 1.64 1.95 45.00 0.09 1.72 16 6 H 0.09 1.48 6.35 -2.39 -0.02 1.47 16 7 N -0.53 -13.37 4.45 -901.11 -4.01 -17.38 16 8 C 0.02 0.69 8.42 127.69 1.07 1.77 16 9 C 0.04 1.04 3.58 85.56 0.31 1.35 16 10 C 0.50 18.02 7.36 87.66 0.65 18.66 16 11 O -0.57 -26.85 13.91 -3.03 -0.04 -26.89 16 12 N -0.60 -21.28 2.46 -826.16 -2.03 -23.31 16 13 C 0.26 12.59 5.16 85.63 0.44 13.03 16 14 C -0.54 -28.87 9.39 25.60 0.24 -28.63 16 15 H 0.05 2.81 7.81 -2.91 -0.02 2.78 16 16 C 0.01 0.58 5.46 84.66 0.46 1.04 16 17 N -0.93 -53.90 13.29 21.45 0.28 -53.61 16 18 Si 0.96 43.77 29.54 68.60 2.03 45.80 16 19 H -0.27 -11.89 7.11 99.48 0.71 -11.19 16 20 H -0.27 -12.01 7.11 99.48 0.71 -11.31 16 21 H -0.29 -13.12 7.11 99.48 0.71 -12.41 16 22 C 0.11 2.73 5.17 86.38 0.45 3.17 16 23 C -0.04 -0.67 6.03 28.79 0.17 -0.50 16 24 C 0.25 5.17 15.43 89.44 1.38 6.55 16 25 N -0.49 -13.18 18.54 20.01 0.37 -12.81 16 26 C -0.15 -2.47 4.65 30.65 0.14 -2.33 16 27 C 0.06 0.86 5.17 86.32 0.45 1.31 16 28 N -0.55 -8.34 4.86 -897.16 -4.36 -12.69 16 29 C 0.02 0.27 9.32 127.69 1.19 1.46 16 30 H 0.06 0.77 4.80 -2.39 -0.01 0.76 16 31 H 0.06 0.67 6.54 -2.39 -0.02 0.66 16 32 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 33 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 34 H 0.06 1.26 6.45 -2.39 -0.02 1.24 16 35 H 0.03 0.86 6.16 -2.39 -0.01 0.85 16 36 H 0.05 1.90 5.83 -2.39 -0.01 1.89 16 37 H 0.07 1.89 6.43 -2.39 -0.02 1.87 16 38 H 0.08 1.58 6.39 -2.39 -0.02 1.57 16 39 H 0.13 2.14 6.97 -2.38 -0.02 2.13 16 40 H 0.03 1.56 8.07 -2.39 -0.02 1.55 16 41 H 0.00 0.16 7.42 -2.39 -0.02 0.14 16 42 H 0.26 14.57 8.31 -92.71 -0.77 13.80 16 43 H 0.08 2.19 8.07 -2.39 -0.02 2.17 16 44 H 0.10 1.86 6.44 -2.38 -0.02 1.85 16 45 H 0.14 1.67 7.22 -2.39 -0.02 1.65 16 46 H 0.12 2.19 8.14 -2.39 -0.02 2.17 16 47 H 0.06 1.28 6.19 -2.39 -0.01 1.26 16 48 H 0.07 1.11 7.05 -2.39 -0.02 1.09 16 49 H 0.08 1.02 8.09 -2.39 -0.02 1.01 16 50 H 0.04 0.59 6.19 -2.39 -0.01 0.57 16 51 H 0.03 0.35 6.46 -2.39 -0.02 0.34 16 52 H 0.07 0.75 8.09 -2.39 -0.02 0.73 16 53 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 Total: -1.00 -72.60 403.46 1.06 -71.54 By element: Atomic # 1 Polarization: 11.77 SS G_CDS: 0.91 Total: 12.68 kcal Atomic # 6 Polarization: 8.78 SS G_CDS: 7.91 Total: 16.69 kcal Atomic # 7 Polarization: -110.06 SS G_CDS: -9.74 Total: -119.81 kcal Atomic # 8 Polarization: -26.85 SS G_CDS: -0.04 Total: -26.89 kcal Atomic # 14 Polarization: 43.77 SS G_CDS: 2.03 Total: 45.80 kcal Total: -72.60 1.06 -71.54 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000076040366.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.064 kcal (2) G-P(sol) polarization free energy of solvation -72.597 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.533 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.057 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.541 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.476 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds