Wall clock time and date at job start Tue Mar 31 2020 06:01:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38252 * 120.00288 * 2 1 4 4 C 1.38217 * 120.00214 * 179.97438 * 3 2 1 5 5 C 1.38259 * 119.99934 * 359.79547 * 4 3 2 6 6 C 1.38217 * 119.99751 * 0.47890 * 5 4 3 7 7 C 1.50699 * 119.99881 * 179.76935 * 6 5 4 8 8 H 1.09001 * 110.00054 * 218.63296 * 7 6 5 9 9 C 1.54333 * 109.99205 * 97.59407 * 7 6 5 10 10 C 1.55153 * 103.02084 * 218.66614 * 9 7 6 11 11 C 1.54907 * 101.58319 * 35.30841 * 10 9 7 12 12 N 1.47022 * 109.88237 * 339.72858 * 7 6 5 13 13 S 1.65600 * 125.64811 * 298.39431 * 12 7 6 14 14 O 1.42099 * 104.27906 * 153.64443 * 13 12 7 15 15 O 1.42101 * 104.27759 * 25.78680 * 13 12 7 16 16 C 1.81396 * 104.45054 * 269.71664 * 13 12 7 17 17 C 1.52996 * 109.47320 * 179.97438 * 16 13 12 18 18 C 1.50702 * 109.47159 * 179.97438 * 17 16 13 19 19 H 1.08002 * 120.00299 * 0.02562 * 18 17 16 20 20 C 1.37884 * 119.99942 * 179.72211 * 18 17 16 21 21 N 1.31514 * 119.99698 * 0.28408 * 20 18 17 22 22 Si 1.86794 * 119.99837 * 180.27476 * 20 18 17 23 23 H 1.48501 * 109.47188 * 90.00793 * 22 20 18 24 24 H 1.48501 * 109.47085 * 210.00372 * 22 20 18 25 25 H 1.48498 * 109.47634 * 330.00608 * 22 20 18 26 26 C 1.38215 * 119.99783 * 180.02562 * 2 1 3 27 27 C 1.50697 * 120.00133 * 359.97369 * 26 2 1 28 28 H 1.08993 * 109.47361 * 269.97859 * 1 2 3 29 29 H 1.09004 * 109.46771 * 29.98206 * 1 2 3 30 30 H 1.09003 * 109.47351 * 149.97824 * 1 2 3 31 31 H 1.07999 * 120.00217 * 359.97438 * 3 2 1 32 32 H 1.07999 * 120.00074 * 180.02562 * 4 3 2 33 33 H 1.07996 * 119.99892 * 180.25175 * 5 4 3 34 34 H 1.09001 * 110.84818 * 100.19725 * 9 7 6 35 35 H 1.09001 * 110.66941 * 337.05039 * 9 7 6 36 36 H 1.09001 * 111.00441 * 277.23352 * 10 9 7 37 37 H 1.09005 * 111.03775 * 153.39832 * 10 9 7 38 38 H 1.09000 * 110.36319 * 204.15774 * 11 10 9 39 39 H 1.08998 * 110.36735 * 81.82842 * 11 10 9 40 40 H 1.09004 * 109.46947 * 59.99849 * 16 13 12 41 41 H 1.09000 * 109.47486 * 300.00277 * 16 13 12 42 42 H 1.09004 * 109.47066 * 60.00127 * 17 16 13 43 43 H 1.08994 * 109.47405 * 299.99958 * 17 16 13 44 44 H 0.97005 * 119.99651 * 179.97438 * 21 20 18 45 45 H 1.08991 * 109.47557 * 270.02520 * 27 26 2 46 46 H 1.08997 * 109.47138 * 30.03124 * 27 26 2 47 47 H 1.09007 * 109.47240 * 150.02256 * 27 26 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5804 1.1972 0.0005 5 6 4.2717 -0.0001 0.0053 6 6 3.5806 -1.1971 -0.0004 7 6 4.3340 -2.5022 -0.0004 8 1 3.8302 -3.2236 -0.6437 9 6 4.4259 -3.0584 1.4363 10 6 5.8593 -3.6496 1.4912 11 6 6.6434 -2.6468 0.6085 12 7 5.7092 -2.2856 -0.4732 13 16 6.1376 -1.7224 -1.9704 14 8 7.4017 -1.1069 -1.7649 15 8 5.0134 -0.9635 -2.3942 16 6 6.3145 -3.2172 -2.9827 17 6 6.7127 -2.8246 -4.4068 18 6 6.8603 -4.0665 -5.2477 19 1 6.6870 -5.0386 -4.8102 20 6 7.2105 -3.9614 -6.5771 21 7 7.4212 -2.7776 -7.1099 22 14 7.3860 -5.5003 -7.6212 23 1 6.0794 -5.8249 -8.2479 24 1 8.3989 -5.2662 -8.6816 25 1 7.8190 -6.6332 -6.7644 26 6 2.1980 -1.1970 -0.0005 27 6 1.4445 -2.5021 -0.0005 28 1 -0.3634 -0.0004 1.0276 29 1 -0.3633 0.8902 -0.5136 30 1 -0.3634 -0.8898 -0.5142 31 1 1.6584 2.1326 -0.0004 32 1 4.1205 2.1325 0.0010 33 1 5.3517 -0.0001 0.0099 34 1 3.6810 -3.8373 1.5991 35 1 4.3106 -2.2578 2.1669 36 1 5.8856 -4.6513 1.0622 37 1 6.2420 -3.6539 2.5119 38 1 7.5351 -3.1200 0.1973 39 1 6.9141 -1.7634 1.1868 40 1 5.3664 -3.7546 -3.0060 41 1 7.0847 -3.8579 -2.5533 42 1 7.6607 -2.2870 -4.3839 43 1 5.9422 -2.1843 -4.8361 44 1 7.6679 -2.7036 -8.0452 45 1 1.2628 -2.8168 1.0270 46 1 0.4921 -2.3718 -0.5144 47 1 2.0335 -3.2618 -0.5144 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000076062381.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:01:27 Heat of formation + Delta-G solvation = -54.607712 kcal Electronic energy + Delta-G solvation = -28206.377639 eV Core-core repulsion = 24480.704578 eV Total energy + Delta-G solvation = -3725.673061 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 337.150 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.17307 -38.02233 -36.55462 -35.39825 -33.89330 -33.31933 -32.67363 -31.15160 -30.95248 -28.68993 -27.16756 -26.25008 -25.58496 -23.14616 -21.76804 -21.42751 -20.77095 -20.44444 -18.33809 -17.52335 -16.93356 -16.39930 -15.95023 -15.41706 -15.22019 -15.08753 -14.58511 -14.52481 -14.26612 -13.79986 -13.57454 -13.35507 -13.24424 -12.94703 -12.85727 -12.71370 -12.50725 -12.47033 -12.10346 -11.85645 -11.74672 -11.58009 -11.50017 -11.48365 -11.28224 -11.20305 -11.08419 -11.02900 -10.95062 -10.75585 -10.65699 -10.40570 -10.37082 -9.76301 -9.33972 -8.83598 -8.50366 -8.40740 -8.33099 -6.12288 -4.17975 0.75314 1.49541 1.54204 3.06048 3.25883 3.31957 3.34785 3.83764 4.28315 4.30835 4.38259 4.50363 4.61573 4.84054 4.86474 4.92732 4.97386 5.08400 5.10384 5.22728 5.26945 5.35573 5.40403 5.44963 5.54286 5.56978 5.63056 5.66887 5.68447 5.72026 5.73734 5.75684 5.79401 5.81051 5.92482 6.05747 6.13157 6.20283 6.31559 6.47184 6.49144 6.65660 6.69133 6.83129 7.17336 7.29816 7.36073 7.80493 8.17637 8.85257 9.46660 10.98796 Molecular weight = 337.15amu Principal moments of inertia in cm(-1) A = 0.013570 B = 0.003527 C = 0.003307 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2062.903564 B = 7937.955041 C = 8463.979150 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.092 4.092 3 C -0.119 4.119 4 C -0.118 4.118 5 C -0.086 4.086 6 C -0.082 4.082 7 C 0.192 3.808 8 H 0.086 0.914 9 C -0.117 4.117 10 C -0.131 4.131 11 C 0.121 3.879 12 N -1.014 6.014 13 S 2.597 3.403 14 O -0.963 6.963 15 O -0.946 6.946 16 C -0.591 4.591 17 C 0.029 3.971 18 C -0.520 4.520 19 H 0.061 0.939 20 C 0.058 3.942 21 N -0.890 5.890 22 Si 0.900 3.100 23 H -0.278 1.278 24 H -0.284 1.284 25 H -0.273 1.273 26 C -0.078 4.078 27 C -0.121 4.121 28 H 0.066 0.934 29 H 0.062 0.938 30 H 0.069 0.931 31 H 0.117 0.883 32 H 0.118 0.882 33 H 0.110 0.890 34 H 0.081 0.919 35 H 0.077 0.923 36 H 0.078 0.922 37 H 0.081 0.919 38 H 0.077 0.923 39 H 0.067 0.933 40 H 0.118 0.882 41 H 0.117 0.883 42 H 0.032 0.968 43 H 0.033 0.967 44 H 0.265 0.735 45 H 0.069 0.931 46 H 0.070 0.930 47 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.749 0.790 20.750 23.383 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.092 4.092 3 C -0.137 4.137 4 C -0.136 4.136 5 C -0.105 4.105 6 C -0.084 4.084 7 C 0.085 3.915 8 H 0.103 0.897 9 C -0.155 4.155 10 C -0.170 4.170 11 C -0.004 4.004 12 N -0.850 5.850 13 S 2.697 3.303 14 O -0.954 6.954 15 O -0.936 6.936 16 C -0.724 4.724 17 C -0.010 4.010 18 C -0.560 4.560 19 H 0.079 0.921 20 C -0.145 4.145 21 N -0.528 5.528 22 Si 0.727 3.273 23 H -0.204 1.204 24 H -0.210 1.210 25 H -0.197 1.197 26 C -0.079 4.079 27 C -0.177 4.177 28 H 0.084 0.916 29 H 0.081 0.919 30 H 0.088 0.912 31 H 0.135 0.865 32 H 0.136 0.864 33 H 0.128 0.872 34 H 0.100 0.900 35 H 0.095 0.905 36 H 0.096 0.904 37 H 0.100 0.900 38 H 0.095 0.905 39 H 0.085 0.915 40 H 0.136 0.864 41 H 0.136 0.864 42 H 0.050 0.950 43 H 0.051 0.949 44 H 0.075 0.925 45 H 0.088 0.912 46 H 0.088 0.912 47 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -10.544 1.848 20.302 22.952 hybrid contribution 0.257 -1.306 -0.884 1.598 sum -10.288 0.542 19.418 21.982 Atomic orbital electron populations 1.20811 0.91556 1.02751 1.01858 1.19619 0.95630 0.92625 1.01299 1.20911 0.94142 0.97188 1.01455 1.21014 0.94296 0.97794 1.00540 1.20753 0.99300 0.92063 0.98334 1.19818 0.93042 0.94894 1.00613 1.20165 0.81440 0.93488 0.96363 0.89675 1.22644 0.97524 1.00501 0.94874 1.22813 0.94924 0.99067 1.00193 1.21938 0.92211 0.97872 0.88429 1.59055 1.12400 1.84064 1.29443 1.05614 0.74093 0.77802 0.72815 1.93541 1.43541 1.74114 1.84197 1.93610 1.51766 1.67472 1.80786 1.30498 1.09981 1.18597 1.13300 1.18953 0.97720 0.98858 0.85483 1.21000 1.48143 0.92155 0.94665 0.92063 1.25073 0.95037 0.96401 0.97964 1.69960 1.46501 1.22706 1.13656 0.86468 0.78018 0.82820 0.79977 1.20439 1.20966 1.19741 1.19376 0.92518 0.94902 1.01059 1.20922 1.00248 0.94470 1.02037 0.91559 0.91853 0.91238 0.86498 0.86391 0.87239 0.90043 0.90452 0.90367 0.90045 0.90496 0.91491 0.86381 0.86436 0.94974 0.94854 0.92519 0.91226 0.91162 0.91356 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.04 9.60 36.00 0.35 -0.69 16 2 C -0.09 -1.14 5.88 -104.63 -0.62 -1.75 16 3 C -0.12 -1.53 9.70 -39.58 -0.38 -1.92 16 4 C -0.12 -1.70 10.05 -39.58 -0.40 -2.09 16 5 C -0.09 -1.34 7.39 -39.58 -0.29 -1.63 16 6 C -0.08 -1.17 3.98 -104.62 -0.42 -1.59 16 7 C 0.19 2.39 2.68 -68.10 -0.18 2.21 16 8 H 0.09 1.00 6.39 -51.93 -0.33 0.67 16 9 C -0.12 -1.03 6.41 -24.89 -0.16 -1.19 16 10 C -0.13 -1.08 7.09 -24.59 -0.17 -1.26 16 11 C 0.12 1.37 6.89 -2.53 -0.02 1.36 16 12 N -1.01 -14.48 2.32 -105.63 -0.24 -14.72 16 13 S 2.60 49.30 4.87 -107.50 -0.52 48.78 16 14 O -0.96 -20.74 17.60 -57.54 -1.01 -21.76 16 15 O -0.95 -20.22 14.86 -57.54 -0.85 -21.08 16 16 C -0.59 -11.82 6.11 37.16 0.23 -11.59 16 17 C 0.03 0.76 4.98 -27.88 -0.14 0.62 16 18 C -0.52 -14.61 9.11 -34.44 -0.31 -14.93 16 19 H 0.06 1.63 7.74 -52.49 -0.41 1.22 16 20 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 21 N -0.89 -26.79 13.29 55.43 0.74 -26.05 16 22 Si 0.90 21.36 29.54 -169.99 -5.02 16.34 16 23 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 24 H -0.28 -6.67 7.11 56.52 0.40 -6.26 16 25 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 26 C -0.08 -1.00 5.88 -104.62 -0.62 -1.62 16 27 C -0.12 -1.16 9.14 36.00 0.33 -0.83 16 28 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 29 H 0.06 0.54 8.09 -51.93 -0.42 0.12 16 30 H 0.07 0.59 5.95 -51.93 -0.31 0.28 16 31 H 0.12 1.22 8.06 -52.49 -0.42 0.80 16 32 H 0.12 1.47 8.06 -52.49 -0.42 1.05 16 33 H 0.11 1.77 6.65 -52.49 -0.35 1.42 16 34 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 35 H 0.08 0.69 7.84 -51.93 -0.41 0.28 16 36 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 37 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 38 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 39 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 40 H 0.12 2.14 8.14 -51.92 -0.42 1.72 16 41 H 0.12 2.12 8.14 -51.92 -0.42 1.70 16 42 H 0.03 0.89 8.14 -51.93 -0.42 0.47 16 43 H 0.03 0.92 8.14 -51.93 -0.42 0.50 16 44 H 0.27 7.46 8.31 -40.82 -0.34 7.12 16 45 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 46 H 0.07 0.61 5.95 -51.93 -0.31 0.31 16 47 H 0.07 0.65 6.12 -51.92 -0.32 0.33 16 LS Contribution 382.85 15.07 5.77 5.77 Total: -1.00 -35.46 382.85 -11.53 -46.99 By element: Atomic # 1 Polarization: 8.56 SS G_CDS: -7.48 Total: 1.08 kcal Atomic # 6 Polarization: -32.45 SS G_CDS: -2.90 Total: -35.36 kcal Atomic # 7 Polarization: -41.26 SS G_CDS: 0.49 Total: -40.77 kcal Atomic # 8 Polarization: -40.96 SS G_CDS: -1.87 Total: -42.83 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.02 Total: 16.34 kcal Atomic # 16 Polarization: 49.30 SS G_CDS: -0.52 Total: 48.78 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -35.46 -11.53 -46.99 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000076062381.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.616 kcal (2) G-P(sol) polarization free energy of solvation -35.458 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.074 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.534 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.992 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.608 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds