Wall clock time and date at job start Tue Mar 31 2020 06:01:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38261 * 120.00077 * 2 1 4 4 C 1.38204 * 120.00515 * 179.97438 * 3 2 1 5 5 C 1.38253 * 119.99863 * 0.07163 * 4 3 2 6 6 C 1.38220 * 120.00046 * 359.92364 * 5 4 3 7 7 C 1.50702 * 120.00039 * 180.32307 * 6 5 4 8 8 H 1.09000 * 109.86915 * 145.73817 * 7 6 5 9 9 C 1.54316 * 109.88354 * 266.92144 * 7 6 5 10 10 C 1.55158 * 102.94386 * 141.61090 * 9 7 6 11 11 C 1.54910 * 101.57907 * 324.49589 * 10 9 7 12 12 N 1.47030 * 109.88191 * 24.72971 * 7 6 5 13 13 S 1.65600 * 125.64671 * 61.67464 * 12 7 6 14 14 O 1.42100 * 104.27394 * 206.07375 * 13 12 7 15 15 O 1.42098 * 104.27707 * 333.92757 * 13 12 7 16 16 C 1.81399 * 104.44983 * 90.00223 * 13 12 7 17 17 C 1.52996 * 109.47139 * 179.97438 * 16 13 12 18 18 C 1.50704 * 109.47278 * 179.97438 * 17 16 13 19 19 H 1.07997 * 119.99575 * 359.97438 * 18 17 16 20 20 C 1.37871 * 119.99824 * 179.97438 * 18 17 16 21 21 N 1.31520 * 120.00624 * 0.02562 * 20 18 17 22 22 Si 1.86804 * 119.99745 * 179.97438 * 20 18 17 23 23 H 1.48505 * 109.46907 * 0.02562 * 22 20 18 24 24 H 1.48495 * 109.47210 * 120.00046 * 22 20 18 25 25 H 1.48503 * 109.47227 * 240.00134 * 22 20 18 26 26 C 1.38208 * 120.00389 * 180.02562 * 2 1 3 27 27 C 1.50701 * 119.99804 * 359.97438 * 26 2 1 28 28 H 1.09001 * 109.47242 * 269.97346 * 1 2 3 29 29 H 1.08999 * 109.47144 * 29.97993 * 1 2 3 30 30 H 1.09000 * 109.47061 * 149.97937 * 1 2 3 31 31 H 1.08004 * 119.99258 * 0.02562 * 3 2 1 32 32 H 1.08005 * 120.00190 * 179.97438 * 4 3 2 33 33 H 1.08002 * 120.00347 * 179.97438 * 5 4 3 34 34 H 1.09001 * 110.71843 * 259.97329 * 9 7 6 35 35 H 1.08996 * 110.72295 * 23.24507 * 9 7 6 36 36 H 1.08996 * 111.00648 * 206.42140 * 10 9 7 37 37 H 1.09008 * 111.03705 * 82.58208 * 10 9 7 38 38 H 1.09001 * 110.36629 * 278.16610 * 11 10 9 39 39 H 1.09001 * 110.45970 * 155.89245 * 11 10 9 40 40 H 1.09003 * 109.46957 * 299.99421 * 16 13 12 41 41 H 1.08994 * 109.47206 * 59.99568 * 16 13 12 42 42 H 1.09008 * 109.47421 * 300.00092 * 17 16 13 43 43 H 1.09000 * 109.47284 * 59.99339 * 17 16 13 44 44 H 0.96997 * 120.00071 * 180.02562 * 21 20 18 45 45 H 1.08999 * 109.46988 * 270.01842 * 27 26 2 46 46 H 1.08990 * 109.47415 * 30.02092 * 27 26 2 47 47 H 1.09006 * 109.46768 * 150.01991 * 27 26 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1974 0.0000 4 6 3.5803 1.1975 0.0005 5 6 4.2717 0.0002 -0.0004 6 6 3.5806 -1.1969 -0.0003 7 6 4.3342 -2.5019 0.0060 8 1 3.7834 -3.2450 0.5827 9 6 4.5351 -2.9990 -1.4411 10 6 5.9670 -3.5956 -1.4079 11 6 6.6833 -2.6309 -0.4301 12 7 5.6694 -2.3055 0.5894 13 16 5.9824 -1.8029 2.1360 14 8 7.2601 -1.1867 2.0522 15 8 4.8308 -1.0549 2.5012 16 6 6.0774 -3.3367 3.0999 17 6 6.3668 -3.0016 4.5643 18 6 6.4451 -4.2757 5.3653 19 1 6.3022 -5.2291 4.8785 20 6 6.6991 -4.2242 6.7194 21 7 6.8726 -3.0632 7.3124 22 14 6.7954 -5.8036 7.7124 23 1 6.5654 -6.9659 6.8171 24 1 8.1393 -5.9164 8.3338 25 1 5.7586 -5.7841 8.7753 26 6 2.1981 -1.1969 -0.0005 27 6 1.4446 -2.5020 -0.0005 28 1 -0.3634 -0.0005 1.0277 29 1 -0.3633 0.8902 -0.5135 30 1 -0.3633 -0.8898 -0.5142 31 1 1.6582 2.1327 0.0004 32 1 4.1203 2.1329 0.0001 33 1 5.3517 0.0002 -0.0004 34 1 3.8030 -3.7671 -1.6901 35 1 4.4794 -2.1689 -2.1452 36 1 6.4268 -3.5631 -2.3957 37 1 5.9581 -4.6130 -1.0167 38 1 7.0000 -1.7279 -0.9520 39 1 7.5403 -3.1223 0.0305 40 1 5.1291 -3.8694 3.0293 41 1 6.8769 -3.9643 2.7062 42 1 7.3153 -2.4689 4.6347 43 1 5.5676 -2.3737 4.9582 44 1 7.0516 -3.0270 8.2650 45 1 1.2631 -2.8167 1.0271 46 1 0.4922 -2.3717 -0.5142 47 1 2.0338 -3.2616 -0.5145 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000076062385.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:01:30 Heat of formation + Delta-G solvation = -56.380114 kcal Electronic energy + Delta-G solvation = -28213.447317 eV Core-core repulsion = 24487.697400 eV Total energy + Delta-G solvation = -3725.749918 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 337.150 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.16772 -38.02462 -36.54540 -35.38204 -33.89192 -33.31305 -32.66862 -31.15063 -30.95286 -28.69159 -27.16518 -26.24737 -25.58731 -23.12601 -21.76466 -21.41344 -20.79360 -20.44720 -18.32545 -17.50587 -16.91848 -16.40124 -15.93344 -15.43166 -15.23399 -15.05351 -14.58185 -14.50166 -14.25120 -13.80338 -13.57324 -13.33096 -13.24220 -12.86222 -12.83809 -12.77439 -12.52405 -12.46545 -12.19297 -11.85541 -11.74360 -11.58298 -11.49362 -11.46929 -11.23694 -11.20727 -11.09645 -11.01959 -10.94574 -10.75781 -10.67631 -10.38951 -10.37836 -9.76681 -9.33085 -8.83775 -8.50837 -8.38645 -8.34164 -6.12473 -4.18145 0.75793 1.49420 1.54430 3.06767 3.24946 3.32053 3.35559 3.83458 4.28207 4.31234 4.38527 4.51247 4.61583 4.82994 4.87646 4.92903 4.98911 5.08794 5.16020 5.22058 5.22767 5.34694 5.40575 5.45890 5.52983 5.59272 5.64882 5.67693 5.69304 5.71631 5.73983 5.76703 5.79901 5.85268 5.88173 6.05601 6.12735 6.20829 6.33069 6.47436 6.49285 6.65369 6.69488 6.82645 7.17715 7.29917 7.35985 7.80563 8.17541 8.85412 9.46638 10.98632 Molecular weight = 337.15amu Principal moments of inertia in cm(-1) A = 0.013377 B = 0.003565 C = 0.003324 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2092.622055 B = 7851.637302 C = 8421.323481 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.091 4.091 3 C -0.119 4.119 4 C -0.119 4.119 5 C -0.091 4.091 6 C -0.081 4.081 7 C 0.192 3.808 8 H 0.084 0.916 9 C -0.117 4.117 10 C -0.131 4.131 11 C 0.121 3.879 12 N -1.014 6.014 13 S 2.598 3.402 14 O -0.963 6.963 15 O -0.946 6.946 16 C -0.591 4.591 17 C 0.029 3.971 18 C -0.519 4.519 19 H 0.062 0.938 20 C 0.058 3.942 21 N -0.890 5.890 22 Si 0.899 3.101 23 H -0.272 1.272 24 H -0.282 1.282 25 H -0.282 1.282 26 C -0.076 4.076 27 C -0.123 4.123 28 H 0.069 0.931 29 H 0.061 0.939 30 H 0.068 0.932 31 H 0.117 0.883 32 H 0.118 0.882 33 H 0.112 0.888 34 H 0.081 0.919 35 H 0.078 0.922 36 H 0.081 0.919 37 H 0.078 0.922 38 H 0.067 0.933 39 H 0.077 0.923 40 H 0.118 0.882 41 H 0.117 0.883 42 H 0.032 0.968 43 H 0.033 0.967 44 H 0.264 0.736 45 H 0.073 0.927 46 H 0.069 0.931 47 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.176 1.606 -21.276 23.226 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.091 4.091 3 C -0.137 4.137 4 C -0.137 4.137 5 C -0.110 4.110 6 C -0.083 4.083 7 C 0.086 3.914 8 H 0.102 0.898 9 C -0.156 4.156 10 C -0.170 4.170 11 C -0.005 4.005 12 N -0.849 5.849 13 S 2.697 3.303 14 O -0.954 6.954 15 O -0.936 6.936 16 C -0.724 4.724 17 C -0.011 4.011 18 C -0.559 4.559 19 H 0.080 0.920 20 C -0.145 4.145 21 N -0.528 5.528 22 Si 0.727 3.273 23 H -0.196 1.196 24 H -0.208 1.208 25 H -0.208 1.208 26 C -0.077 4.077 27 C -0.179 4.179 28 H 0.088 0.912 29 H 0.080 0.920 30 H 0.086 0.914 31 H 0.135 0.865 32 H 0.136 0.864 33 H 0.130 0.870 34 H 0.100 0.900 35 H 0.096 0.904 36 H 0.100 0.900 37 H 0.096 0.904 38 H 0.085 0.915 39 H 0.095 0.905 40 H 0.136 0.864 41 H 0.136 0.864 42 H 0.050 0.950 43 H 0.051 0.949 44 H 0.074 0.926 45 H 0.092 0.908 46 H 0.088 0.912 47 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -9.010 2.644 -20.778 22.801 hybrid contribution 0.204 -1.333 0.864 1.601 sum -8.805 1.312 -19.914 21.813 Atomic orbital electron populations 1.20819 0.91558 1.02351 1.02301 1.19622 0.95641 0.92630 1.01177 1.20909 0.94160 0.97178 1.01452 1.21010 0.94308 0.97773 1.00577 1.20783 0.99423 0.92052 0.98720 1.19840 0.93012 0.94904 1.00497 1.20149 0.82546 0.93681 0.95073 0.89777 1.22660 0.97386 1.00799 0.94781 1.22814 0.95224 0.99292 0.99654 1.21939 0.90834 0.98328 0.89364 1.59061 1.12023 1.85464 1.28339 1.05592 0.74188 0.78018 0.72478 1.93540 1.42595 1.74160 1.85104 1.93602 1.50272 1.68058 1.81691 1.30502 1.09893 1.19006 1.13001 1.18959 0.98223 0.99190 0.84679 1.21036 1.49852 0.92031 0.92950 0.92006 1.25072 0.94966 0.96569 0.97879 1.69969 1.47899 1.24045 1.10923 0.86420 0.77826 0.83056 0.80031 1.19627 1.20762 1.20759 1.19390 0.92563 0.94902 1.00838 1.20937 0.99903 0.94311 1.02727 0.91235 0.91974 0.91362 0.86507 0.86413 0.87017 0.90047 0.90363 0.90038 0.90357 0.91504 0.90501 0.86383 0.86449 0.94970 0.94862 0.92575 0.90807 0.91222 0.91529 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.06 9.60 36.00 0.35 -0.71 16 2 C -0.09 -1.14 5.88 -104.63 -0.62 -1.75 16 3 C -0.12 -1.54 9.70 -39.58 -0.38 -1.92 16 4 C -0.12 -1.68 10.05 -39.59 -0.40 -2.08 16 5 C -0.09 -1.40 7.63 -39.58 -0.30 -1.71 16 6 C -0.08 -1.15 3.82 -104.62 -0.40 -1.55 16 7 C 0.19 2.39 2.51 -68.10 -0.17 2.22 16 8 H 0.08 0.99 6.97 -51.93 -0.36 0.63 16 9 C -0.12 -1.04 6.11 -24.90 -0.15 -1.19 16 10 C -0.13 -1.08 7.09 -24.58 -0.17 -1.25 16 11 C 0.12 1.37 6.89 -2.53 -0.02 1.35 16 12 N -1.01 -14.46 2.29 -105.64 -0.24 -14.70 16 13 S 2.60 49.40 5.12 -107.50 -0.55 48.85 16 14 O -0.96 -20.79 17.61 -57.54 -1.01 -21.81 16 15 O -0.95 -20.27 15.08 -57.54 -0.87 -21.14 16 16 C -0.59 -11.83 6.12 37.16 0.23 -11.60 16 17 C 0.03 0.75 4.98 -27.88 -0.14 0.61 16 18 C -0.52 -14.58 9.11 -34.44 -0.31 -14.89 16 19 H 0.06 1.65 7.74 -52.49 -0.41 1.24 16 20 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 21 N -0.89 -26.78 13.29 55.43 0.74 -26.04 16 22 Si 0.90 21.34 29.54 -169.99 -5.02 16.32 16 23 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 24 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 25 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 26 C -0.08 -0.99 5.88 -104.63 -0.62 -1.61 16 27 C -0.12 -1.21 8.81 36.01 0.32 -0.89 16 28 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 29 H 0.06 0.49 8.09 -51.93 -0.42 0.07 16 30 H 0.07 0.54 5.95 -51.93 -0.31 0.23 16 31 H 0.12 1.22 8.06 -52.48 -0.42 0.80 16 32 H 0.12 1.44 8.06 -52.48 -0.42 1.02 16 33 H 0.11 1.75 7.02 -52.49 -0.37 1.38 16 34 H 0.08 0.57 7.55 -51.93 -0.39 0.17 16 35 H 0.08 0.69 7.84 -51.93 -0.41 0.29 16 36 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 37 H 0.08 0.60 8.14 -51.92 -0.42 0.18 16 38 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 39 H 0.08 0.84 8.14 -51.93 -0.42 0.41 16 40 H 0.12 2.14 8.14 -51.92 -0.42 1.72 16 41 H 0.12 2.12 8.14 -51.93 -0.42 1.70 16 42 H 0.03 0.89 8.14 -51.92 -0.42 0.47 16 43 H 0.03 0.92 8.14 -51.93 -0.42 0.50 16 44 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 45 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 46 H 0.07 0.56 5.95 -51.93 -0.31 0.25 16 47 H 0.07 0.56 5.90 -51.93 -0.31 0.25 16 LS Contribution 382.74 15.07 5.77 5.77 Total: -1.00 -35.51 382.74 -11.57 -47.08 By element: Atomic # 1 Polarization: 8.60 SS G_CDS: -7.49 Total: 1.11 kcal Atomic # 6 Polarization: -32.55 SS G_CDS: -2.89 Total: -35.44 kcal Atomic # 7 Polarization: -41.24 SS G_CDS: 0.49 Total: -40.75 kcal Atomic # 8 Polarization: -41.06 SS G_CDS: -1.88 Total: -42.95 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -5.02 Total: 16.32 kcal Atomic # 16 Polarization: 49.40 SS G_CDS: -0.55 Total: 48.85 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -35.51 -11.57 -47.08 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000076062385.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.300 kcal (2) G-P(sol) polarization free energy of solvation -35.513 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.813 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.567 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.080 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.380 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds