Wall clock time and date at job start Tue Mar 31 2020 06:01:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38261 * 120.00077 * 2 1 4 4 C 1.38204 * 120.00515 * 179.97438 * 3 2 1 5 5 C 1.38253 * 119.99863 * 0.07163 * 4 3 2 6 6 C 1.38220 * 120.00046 * 359.92364 * 5 4 3 7 7 C 1.50702 * 120.00039 * 180.32307 * 6 5 4 8 8 H 1.09000 * 109.86915 * 145.73817 * 7 6 5 9 9 C 1.54316 * 109.88354 * 266.92144 * 7 6 5 10 10 C 1.55158 * 102.94386 * 141.61090 * 9 7 6 11 11 C 1.54910 * 101.57907 * 324.49589 * 10 9 7 12 12 N 1.47030 * 109.88191 * 24.72971 * 7 6 5 13 13 S 1.65600 * 125.64671 * 61.67464 * 12 7 6 14 14 O 1.42100 * 104.27394 * 206.07375 * 13 12 7 15 15 O 1.42098 * 104.27707 * 333.92757 * 13 12 7 16 16 C 1.81399 * 104.44983 * 90.00223 * 13 12 7 17 17 C 1.52996 * 109.47139 * 179.97438 * 16 13 12 18 18 C 1.50704 * 109.47278 * 179.97438 * 17 16 13 19 19 H 1.07997 * 119.99575 * 359.97438 * 18 17 16 20 20 C 1.37871 * 119.99824 * 179.97438 * 18 17 16 21 21 N 1.31520 * 120.00624 * 0.02562 * 20 18 17 22 22 Si 1.86804 * 119.99745 * 179.97438 * 20 18 17 23 23 H 1.48505 * 109.46907 * 0.02562 * 22 20 18 24 24 H 1.48495 * 109.47210 * 120.00046 * 22 20 18 25 25 H 1.48503 * 109.47227 * 240.00134 * 22 20 18 26 26 C 1.38208 * 120.00389 * 180.02562 * 2 1 3 27 27 C 1.50701 * 119.99804 * 359.97438 * 26 2 1 28 28 H 1.09001 * 109.47242 * 269.97346 * 1 2 3 29 29 H 1.08999 * 109.47144 * 29.97993 * 1 2 3 30 30 H 1.09000 * 109.47061 * 149.97937 * 1 2 3 31 31 H 1.08004 * 119.99258 * 0.02562 * 3 2 1 32 32 H 1.08005 * 120.00190 * 179.97438 * 4 3 2 33 33 H 1.08002 * 120.00347 * 179.97438 * 5 4 3 34 34 H 1.09001 * 110.71843 * 259.97329 * 9 7 6 35 35 H 1.08996 * 110.72295 * 23.24507 * 9 7 6 36 36 H 1.08996 * 111.00648 * 206.42140 * 10 9 7 37 37 H 1.09008 * 111.03705 * 82.58208 * 10 9 7 38 38 H 1.09001 * 110.36629 * 278.16610 * 11 10 9 39 39 H 1.09001 * 110.45970 * 155.89245 * 11 10 9 40 40 H 1.09003 * 109.46957 * 299.99421 * 16 13 12 41 41 H 1.08994 * 109.47206 * 59.99568 * 16 13 12 42 42 H 1.09008 * 109.47421 * 300.00092 * 17 16 13 43 43 H 1.09000 * 109.47284 * 59.99339 * 17 16 13 44 44 H 0.96997 * 120.00071 * 180.02562 * 21 20 18 45 45 H 1.08999 * 109.46988 * 270.01842 * 27 26 2 46 46 H 1.08990 * 109.47415 * 30.02092 * 27 26 2 47 47 H 1.09006 * 109.46768 * 150.01991 * 27 26 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1974 0.0000 4 6 3.5803 1.1975 0.0005 5 6 4.2717 0.0002 -0.0004 6 6 3.5806 -1.1969 -0.0003 7 6 4.3342 -2.5019 0.0060 8 1 3.7834 -3.2450 0.5827 9 6 4.5351 -2.9990 -1.4411 10 6 5.9670 -3.5956 -1.4079 11 6 6.6833 -2.6309 -0.4301 12 7 5.6694 -2.3055 0.5894 13 16 5.9824 -1.8029 2.1360 14 8 7.2601 -1.1867 2.0522 15 8 4.8308 -1.0549 2.5012 16 6 6.0774 -3.3367 3.0999 17 6 6.3668 -3.0016 4.5643 18 6 6.4451 -4.2757 5.3653 19 1 6.3022 -5.2291 4.8785 20 6 6.6991 -4.2242 6.7194 21 7 6.8726 -3.0632 7.3124 22 14 6.7954 -5.8036 7.7124 23 1 6.5654 -6.9659 6.8171 24 1 8.1393 -5.9164 8.3338 25 1 5.7586 -5.7841 8.7753 26 6 2.1981 -1.1969 -0.0005 27 6 1.4446 -2.5020 -0.0005 28 1 -0.3634 -0.0005 1.0277 29 1 -0.3633 0.8902 -0.5135 30 1 -0.3633 -0.8898 -0.5142 31 1 1.6582 2.1327 0.0004 32 1 4.1203 2.1329 0.0001 33 1 5.3517 0.0002 -0.0004 34 1 3.8030 -3.7671 -1.6901 35 1 4.4794 -2.1689 -2.1452 36 1 6.4268 -3.5631 -2.3957 37 1 5.9581 -4.6130 -1.0167 38 1 7.0000 -1.7279 -0.9520 39 1 7.5403 -3.1223 0.0305 40 1 5.1291 -3.8694 3.0293 41 1 6.8769 -3.9643 2.7062 42 1 7.3153 -2.4689 4.6347 43 1 5.5676 -2.3737 4.9582 44 1 7.0516 -3.0270 8.2650 45 1 1.2631 -2.8167 1.0271 46 1 0.4922 -2.3717 -0.5142 47 1 2.0338 -3.2616 -0.5145 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000076062385.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:01:29 Heat of formation + Delta-G solvation = -78.335252 kcal Electronic energy + Delta-G solvation = -28214.399364 eV Core-core repulsion = 24487.697400 eV Total energy + Delta-G solvation = -3726.701964 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 337.150 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.12168 -38.95215 -38.18170 -37.02238 -35.94429 -34.24145 -33.59146 -33.16638 -31.88804 -29.52964 -28.09184 -27.60820 -27.10800 -24.21763 -23.46623 -22.33916 -21.75997 -21.53830 -19.70807 -19.04738 -18.34091 -17.84587 -17.15875 -16.78434 -16.68128 -16.54111 -15.99333 -15.55604 -15.22485 -15.12580 -14.81113 -14.52640 -14.34566 -14.17427 -13.81165 -13.76542 -13.60448 -13.55874 -13.32684 -13.30667 -13.15311 -12.97891 -12.93334 -12.80258 -12.63328 -12.56071 -12.32250 -12.30654 -12.12215 -11.97143 -11.81166 -11.76526 -11.67632 -11.47307 -11.18290 -10.69093 -10.04987 -9.36750 -9.35871 -8.29076 -6.44184 -0.77800 0.48767 0.52087 1.39105 1.40270 1.53731 1.72741 2.35917 2.80221 2.84975 3.03978 3.06811 3.62425 3.65980 3.83357 3.96536 3.97214 4.06197 4.09473 4.15484 4.17822 4.32810 4.38657 4.53482 4.61559 4.64841 4.67482 4.77095 4.80190 4.86587 4.92647 4.96818 5.00385 5.04747 5.07435 5.10622 5.19122 5.19378 5.22004 5.29609 5.36797 5.45297 5.50200 5.62933 5.64374 5.73278 5.81993 6.01534 6.21402 6.69399 7.26497 8.83646 Molecular weight = 337.15amu Principal moments of inertia in cm(-1) A = 0.013377 B = 0.003565 C = 0.003324 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2092.622055 B = 7851.637302 C = 8421.323481 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.100 4.100 3 C -0.130 4.130 4 C -0.140 4.140 5 C -0.122 4.122 6 C -0.094 4.094 7 C 0.181 3.819 8 H 0.094 0.906 9 C -0.108 4.108 10 C -0.118 4.118 11 C 0.105 3.895 12 N -1.007 6.007 13 S 2.619 3.381 14 O -0.997 6.997 15 O -0.976 6.976 16 C -0.589 4.589 17 C 0.023 3.977 18 C -0.539 4.539 19 H 0.077 0.923 20 C -0.004 4.004 21 N -0.935 5.935 22 Si 0.977 3.023 23 H -0.254 1.254 24 H -0.277 1.277 25 H -0.277 1.277 26 C -0.090 4.090 27 C -0.122 4.122 28 H 0.069 0.931 29 H 0.076 0.924 30 H 0.086 0.914 31 H 0.138 0.862 32 H 0.124 0.876 33 H 0.096 0.904 34 H 0.111 0.889 35 H 0.077 0.923 36 H 0.107 0.893 37 H 0.091 0.909 38 H 0.066 0.934 39 H 0.079 0.921 40 H 0.139 0.861 41 H 0.139 0.861 42 H 0.002 0.998 43 H 0.004 0.996 44 H 0.268 0.732 45 H 0.068 0.932 46 H 0.091 0.909 47 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.760 -1.240 -23.248 25.647 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.100 4.100 3 C -0.148 4.148 4 C -0.158 4.158 5 C -0.140 4.140 6 C -0.095 4.095 7 C 0.076 3.924 8 H 0.111 0.889 9 C -0.147 4.147 10 C -0.156 4.156 11 C -0.019 4.019 12 N -0.845 5.845 13 S 2.719 3.281 14 O -0.987 6.987 15 O -0.966 6.966 16 C -0.721 4.721 17 C -0.016 4.016 18 C -0.578 4.578 19 H 0.095 0.905 20 C -0.203 4.203 21 N -0.575 5.575 22 Si 0.800 3.200 23 H -0.177 1.177 24 H -0.202 1.202 25 H -0.202 1.202 26 C -0.090 4.090 27 C -0.178 4.178 28 H 0.088 0.912 29 H 0.095 0.905 30 H 0.105 0.895 31 H 0.155 0.845 32 H 0.142 0.858 33 H 0.114 0.886 34 H 0.129 0.871 35 H 0.096 0.904 36 H 0.126 0.874 37 H 0.110 0.890 38 H 0.084 0.916 39 H 0.098 0.902 40 H 0.158 0.842 41 H 0.157 0.843 42 H 0.021 0.979 43 H 0.022 0.978 44 H 0.077 0.923 45 H 0.086 0.914 46 H 0.109 0.891 47 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -10.590 -0.209 -22.754 25.099 hybrid contribution 0.678 -0.358 1.403 1.598 sum -9.913 -0.568 -21.351 23.547 Atomic orbital electron populations 1.20872 0.89113 1.04037 1.02730 1.20118 0.97565 0.92378 0.99911 1.21230 0.93765 0.98598 1.01222 1.21259 0.95375 0.97915 1.01265 1.20858 0.98923 0.93380 1.00876 1.20122 0.93939 0.95124 1.00350 1.20540 0.81153 0.93244 0.97484 0.88863 1.22686 0.98609 1.01498 0.91899 1.22828 0.94183 0.98719 0.99911 1.22308 0.90770 0.99493 0.89377 1.58595 1.14055 1.85125 1.26709 1.04560 0.72896 0.77336 0.73353 1.93485 1.44216 1.74958 1.86086 1.93554 1.51085 1.68917 1.83043 1.30400 1.11785 1.20595 1.09275 1.18800 0.95717 0.98275 0.88823 1.21526 1.49544 0.93029 0.93701 0.90500 1.26164 0.94294 1.00450 0.99362 1.70120 1.49020 1.26874 1.11467 0.85227 0.77933 0.78597 0.78279 1.17713 1.20239 1.20231 1.19832 0.92400 0.96588 1.00193 1.21017 1.00885 0.93033 1.02900 0.91248 0.90520 0.89542 0.84457 0.85793 0.88608 0.87076 0.90431 0.87436 0.89045 0.91582 0.90249 0.84245 0.84280 0.97927 0.97791 0.92326 0.91382 0.89066 0.89745 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.81 9.60 71.23 0.68 -1.13 16 2 C -0.10 -2.39 5.88 -19.87 -0.12 -2.51 16 3 C -0.13 -3.35 9.70 22.27 0.22 -3.13 16 4 C -0.14 -4.14 10.05 22.27 0.22 -3.92 16 5 C -0.12 -3.89 7.63 22.27 0.17 -3.72 16 6 C -0.09 -2.63 3.82 -19.86 -0.08 -2.71 16 7 C 0.18 4.23 2.51 44.59 0.11 4.34 16 8 H 0.09 1.99 6.97 -2.39 -0.02 1.97 16 9 C -0.11 -1.57 6.11 31.78 0.19 -1.37 16 10 C -0.12 -1.52 7.09 31.99 0.23 -1.30 16 11 C 0.10 2.24 6.89 86.86 0.60 2.84 16 12 N -1.01 -28.24 2.29 -488.13 -1.12 -29.36 16 13 S 2.62 102.86 5.12 -56.49 -0.29 102.57 16 14 O -1.00 -45.12 17.61 -127.65 -2.25 -47.37 16 15 O -0.98 -43.75 15.08 -127.65 -1.93 -45.67 16 16 C -0.59 -23.73 6.12 71.98 0.44 -23.29 16 17 C 0.02 1.24 4.98 29.85 0.15 1.39 16 18 C -0.54 -30.55 9.11 25.60 0.23 -30.31 16 19 H 0.08 4.01 7.74 -2.91 -0.02 3.98 16 20 C 0.00 -0.25 5.46 84.65 0.46 0.21 16 21 N -0.94 -57.94 13.29 21.45 0.28 -57.66 16 22 Si 0.98 43.61 29.54 68.60 2.03 45.64 16 23 H -0.25 -10.49 7.11 99.48 0.71 -9.78 16 24 H -0.28 -12.06 7.11 99.48 0.71 -11.36 16 25 H -0.28 -12.06 7.11 99.48 0.71 -11.35 16 26 C -0.09 -2.21 5.88 -19.87 -0.12 -2.33 16 27 C -0.12 -2.09 8.81 71.24 0.63 -1.46 16 28 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 29 H 0.08 1.02 8.09 -2.39 -0.02 1.00 16 30 H 0.09 1.08 5.95 -2.39 -0.01 1.06 16 31 H 0.14 2.79 8.06 -2.91 -0.02 2.76 16 32 H 0.12 3.26 8.06 -2.91 -0.02 3.23 16 33 H 0.10 3.22 7.02 -2.91 -0.02 3.20 16 34 H 0.11 1.00 7.55 -2.39 -0.02 0.99 16 35 H 0.08 1.17 7.84 -2.39 -0.02 1.15 16 36 H 0.11 0.91 8.14 -2.39 -0.02 0.89 16 37 H 0.09 1.00 8.14 -2.38 -0.02 0.98 16 38 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 39 H 0.08 1.64 8.14 -2.39 -0.02 1.62 16 40 H 0.14 4.94 8.14 -2.39 -0.02 4.93 16 41 H 0.14 4.92 8.14 -2.39 -0.02 4.90 16 42 H 0.00 0.14 8.14 -2.38 -0.02 0.12 16 43 H 0.00 0.22 8.14 -2.39 -0.02 0.20 16 44 H 0.27 15.42 8.31 -92.71 -0.77 14.65 16 45 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 46 H 0.09 1.13 5.95 -2.39 -0.01 1.12 16 47 H 0.08 1.11 5.90 -2.38 -0.01 1.09 16 Total: -1.00 -80.80 382.74 1.71 -79.09 By element: Atomic # 1 Polarization: 20.19 SS G_CDS: 0.95 Total: 21.15 kcal Atomic # 6 Polarization: -72.42 SS G_CDS: 4.03 Total: -68.39 kcal Atomic # 7 Polarization: -86.18 SS G_CDS: -0.84 Total: -87.02 kcal Atomic # 8 Polarization: -88.86 SS G_CDS: -4.17 Total: -93.04 kcal Atomic # 14 Polarization: 43.61 SS G_CDS: 2.03 Total: 45.64 kcal Atomic # 16 Polarization: 102.86 SS G_CDS: -0.29 Total: 102.57 kcal Total: -80.80 1.71 -79.09 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000076062385.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.758 kcal (2) G-P(sol) polarization free energy of solvation -80.802 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.043 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.708 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.094 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.335 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds