Wall clock time and date at job start Tue Mar 31 2020 06:02:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38237 * 119.99698 * 2 1 4 4 C 1.38232 * 119.99739 * 179.97438 * 3 2 1 5 5 C 1.38229 * 120.00408 * 0.02562 * 4 3 2 6 6 C 1.50703 * 120.00449 * 179.97438 * 5 4 3 7 7 H 1.08996 * 109.58001 * 328.22190 * 6 5 4 8 8 C 1.53196 * 109.70303 * 207.87162 * 6 5 4 9 9 C 1.53039 * 109.31074 * 185.50552 * 8 6 5 10 10 C 1.53040 * 109.54004 * 61.36295 * 9 8 6 11 11 C 1.53622 * 109.24348 * 298.51629 * 10 9 8 12 12 N 1.46917 * 109.58715 * 88.51012 * 6 5 4 13 13 S 1.65603 * 120.63162 * 353.51655 * 12 6 5 14 14 O 1.42103 * 104.27671 * 162.75550 * 13 12 6 15 15 O 1.42094 * 104.27715 * 34.89887 * 13 12 6 16 16 C 1.81402 * 104.45022 * 278.82809 * 13 12 6 17 17 C 1.52998 * 109.47313 * 174.70627 * 16 13 12 18 18 C 1.50690 * 109.47250 * 180.02562 * 17 16 13 19 19 H 1.08007 * 120.00458 * 359.97438 * 18 17 16 20 20 C 1.37875 * 120.00109 * 179.97438 * 18 17 16 21 21 N 1.31511 * 120.00060 * 359.97438 * 20 18 17 22 22 Si 1.86809 * 120.00199 * 179.97438 * 20 18 17 23 23 H 1.48500 * 109.47014 * 0.02562 * 22 20 18 24 24 H 1.48503 * 109.46990 * 119.99943 * 22 20 18 25 25 H 1.48494 * 109.47179 * 239.99881 * 22 20 18 26 26 C 1.38236 * 119.99902 * 0.25334 * 5 4 3 27 27 C 1.38228 * 120.00103 * 180.02562 * 2 1 3 28 28 H 1.08995 * 109.47285 * 89.99591 * 1 2 3 29 29 H 1.09008 * 109.46506 * 209.99755 * 1 2 3 30 30 H 1.09004 * 109.46849 * 329.99296 * 1 2 3 31 31 H 1.08005 * 120.00129 * 0.02562 * 3 2 1 32 32 H 1.08001 * 119.99664 * 180.02562 * 4 3 2 33 33 H 1.09002 * 109.49853 * 305.45880 * 8 6 5 34 34 H 1.09002 * 109.49954 * 65.55431 * 8 6 5 35 35 H 1.09000 * 109.45991 * 181.38870 * 9 8 6 36 36 H 1.08999 * 109.45637 * 301.34424 * 9 8 6 37 37 H 1.09006 * 109.49650 * 58.58442 * 10 9 8 38 38 H 1.08996 * 109.50175 * 178.65141 * 10 9 8 39 39 H 1.09008 * 109.73586 * 295.11282 * 11 10 9 40 40 H 1.08996 * 109.66512 * 174.54720 * 11 10 9 41 41 H 1.09001 * 109.47030 * 54.70040 * 16 13 12 42 42 H 1.09000 * 109.46884 * 294.70746 * 16 13 12 43 43 H 1.08996 * 109.47311 * 59.99330 * 17 16 13 44 44 H 1.09005 * 109.46803 * 299.99936 * 17 16 13 45 45 H 0.97001 * 120.00314 * 179.97438 * 21 20 18 46 46 H 1.07995 * 120.00553 * 179.73017 * 26 5 4 47 47 H 1.08002 * 120.00368 * 359.97438 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1972 0.0000 4 6 3.5805 1.1972 0.0005 5 6 4.2717 0.0002 0.0005 6 6 5.7787 0.0002 0.0005 7 1 6.1440 0.8732 -0.5403 8 6 6.2952 -1.2748 -0.6737 9 6 7.8193 -1.3323 -0.5474 10 6 8.2090 -1.3763 0.9319 11 6 7.7147 -0.0970 1.6240 12 7 6.2713 0.0362 1.3842 13 16 5.2202 0.2300 2.6492 14 8 5.9611 -0.1878 3.7876 15 8 4.0495 -0.4646 2.2417 16 6 4.9112 2.0164 2.7113 17 6 3.8432 2.3130 3.7659 18 6 3.5861 3.7969 3.8171 19 1 4.1303 4.4622 3.1631 20 6 2.6561 4.3054 4.6987 21 7 1.9929 3.4954 5.4947 22 14 2.3378 6.1451 4.7627 23 1 3.2059 6.8323 3.7730 24 1 0.9130 6.4124 4.4405 25 1 2.6410 6.6529 6.1247 26 6 3.5806 -1.1970 -0.0053 27 6 2.1982 -1.1971 -0.0005 28 1 -0.3633 0.0001 -1.0276 29 1 -0.3633 -0.8901 0.5139 30 1 -0.3633 0.8900 0.5140 31 1 1.6581 2.1325 0.0004 32 1 4.1204 2.1326 0.0010 33 1 5.8567 -2.1465 -0.1879 34 1 6.0176 -1.2670 -1.7277 35 1 8.1917 -2.2262 -1.0478 36 1 8.2557 -0.4480 -1.0117 37 1 7.7525 -2.2471 1.4027 38 1 9.2934 -1.4414 1.0208 39 1 8.2348 0.7684 1.2129 40 1 7.9025 -0.1637 2.6956 41 1 4.5644 2.3593 1.7365 42 1 5.8334 2.5358 2.9721 43 1 4.1900 1.9701 4.7407 44 1 2.9210 1.7936 3.5051 45 1 1.3389 3.8532 6.1153 46 1 4.1206 -2.1323 -0.0097 47 1 1.6583 -2.1324 -0.0005 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000078904003.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:02:09 Heat of formation + Delta-G solvation = -48.408713 kcal Electronic energy + Delta-G solvation = -29022.350187 eV Core-core repulsion = 25296.945935 eV Total energy + Delta-G solvation = -3725.404252 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 337.150 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -39.84242 -37.93645 -36.44902 -35.24204 -33.86250 -33.36431 -32.36480 -31.20477 -30.54519 -30.23194 -26.53368 -25.57782 -24.20379 -23.35965 -22.33783 -21.48259 -20.60276 -20.18590 -18.27360 -17.45176 -16.49576 -15.97846 -15.79932 -15.40036 -15.09537 -14.80387 -14.57130 -14.46215 -14.28999 -14.08229 -13.53296 -13.51507 -13.27375 -13.21504 -12.86329 -12.48609 -12.42195 -12.18360 -11.88598 -11.68167 -11.62555 -11.44435 -11.27987 -11.25654 -11.07465 -10.97483 -10.90077 -10.86387 -10.57845 -10.44712 -10.34738 -10.32205 -10.21384 -9.69521 -9.24833 -8.67703 -8.47632 -8.36638 -7.95072 -6.09229 -4.14100 0.90159 1.64006 1.90965 3.15839 3.25760 3.33212 3.36496 4.15650 4.35941 4.44428 4.51746 4.67951 4.72238 4.85663 5.00653 5.07541 5.20151 5.24324 5.26085 5.32054 5.36879 5.38472 5.59142 5.62912 5.67991 5.68634 5.73812 5.79357 5.84108 5.87398 5.89411 5.93695 5.96322 6.10154 6.11921 6.25688 6.28608 6.45138 6.50282 6.58851 6.78202 6.83924 6.91152 7.02645 7.36061 7.44243 7.45364 7.84071 8.22669 8.89393 9.50189 11.01814 Molecular weight = 337.15amu Principal moments of inertia in cm(-1) A = 0.011291 B = 0.004973 C = 0.003887 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2479.209426 B = 5629.274730 C = 7201.896928 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.075 4.075 3 C -0.110 4.110 4 C -0.116 4.116 5 C -0.115 4.115 6 C 0.202 3.798 7 H 0.079 0.921 8 C -0.127 4.127 9 C -0.116 4.116 10 C -0.131 4.131 11 C 0.115 3.885 12 N -1.001 6.001 13 S 2.582 3.418 14 O -0.976 6.976 15 O -0.939 6.939 16 C -0.596 4.596 17 C 0.035 3.965 18 C -0.515 4.515 19 H 0.060 0.940 20 C 0.059 3.941 21 N -0.890 5.890 22 Si 0.896 3.104 23 H -0.272 1.272 24 H -0.282 1.282 25 H -0.282 1.282 26 C -0.042 4.042 27 C -0.116 4.116 28 H 0.064 0.936 29 H 0.063 0.937 30 H 0.067 0.933 31 H 0.120 0.880 32 H 0.120 0.880 33 H 0.073 0.927 34 H 0.073 0.927 35 H 0.062 0.938 36 H 0.063 0.937 37 H 0.066 0.934 38 H 0.071 0.929 39 H 0.065 0.935 40 H 0.096 0.904 41 H 0.121 0.879 42 H 0.113 0.887 43 H 0.026 0.974 44 H 0.035 0.965 45 H 0.263 0.737 46 H 0.115 0.885 47 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.466 -9.278 -15.588 19.616 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.075 4.075 3 C -0.128 4.128 4 C -0.134 4.134 5 C -0.117 4.117 6 C 0.097 3.903 7 H 0.097 0.903 8 C -0.166 4.166 9 C -0.154 4.154 10 C -0.170 4.170 11 C -0.010 4.010 12 N -0.837 5.837 13 S 2.683 3.317 14 O -0.967 6.967 15 O -0.929 6.929 16 C -0.729 4.729 17 C -0.004 4.004 18 C -0.555 4.555 19 H 0.078 0.922 20 C -0.144 4.144 21 N -0.529 5.529 22 Si 0.723 3.277 23 H -0.197 1.197 24 H -0.208 1.208 25 H -0.208 1.208 26 C -0.060 4.060 27 C -0.135 4.135 28 H 0.083 0.917 29 H 0.082 0.918 30 H 0.086 0.914 31 H 0.138 0.862 32 H 0.138 0.862 33 H 0.091 0.909 34 H 0.092 0.908 35 H 0.081 0.919 36 H 0.082 0.918 37 H 0.085 0.915 38 H 0.089 0.911 39 H 0.083 0.917 40 H 0.115 0.885 41 H 0.140 0.860 42 H 0.131 0.869 43 H 0.044 0.956 44 H 0.053 0.947 45 H 0.073 0.927 46 H 0.133 0.867 47 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 7.043 -10.014 -14.885 19.274 hybrid contribution -0.040 1.723 0.083 1.725 sum 7.003 -8.292 -14.802 18.355 Atomic orbital electron populations 1.20792 0.91841 1.02955 1.01535 1.19822 0.95591 0.93374 0.98741 1.20853 0.93864 0.97502 1.00598 1.20966 0.94896 0.96651 1.00930 1.19651 0.93412 0.94541 1.04061 1.19671 0.89708 0.98572 0.82371 0.90344 1.21995 0.95848 0.98177 1.00596 1.21485 0.95689 1.01855 0.96377 1.21931 1.00682 0.98472 0.95934 1.21516 0.79946 0.97580 1.01987 1.58099 1.17694 1.88972 1.18907 1.05944 0.73867 0.79432 0.72483 1.93489 1.71991 1.81633 1.49541 1.93717 1.48303 1.70946 1.79960 1.30653 1.10064 1.21666 1.10506 1.18872 0.91283 0.99313 0.90958 1.21030 1.22235 0.91161 1.21048 0.92167 1.25043 0.95752 0.98195 0.95375 1.69968 1.25416 1.34683 1.22803 0.86476 0.78130 0.85069 0.77994 1.19667 1.20824 1.20831 1.20621 0.93850 0.96593 0.94979 1.20788 0.94081 0.96966 1.01617 0.91747 0.91801 0.91394 0.86187 0.86179 0.90866 0.90819 0.91894 0.91838 0.91485 0.91059 0.91699 0.88544 0.86040 0.86892 0.95561 0.94696 0.92690 0.86729 0.86908 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.46 10.01 36.01 0.36 -1.10 16 2 C -0.08 -1.16 5.88 -104.62 -0.62 -1.77 16 3 C -0.11 -1.77 9.70 -39.58 -0.38 -2.15 16 4 C -0.12 -1.79 7.27 -39.59 -0.29 -2.08 16 5 C -0.11 -1.68 2.84 -104.62 -0.30 -1.98 16 6 C 0.20 2.52 3.14 -68.75 -0.22 2.30 16 7 H 0.08 0.85 8.10 -51.93 -0.42 0.43 16 8 C -0.13 -1.29 4.80 -26.61 -0.13 -1.42 16 9 C -0.12 -1.02 5.88 -26.69 -0.16 -1.17 16 10 C -0.13 -1.30 6.10 -26.39 -0.16 -1.46 16 11 C 0.12 1.38 6.49 -3.49 -0.02 1.36 16 12 N -1.00 -14.27 3.21 -107.46 -0.34 -14.62 16 13 S 2.58 48.94 4.88 -107.50 -0.52 48.42 16 14 O -0.98 -21.24 16.37 -57.54 -0.94 -22.18 16 15 O -0.94 -19.16 12.46 -57.54 -0.72 -19.88 16 16 C -0.60 -12.05 5.87 37.16 0.22 -11.83 16 17 C 0.03 0.91 4.98 -27.89 -0.14 0.77 16 18 C -0.52 -14.36 9.11 -34.45 -0.31 -14.67 16 19 H 0.06 1.60 7.74 -52.48 -0.41 1.19 16 20 C 0.06 1.66 5.46 -17.82 -0.10 1.57 16 21 N -0.89 -26.68 13.29 55.43 0.74 -25.94 16 22 Si 0.90 21.32 29.54 -169.99 -5.02 16.30 16 23 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 24 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 25 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 26 C -0.04 -0.62 6.92 -39.58 -0.27 -0.89 16 27 C -0.12 -1.74 9.58 -39.58 -0.38 -2.12 16 28 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 29 H 0.06 0.77 8.09 -51.92 -0.42 0.35 16 30 H 0.07 0.89 8.09 -51.93 -0.42 0.47 16 31 H 0.12 1.82 8.06 -52.48 -0.42 1.40 16 32 H 0.12 1.69 6.72 -52.49 -0.35 1.34 16 33 H 0.07 0.80 6.22 -51.93 -0.32 0.47 16 34 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 35 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 36 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 37 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 38 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 39 H 0.06 0.64 8.14 -51.92 -0.42 0.22 16 40 H 0.10 1.28 6.66 -51.93 -0.35 0.94 16 41 H 0.12 2.24 4.94 -51.92 -0.26 1.98 16 42 H 0.11 2.11 8.14 -51.92 -0.42 1.69 16 43 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 44 H 0.03 0.97 8.14 -51.93 -0.42 0.54 16 45 H 0.26 7.38 8.31 -40.82 -0.34 7.05 16 46 H 0.11 1.50 6.00 -52.49 -0.31 1.19 16 47 H 0.11 1.44 8.06 -52.49 -0.42 1.02 16 LS Contribution 373.50 15.07 5.63 5.63 Total: -1.00 -34.11 373.50 -11.55 -45.66 By element: Atomic # 1 Polarization: 10.75 SS G_CDS: -7.47 Total: 3.28 kcal Atomic # 6 Polarization: -33.76 SS G_CDS: -2.89 Total: -36.66 kcal Atomic # 7 Polarization: -40.96 SS G_CDS: 0.39 Total: -40.56 kcal Atomic # 8 Polarization: -40.41 SS G_CDS: -1.66 Total: -42.06 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.02 Total: 16.30 kcal Atomic # 16 Polarization: 48.94 SS G_CDS: -0.52 Total: 48.42 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -34.11 -11.55 -45.66 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000078904003.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.752 kcal (2) G-P(sol) polarization free energy of solvation -34.112 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.864 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.545 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.657 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.409 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds