Wall clock time and date at job start Tue Mar 31 2020 06:02:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38239 * 120.00026 * 2 1 4 4 C 1.38233 * 120.00006 * 179.97438 * 3 2 1 5 5 C 1.38232 * 120.00078 * 0.26994 * 4 3 2 6 6 C 1.50694 * 120.00204 * 179.72780 * 5 4 3 7 7 H 1.09004 * 109.58535 * 34.79478 * 6 5 4 8 8 C 1.53196 * 109.59144 * 155.07883 * 6 5 4 9 9 C 1.53034 * 109.31529 * 174.42221 * 8 6 5 10 10 C 1.53042 * 109.54131 * 298.63666 * 9 8 6 11 11 C 1.53199 * 109.31199 * 61.36387 * 10 9 8 12 12 N 1.46935 * 109.58895 * 274.51385 * 6 5 4 13 13 S 1.65600 * 120.62587 * 6.60787 * 12 6 5 14 14 O 1.42103 * 104.27318 * 197.31458 * 13 12 6 15 15 O 1.42096 * 104.27607 * 325.16516 * 13 12 6 16 16 C 1.81393 * 104.45170 * 81.24201 * 13 12 6 17 17 C 1.53000 * 109.47235 * 179.97438 * 16 13 12 18 18 C 1.50697 * 109.47084 * 179.97438 * 17 16 13 19 19 H 1.07998 * 120.00538 * 0.02562 * 18 17 16 20 20 C 1.37876 * 119.99831 * 179.97438 * 18 17 16 21 21 N 1.31521 * 120.00076 * 359.97438 * 20 18 17 22 22 Si 1.86806 * 120.00253 * 179.97438 * 20 18 17 23 23 H 1.48505 * 109.46836 * 60.00043 * 22 20 18 24 24 H 1.48494 * 109.47257 * 179.97438 * 22 20 18 25 25 H 1.48502 * 109.46945 * 300.00129 * 22 20 18 26 26 C 1.38242 * 119.99836 * 359.52074 * 5 4 3 27 27 C 1.38232 * 119.99969 * 179.97438 * 2 1 3 28 28 H 1.09004 * 109.46895 * 90.00094 * 1 2 3 29 29 H 1.09000 * 109.46793 * 210.00232 * 1 2 3 30 30 H 1.08996 * 109.47060 * 329.99886 * 1 2 3 31 31 H 1.08005 * 119.99793 * 359.97438 * 3 2 1 32 32 H 1.08002 * 119.99505 * 180.02562 * 4 3 2 33 33 H 1.08997 * 109.49486 * 294.38093 * 8 6 5 34 34 H 1.09006 * 109.49224 * 54.47328 * 8 6 5 35 35 H 1.09002 * 109.45905 * 58.65602 * 9 8 6 36 36 H 1.09003 * 109.46202 * 178.61470 * 9 8 6 37 37 H 1.08994 * 109.49973 * 181.31508 * 10 9 8 38 38 H 1.08999 * 109.49537 * 301.38679 * 10 9 8 39 39 H 1.08997 * 109.58646 * 65.15359 * 11 10 9 40 40 H 1.08997 * 109.58441 * 185.43679 * 11 10 9 41 41 H 1.09001 * 109.47303 * 299.99445 * 16 13 12 42 42 H 1.08999 * 109.47298 * 59.99405 * 16 13 12 43 43 H 1.09001 * 109.47024 * 299.99592 * 17 16 13 44 44 H 1.08999 * 109.47284 * 59.99617 * 17 16 13 45 45 H 0.97006 * 119.99927 * 179.97438 * 21 20 18 46 46 H 1.08001 * 119.99970 * 180.27527 * 26 5 4 47 47 H 1.07996 * 120.00047 * 359.97438 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1972 0.0000 4 6 3.5806 1.1972 0.0005 5 6 4.2717 0.0001 -0.0046 6 6 5.7787 0.0001 -0.0102 7 1 6.1463 0.8422 0.5763 8 6 6.2946 -1.3101 0.5933 9 6 7.8180 -1.3644 0.4580 10 6 8.2019 -1.3307 -1.0230 11 6 7.7077 -0.0207 -1.6448 12 7 6.2662 0.1119 -1.3918 13 16 5.2107 0.3779 -2.6398 14 8 5.9458 0.0210 -3.8024 15 8 4.0395 -0.3346 -2.2662 16 6 4.9072 2.1659 -2.6027 17 6 3.9351 2.5416 -3.7229 18 6 3.6825 4.0269 -3.6916 19 1 4.1671 4.6416 -2.9475 20 6 2.8335 4.6013 -4.6137 21 7 2.2445 3.8530 -5.5209 22 14 2.5197 6.4424 -4.5746 23 1 3.8015 7.1672 -4.7669 24 1 1.5773 6.8072 -5.6627 25 1 1.9313 6.8165 -3.2634 26 6 3.5805 -1.1971 -0.0002 27 6 2.1982 -1.1971 0.0005 28 1 -0.3633 0.0000 -1.0277 29 1 -0.3633 -0.8900 0.5139 30 1 -0.3633 0.8899 0.5138 31 1 1.6582 2.1325 -0.0004 32 1 4.1205 2.1325 0.0010 33 1 6.0209 -1.3578 1.6473 34 1 5.8520 -2.1537 0.0635 35 1 8.2585 -0.5070 0.9670 36 1 8.1900 -2.2845 0.9087 37 1 9.2858 -1.3929 -1.1194 38 1 7.7418 -2.1743 -1.5374 39 1 8.2346 0.8198 -1.1932 40 1 7.8928 -0.0334 -2.7189 41 1 4.4765 2.4414 -1.6400 42 1 5.8482 2.6973 -2.7452 43 1 4.3662 2.2662 -4.6855 44 1 2.9941 2.0102 -3.5808 45 1 1.6469 4.2571 -6.1694 46 1 4.1206 -2.1324 0.0003 47 1 1.6582 -2.1324 0.0014 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000078904004.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:02:12 Heat of formation + Delta-G solvation = -47.513222 kcal Electronic energy + Delta-G solvation = -28984.865944 eV Core-core repulsion = 25259.500524 eV Total energy + Delta-G solvation = -3725.365421 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 337.150 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -39.86708 -37.95414 -36.45231 -35.24522 -33.87449 -33.38983 -32.38176 -31.23561 -30.55632 -30.24645 -26.55662 -25.58624 -24.22349 -23.38383 -22.34027 -21.48306 -20.62903 -20.18162 -18.28121 -17.45734 -16.48836 -16.01028 -15.81426 -15.41440 -15.11254 -14.82914 -14.58460 -14.47280 -14.29984 -14.09360 -13.53867 -13.49553 -13.30019 -13.24507 -12.86602 -12.48286 -12.42944 -12.18307 -11.93963 -11.68842 -11.62382 -11.45551 -11.28816 -11.25890 -11.05473 -10.97126 -10.91264 -10.86914 -10.58233 -10.46384 -10.36774 -10.34518 -10.20026 -9.69412 -9.26940 -8.68504 -8.47391 -8.39516 -7.97870 -6.09139 -4.14294 0.89605 1.62675 1.87553 3.15217 3.27819 3.32787 3.34474 4.13241 4.35703 4.43549 4.51398 4.67151 4.70959 4.84752 5.00225 5.06902 5.17318 5.22374 5.25899 5.31070 5.34485 5.36421 5.57341 5.62807 5.66042 5.68379 5.71184 5.78954 5.84780 5.88009 5.88232 5.93081 5.96044 6.06216 6.10290 6.25280 6.27680 6.42882 6.47644 6.58707 6.76474 6.82303 6.88358 6.99573 7.35648 7.42631 7.43295 7.83625 8.22296 8.88687 9.49908 11.01841 Molecular weight = 337.15amu Principal moments of inertia in cm(-1) A = 0.011173 B = 0.004938 C = 0.003844 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2505.429440 B = 5668.692512 C = 7281.685867 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.077 4.077 3 C -0.108 4.108 4 C -0.120 4.120 5 C -0.109 4.109 6 C 0.202 3.798 7 H 0.079 0.921 8 C -0.128 4.128 9 C -0.116 4.116 10 C -0.131 4.131 11 C 0.115 3.885 12 N -1.000 6.000 13 S 2.583 3.417 14 O -0.974 6.974 15 O -0.940 6.940 16 C -0.598 4.598 17 C 0.035 3.965 18 C -0.517 4.517 19 H 0.059 0.941 20 C 0.059 3.941 21 N -0.891 5.891 22 Si 0.897 3.103 23 H -0.276 1.276 24 H -0.285 1.285 25 H -0.275 1.275 26 C -0.051 4.051 27 C -0.115 4.115 28 H 0.071 0.929 29 H 0.060 0.940 30 H 0.063 0.937 31 H 0.121 0.879 32 H 0.122 0.878 33 H 0.073 0.927 34 H 0.073 0.927 35 H 0.063 0.937 36 H 0.062 0.938 37 H 0.071 0.929 38 H 0.066 0.934 39 H 0.064 0.936 40 H 0.097 0.903 41 H 0.124 0.876 42 H 0.113 0.887 43 H 0.028 0.972 44 H 0.032 0.968 45 H 0.265 0.735 46 H 0.116 0.884 47 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.891 -10.235 15.489 19.803 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.077 4.077 3 C -0.126 4.126 4 C -0.139 4.139 5 C -0.110 4.110 6 C 0.096 3.904 7 H 0.097 0.903 8 C -0.167 4.167 9 C -0.154 4.154 10 C -0.171 4.171 11 C -0.010 4.010 12 N -0.837 5.837 13 S 2.683 3.317 14 O -0.965 6.965 15 O -0.930 6.930 16 C -0.731 4.731 17 C -0.004 4.004 18 C -0.556 4.556 19 H 0.078 0.922 20 C -0.143 4.143 21 N -0.529 5.529 22 Si 0.724 3.276 23 H -0.201 1.201 24 H -0.211 1.211 25 H -0.201 1.201 26 C -0.070 4.070 27 C -0.133 4.133 28 H 0.090 0.910 29 H 0.079 0.921 30 H 0.082 0.918 31 H 0.139 0.861 32 H 0.140 0.860 33 H 0.092 0.908 34 H 0.092 0.908 35 H 0.082 0.918 36 H 0.081 0.919 37 H 0.090 0.910 38 H 0.085 0.915 39 H 0.083 0.917 40 H 0.115 0.885 41 H 0.142 0.858 42 H 0.132 0.868 43 H 0.046 0.954 44 H 0.051 0.949 45 H 0.074 0.926 46 H 0.134 0.866 47 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 6.470 -10.928 14.734 19.452 hybrid contribution -0.020 1.716 0.024 1.716 sum 6.450 -9.212 14.758 18.554 Atomic orbital electron populations 1.20793 0.91818 1.02006 1.02484 1.19822 0.95588 0.93381 0.98893 1.20858 0.93856 0.97516 1.00359 1.21012 0.94985 0.96710 1.01155 1.19645 0.93430 0.94528 1.03426 1.19672 0.89737 0.98341 0.82649 0.90284 1.22001 0.95887 0.97843 1.00928 1.21486 0.95685 1.01846 0.96393 1.21859 1.00740 0.98297 0.96155 1.21422 0.79986 0.97432 1.02169 1.58107 1.17902 1.88044 1.19624 1.05908 0.73840 0.79364 0.72545 1.93492 1.72160 1.83173 1.47671 1.93707 1.48225 1.70149 1.80952 1.30711 1.10058 1.21590 1.10760 1.18867 0.92442 0.98926 0.90171 1.20954 1.27555 0.91655 1.15484 0.92249 1.25046 0.95649 0.98402 0.95248 1.69954 1.29813 1.35637 1.17499 0.86579 0.78201 0.85022 0.77761 1.20118 1.21086 1.20088 1.20658 0.93878 0.96646 0.95795 1.20794 0.94085 0.96967 1.01472 0.91010 0.92080 0.91830 0.86148 0.86032 0.90791 0.90837 0.91823 0.91881 0.90997 0.91498 0.91746 0.88515 0.85836 0.86846 0.95370 0.94935 0.92562 0.86630 0.86881 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.43 10.01 36.01 0.36 -1.07 16 2 C -0.08 -1.16 5.88 -104.62 -0.62 -1.78 16 3 C -0.11 -1.72 9.70 -39.58 -0.38 -2.10 16 4 C -0.12 -1.85 7.01 -39.59 -0.28 -2.13 16 5 C -0.11 -1.58 2.87 -104.63 -0.30 -1.88 16 6 C 0.20 2.50 3.14 -68.75 -0.22 2.28 16 7 H 0.08 0.85 8.12 -51.93 -0.42 0.43 16 8 C -0.13 -1.29 4.72 -26.61 -0.13 -1.42 16 9 C -0.12 -1.01 5.88 -26.69 -0.16 -1.17 16 10 C -0.13 -1.30 6.08 -26.61 -0.16 -1.46 16 11 C 0.12 1.39 6.46 -3.69 -0.02 1.37 16 12 N -1.00 -14.30 3.22 -107.67 -0.35 -14.64 16 13 S 2.58 49.04 4.86 -107.50 -0.52 48.52 16 14 O -0.97 -21.33 16.37 -57.54 -0.94 -22.27 16 15 O -0.94 -19.17 12.58 -57.54 -0.72 -19.89 16 16 C -0.60 -12.09 5.87 37.16 0.22 -11.87 16 17 C 0.03 0.91 4.98 -27.88 -0.14 0.77 16 18 C -0.52 -14.41 9.11 -34.44 -0.31 -14.73 16 19 H 0.06 1.57 7.74 -52.49 -0.41 1.16 16 20 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 21 N -0.89 -26.72 13.29 55.43 0.74 -25.99 16 22 Si 0.90 21.32 29.54 -169.99 -5.02 16.30 16 23 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 24 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 25 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 26 C -0.05 -0.74 7.16 -39.58 -0.28 -1.03 16 27 C -0.11 -1.69 9.63 -39.58 -0.38 -2.07 16 28 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 29 H 0.06 0.64 8.09 -51.93 -0.42 0.22 16 30 H 0.06 0.72 8.09 -51.93 -0.42 0.30 16 31 H 0.12 1.81 8.06 -52.48 -0.42 1.39 16 32 H 0.12 1.72 6.47 -52.49 -0.34 1.38 16 33 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 34 H 0.07 0.80 6.24 -51.93 -0.32 0.48 16 35 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 36 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 37 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 38 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 39 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 40 H 0.10 1.30 6.67 -51.93 -0.35 0.95 16 41 H 0.12 2.28 4.59 -51.92 -0.24 2.04 16 42 H 0.11 2.11 8.14 -51.92 -0.42 1.68 16 43 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 44 H 0.03 0.90 8.14 -51.93 -0.42 0.48 16 45 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 46 H 0.12 1.48 5.92 -52.49 -0.31 1.17 16 47 H 0.11 1.41 8.06 -52.49 -0.42 0.99 16 LS Contribution 372.91 15.07 5.62 5.62 Total: -1.00 -34.15 372.91 -11.53 -45.68 By element: Atomic # 1 Polarization: 10.81 SS G_CDS: -7.43 Total: 3.38 kcal Atomic # 6 Polarization: -33.80 SS G_CDS: -2.90 Total: -36.70 kcal Atomic # 7 Polarization: -41.02 SS G_CDS: 0.39 Total: -40.63 kcal Atomic # 8 Polarization: -40.50 SS G_CDS: -1.67 Total: -42.17 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.02 Total: 16.30 kcal Atomic # 16 Polarization: 49.04 SS G_CDS: -0.52 Total: 48.52 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -34.15 -11.53 -45.68 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000078904004.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.834 kcal (2) G-P(sol) polarization free energy of solvation -34.148 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.981 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.532 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.679 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.513 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds