Wall clock time and date at job start Tue Mar 31 2020 05:43:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46498 * 109.47155 * 2 1 4 4 C 1.36932 * 119.99823 * 85.70544 * 3 2 1 5 5 H 1.08001 * 120.00038 * 169.54701 * 4 3 2 6 6 C 1.38817 * 120.00345 * 349.53992 * 4 3 2 7 7 N 1.31620 * 119.99624 * 1.03772 * 6 4 3 8 8 Si 1.86800 * 120.00044 * 181.03635 * 6 4 3 9 9 H 1.48498 * 109.46976 * 90.00380 * 8 6 4 10 10 H 1.48504 * 109.46725 * 209.99838 * 8 6 4 11 11 H 1.48494 * 109.47132 * 329.99981 * 8 6 4 12 12 S 1.65600 * 119.99894 * 265.97452 * 3 2 1 13 13 O 1.42099 * 106.40071 * 23.26946 * 12 3 2 14 14 O 1.42099 * 106.39794 * 156.18599 * 12 3 2 15 15 C 1.76195 * 107.22074 * 269.72534 * 12 3 2 16 16 C 1.38262 * 120.00050 * 114.72295 * 15 12 3 17 17 C 1.38210 * 120.00198 * 179.76286 * 16 15 12 18 18 C 1.50700 * 120.00391 * 180.23298 * 17 16 15 19 19 F 1.39900 * 109.47290 * 180.28144 * 18 17 16 20 20 F 1.39900 * 109.47214 * 300.28306 * 18 17 16 21 21 F 1.39898 * 109.46872 * 60.27947 * 18 17 16 22 22 C 1.38260 * 119.99836 * 0.51697 * 17 16 15 23 23 C 1.38213 * 119.99687 * 359.74159 * 22 17 16 24 24 C 1.38214 * 120.00162 * 295.00278 * 15 12 3 25 25 C 1.50702 * 119.99825 * 0.02562 * 24 15 12 26 26 H 1.08997 * 109.47290 * 179.97438 * 1 2 3 27 27 H 1.08997 * 109.47005 * 300.00444 * 1 2 3 28 28 H 1.08998 * 109.46622 * 60.00188 * 1 2 3 29 29 H 1.08997 * 109.47005 * 239.99556 * 2 1 3 30 30 H 1.09003 * 109.47017 * 120.00038 * 2 1 3 31 31 H 0.97001 * 119.99717 * 179.97438 * 7 6 4 32 32 H 1.08007 * 119.99656 * 0.02562 * 16 15 12 33 33 H 1.08004 * 119.99852 * 179.71637 * 22 17 16 34 34 H 1.08008 * 119.99457 * 179.97438 * 23 22 17 35 35 H 1.09003 * 109.46593 * 90.00107 * 25 24 15 36 36 H 1.08999 * 109.46682 * 210.00201 * 25 24 15 37 37 H 1.08994 * 109.46824 * 330.00156 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1629 2.0563 1.1826 5 1 2.6774 3.0056 1.2030 6 6 1.6479 1.5205 2.3551 7 7 1.0387 0.3540 2.3336 8 14 1.8196 2.4551 3.9633 9 1 0.6447 3.3446 4.1468 10 1 1.8916 1.4912 5.0907 11 1 3.0590 3.2724 3.9310 12 16 2.3893 2.1283 -1.4306 13 8 1.6526 1.4512 -2.4396 14 8 2.2802 3.5251 -1.1938 15 6 4.0910 1.8106 -1.7591 16 6 4.4531 1.0480 -2.8540 17 6 5.7881 0.8030 -3.1145 18 6 6.1831 -0.0239 -4.3109 19 9 7.5766 -0.1373 -4.3599 20 9 5.6149 -1.2979 -4.2054 21 9 5.7243 0.5961 -5.4781 22 6 6.7611 1.3115 -2.2741 23 6 6.3988 2.0694 -1.1765 24 6 5.0636 2.3190 -0.9189 25 6 4.6686 3.1445 0.2784 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3633 0.5139 0.8899 28 1 -0.3632 0.5138 -0.8900 29 1 1.8933 -0.5139 -0.8899 30 1 1.8934 -0.5139 0.8900 31 1 0.6792 -0.0205 3.1530 32 1 3.6928 0.6473 -3.5082 33 1 7.8041 1.1162 -2.4750 34 1 7.1589 2.4663 -0.5197 35 1 4.5251 2.4909 1.1389 36 1 5.4554 3.8663 0.4976 37 1 3.7397 3.6731 0.0647 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000078985413.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:43:45 Heat of formation + Delta-G solvation = -169.589202 kcal Electronic energy + Delta-G solvation = -28521.809044 eV Core-core repulsion = 23977.627083 eV Total energy + Delta-G solvation = -4544.181962 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 337.075 amu Computer time = 1.54 seconds Orbital eigenvalues (eV) -50.16517 -47.70411 -47.59908 -39.37523 -36.48064 -36.29095 -34.89894 -33.28578 -31.40064 -31.19988 -29.44310 -28.18870 -24.89379 -24.22885 -23.27472 -21.63394 -21.43578 -19.09035 -18.48082 -18.44453 -18.39191 -17.12957 -16.75953 -15.83662 -15.54389 -15.39665 -14.55356 -14.51681 -14.45703 -14.25019 -14.07386 -14.01919 -13.78678 -13.74966 -13.68309 -13.39529 -12.87862 -12.51708 -12.36742 -12.20801 -12.13607 -11.93631 -11.67061 -11.26770 -11.14730 -11.12193 -10.99189 -10.83898 -10.73631 -10.37082 -10.11610 -9.83906 -9.78574 -9.28403 -9.04047 -8.86932 -8.04401 -6.19424 -3.93478 0.83270 1.11827 1.37264 2.66054 3.13141 3.20056 3.20496 3.31771 3.71304 3.95861 4.02956 4.30274 4.42716 4.58709 4.77417 4.84339 4.98687 5.06010 5.22569 5.45523 5.62926 5.75084 5.84048 6.03697 6.09466 6.13463 6.21842 6.40218 6.60585 6.63512 6.83209 6.85224 6.95094 7.14763 7.34025 7.74844 7.90046 8.39698 8.81532 9.17735 10.63955 Molecular weight = 337.07amu Principal moments of inertia in cm(-1) A = 0.017330 B = 0.004459 C = 0.004122 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1615.286691 B = 6278.410162 C = 6791.869437 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.135 3.865 3 N -0.828 5.828 4 C -0.302 4.302 5 H 0.119 0.881 6 C 0.034 3.966 7 N -0.866 5.866 8 Si 0.921 3.079 9 H -0.276 1.276 10 H -0.284 1.284 11 H -0.269 1.269 12 S 2.632 3.368 13 O -0.978 6.978 14 O -0.965 6.965 15 C -0.682 4.682 16 C 0.025 3.975 17 C -0.224 4.224 18 C 0.512 3.488 19 F -0.181 7.181 20 F -0.176 7.176 21 F -0.178 7.178 22 C -0.033 4.033 23 C -0.152 4.152 24 C 0.063 3.937 25 C -0.184 4.184 26 H 0.035 0.965 27 H 0.090 0.910 28 H 0.021 0.979 29 H 0.025 0.975 30 H 0.117 0.883 31 H 0.265 0.735 32 H 0.146 0.854 33 H 0.137 0.863 34 H 0.137 0.863 35 H 0.111 0.889 36 H 0.072 0.928 37 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.606 -0.304 -4.695 10.697 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.010 3.990 3 N -0.660 5.660 4 C -0.436 4.436 5 H 0.136 0.864 6 C -0.171 4.171 7 N -0.509 5.509 8 Si 0.748 3.252 9 H -0.202 1.202 10 H -0.209 1.209 11 H -0.194 1.194 12 S 2.721 3.279 13 O -0.968 6.968 14 O -0.955 6.955 15 C -0.760 4.760 16 C 0.006 3.994 17 C -0.226 4.226 18 C 0.458 3.542 19 F -0.162 7.162 20 F -0.157 7.157 21 F -0.159 7.159 22 C -0.051 4.051 23 C -0.170 4.170 24 C 0.061 3.939 25 C -0.240 4.240 26 H 0.054 0.946 27 H 0.108 0.892 28 H 0.040 0.960 29 H 0.043 0.957 30 H 0.135 0.865 31 H 0.076 0.924 32 H 0.164 0.836 33 H 0.155 0.845 34 H 0.155 0.845 35 H 0.130 0.870 36 H 0.091 0.909 37 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 9.079 0.029 -5.245 10.485 hybrid contribution 1.062 -0.275 0.599 1.250 sum 10.141 -0.245 -4.646 11.157 Atomic orbital electron populations 1.22147 0.96564 0.99567 1.01416 1.21329 0.94854 0.82145 1.00643 1.53699 1.69023 1.23180 1.20104 1.19918 1.35872 1.02705 0.85078 0.86400 1.25183 0.96473 0.96545 0.98893 1.70181 1.36569 1.16907 1.27206 0.86020 0.79070 0.78971 0.81174 1.20225 1.20917 1.19403 1.05063 0.74992 0.74377 0.73503 1.93457 1.69690 1.75578 1.58053 1.93403 1.86111 1.30787 1.85217 1.32272 1.30163 1.10148 1.03382 1.20650 0.94552 0.90382 0.93866 1.19972 0.96389 1.07639 0.98612 1.18256 0.74252 0.78402 0.83292 1.93138 1.30182 1.96179 1.96716 1.93224 1.84736 1.41562 1.96189 1.93213 1.88702 1.82543 1.51427 1.21092 0.98918 0.92668 0.92429 1.21171 0.96223 1.01293 0.98360 1.19882 0.92330 0.89117 0.92530 1.22222 1.05484 1.00318 0.95967 0.94645 0.89181 0.95991 0.95691 0.86532 0.92378 0.83624 0.84491 0.84518 0.87044 0.90872 0.86375 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 45. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.03 9.51 37.16 0.35 -2.68 16 2 C 0.14 3.01 5.29 -4.04 -0.02 2.99 16 3 N -0.83 -18.68 2.92 -59.91 -0.17 -18.86 16 4 C -0.30 -6.90 7.53 -15.06 -0.11 -7.02 16 5 H 0.12 2.55 4.36 -52.49 -0.23 2.33 16 6 C 0.03 0.78 5.32 -17.43 -0.09 0.68 16 7 N -0.87 -20.26 7.26 55.49 0.40 -19.86 16 8 Si 0.92 18.20 29.55 -169.99 -5.02 13.18 16 9 H -0.28 -5.60 7.11 56.52 0.40 -5.20 16 10 H -0.28 -5.65 7.11 56.52 0.40 -5.24 16 11 H -0.27 -5.10 7.11 56.52 0.40 -4.70 16 12 S 2.63 56.98 5.12 -107.50 -0.55 56.43 16 13 O -0.98 -22.55 15.91 -57.17 -0.91 -23.46 16 14 O -0.97 -22.30 14.60 -57.17 -0.83 -23.13 16 15 C -0.68 -12.79 5.91 -39.58 -0.23 -13.02 16 16 C 0.02 0.43 9.10 -39.58 -0.36 0.07 16 17 C -0.22 -3.42 5.37 -104.62 -0.56 -3.98 16 18 C 0.51 7.21 3.32 36.01 0.12 7.32 16 19 F -0.18 -2.31 15.97 2.25 0.04 -2.28 16 20 F -0.18 -2.58 17.23 2.25 0.04 -2.54 16 21 F -0.18 -2.55 17.24 2.25 0.04 -2.51 16 22 C -0.03 -0.44 9.43 -39.58 -0.37 -0.81 16 23 C -0.15 -2.11 9.70 -39.58 -0.38 -2.49 16 24 C 0.06 1.05 5.87 -104.62 -0.61 0.44 16 25 C -0.18 -3.01 7.82 36.01 0.28 -2.73 16 26 H 0.03 0.70 8.14 -51.93 -0.42 0.27 16 27 H 0.09 2.13 6.01 -51.93 -0.31 1.82 16 28 H 0.02 0.47 8.10 -51.93 -0.42 0.05 16 29 H 0.02 0.52 7.64 -51.93 -0.40 0.12 16 30 H 0.12 2.70 5.83 -51.93 -0.30 2.40 16 31 H 0.26 5.96 8.31 -40.82 -0.34 5.62 16 32 H 0.15 2.48 7.33 -52.48 -0.38 2.09 16 33 H 0.14 1.44 7.16 -52.48 -0.38 1.06 16 34 H 0.14 1.45 8.06 -52.48 -0.42 1.03 16 35 H 0.11 1.85 6.63 -51.93 -0.34 1.51 16 36 H 0.07 0.95 8.09 -51.93 -0.42 0.53 16 37 H 0.12 2.21 3.49 -51.93 -0.18 2.03 16 LS Contribution 320.43 15.07 4.83 4.83 Total: -1.00 -26.19 320.43 -7.50 -33.69 By element: Atomic # 1 Polarization: 9.07 SS G_CDS: -3.35 Total: 5.73 kcal Atomic # 6 Polarization: -19.23 SS G_CDS: -2.00 Total: -21.23 kcal Atomic # 7 Polarization: -38.94 SS G_CDS: 0.23 Total: -38.71 kcal Atomic # 8 Polarization: -44.85 SS G_CDS: -1.74 Total: -46.59 kcal Atomic # 9 Polarization: -7.43 SS G_CDS: 0.11 Total: -7.32 kcal Atomic # 14 Polarization: 18.20 SS G_CDS: -5.02 Total: 13.18 kcal Atomic # 16 Polarization: 56.98 SS G_CDS: -0.55 Total: 56.43 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -26.19 -7.50 -33.69 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000078985413.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -135.903 kcal (2) G-P(sol) polarization free energy of solvation -26.190 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -162.094 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.496 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.686 kcal (6) G-S(sol) free energy of system = (1) + (5) -169.589 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.54 seconds