Wall clock time and date at job start Tue Mar 31 2020 06:09:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.31806 * 120.82768 * 2 1 4 4 C 1.32486 * 121.62766 * 179.97438 * 3 2 1 5 5 C 1.50700 * 118.57545 * 179.97438 * 4 3 2 6 6 N 1.46899 * 109.47275 * 89.99621 * 5 4 3 7 7 C 1.46894 * 111.00429 * 190.00250 * 6 5 4 8 8 C 1.50694 * 109.47392 * 75.88181 * 7 6 5 9 9 H 1.08004 * 119.99949 * 5.12890 * 8 7 6 10 10 C 1.37879 * 120.00578 * 185.13204 * 8 7 6 11 11 N 1.31513 * 120.00159 * 180.02562 * 10 8 7 12 12 Si 1.86800 * 119.99672 * 359.97438 * 10 8 7 13 13 H 1.48500 * 109.46932 * 90.00287 * 12 10 8 14 14 H 1.48495 * 109.47198 * 210.00098 * 12 10 8 15 15 H 1.48503 * 109.47225 * 330.00459 * 12 10 8 16 16 C 1.46903 * 110.99651 * 66.04724 * 6 5 4 17 17 C 1.50692 * 109.47343 * 195.89862 * 16 6 5 18 18 C 1.34520 * 125.78728 * 90.00074 * 17 16 6 19 19 C 1.41385 * 106.83994 * 180.02562 * 18 17 16 20 20 C 1.34517 * 106.83957 * 0.02562 * 19 18 17 21 21 O 1.34299 * 108.41982 * 359.73542 * 20 19 18 22 22 N 1.31153 * 122.85183 * 0.25840 * 4 3 2 23 23 C 1.33853 * 120.25321 * 359.48255 * 22 4 3 24 24 C 1.40269 * 122.04933 * 180.22602 * 23 22 4 25 25 C 1.36213 * 119.58228 * 180.25669 * 24 23 22 26 26 C 1.39353 * 121.09699 * 0.04609 * 25 24 23 27 27 C 1.36222 * 120.96410 * 359.95020 * 26 25 24 28 28 C 1.40272 * 119.47976 * 0.02562 * 27 26 25 29 29 H 1.08997 * 109.47486 * 89.99938 * 1 2 3 30 30 H 1.09003 * 109.47223 * 210.00133 * 1 2 3 31 31 H 1.08996 * 109.47168 * 329.99544 * 1 2 3 32 32 H 1.09009 * 109.46854 * 330.00001 * 5 4 3 33 33 H 1.08996 * 109.47239 * 210.00138 * 5 4 3 34 34 H 1.09001 * 109.47586 * 195.88445 * 7 6 5 35 35 H 1.09007 * 109.47148 * 315.88116 * 7 6 5 36 36 H 0.97003 * 119.99645 * 179.97438 * 11 10 8 37 37 H 1.09006 * 109.47380 * 315.90479 * 16 6 5 38 38 H 1.09005 * 109.47183 * 75.90143 * 16 6 5 39 39 H 1.07997 * 126.58269 * 359.96869 * 18 17 16 40 40 H 1.08003 * 126.57864 * 179.97438 * 19 18 17 41 41 H 1.08004 * 125.78696 * 180.02562 * 20 19 18 42 42 H 1.07993 * 120.21230 * 0.30251 * 24 23 22 43 43 H 1.08002 * 119.45375 * 180.02562 * 25 24 23 44 44 H 1.08003 * 119.51889 * 179.97438 * 26 25 24 45 45 H 1.08004 * 120.25549 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1825 1.1318 0.0000 4 6 3.5072 1.1503 0.0005 5 6 4.2095 2.4837 -0.0001 6 7 4.4371 2.9180 1.3846 7 6 4.9014 4.3108 1.4301 8 6 3.7391 5.2364 1.1787 9 1 2.7404 4.8360 1.0852 10 6 3.9504 6.5943 1.0680 11 7 2.9359 7.4021 0.8491 12 14 5.6776 7.2870 1.2303 13 1 6.3218 7.3290 -0.1070 14 1 5.6095 8.6606 1.7903 15 1 6.4747 6.4219 2.1367 16 6 5.3829 2.0251 2.0676 17 6 5.2993 2.2482 3.5555 18 6 4.4814 1.5990 4.4036 19 6 4.7326 2.1195 5.6939 20 6 5.6884 3.0560 5.5571 21 8 6.0317 3.1258 4.2606 22 7 4.2340 0.0586 -0.0039 23 6 3.6453 -1.1435 0.0012 24 6 4.3856 -2.3349 0.0014 25 6 3.7344 -3.5313 0.0014 26 6 2.3422 -3.5929 0.0002 27 6 1.5903 -2.4570 0.0001 28 6 2.2276 -1.2074 0.0005 29 1 -0.3634 0.0000 -1.0276 30 1 -0.3634 -0.8900 0.5139 31 1 -0.3633 0.8899 0.5139 32 1 3.5915 3.2196 -0.5147 33 1 5.1664 2.3901 -0.5135 34 1 5.3269 4.5202 2.4115 35 1 5.6614 4.4656 0.6641 36 1 3.0846 8.3575 0.7716 37 1 5.1326 0.9887 1.8409 38 1 6.3955 2.2377 1.7247 39 1 3.7690 0.8287 4.1478 40 1 4.2491 1.8227 6.6130 41 1 6.1117 3.6478 6.3553 42 1 5.4651 -2.3039 0.0023 43 1 4.3065 -4.4473 0.0020 44 1 1.8522 -4.5554 -0.0001 45 1 0.5120 -2.5181 -0.0004 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000078993204.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:09:03 Heat of formation + Delta-G solvation = 99.374956 kcal Electronic energy + Delta-G solvation = -28691.827403 eV Core-core repulsion = 24869.680332 eV Total energy + Delta-G solvation = -3822.147071 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 337.153 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -42.09747 -41.40308 -38.10664 -36.71090 -34.86590 -32.67318 -32.43213 -31.90890 -30.84411 -30.16448 -28.81083 -27.94405 -26.59316 -24.19358 -24.01671 -22.47820 -21.50831 -21.27834 -20.67275 -19.74394 -18.48168 -17.90583 -17.01261 -16.68052 -16.22504 -15.74766 -15.51262 -14.98146 -14.68911 -14.53441 -14.44241 -14.22022 -13.75835 -13.72836 -13.18776 -13.00051 -12.60864 -12.44367 -12.43204 -12.38397 -12.33763 -12.13204 -11.95903 -11.91288 -11.70256 -11.48724 -11.22952 -10.74432 -10.67604 -10.59764 -10.25480 -9.83690 -9.48108 -9.33142 -9.22610 -9.05408 -8.51710 -8.41726 -8.04537 -7.52601 -5.99158 -3.95955 0.17550 0.69770 1.81375 2.16949 2.88073 3.04576 3.31801 3.39793 3.44446 3.44938 3.92622 4.05953 4.09383 4.26871 4.47331 4.50712 4.65736 4.88419 4.90736 5.04863 5.12010 5.21183 5.26516 5.32158 5.38838 5.42437 5.43750 5.53388 5.65804 5.71484 5.75724 5.87610 5.91548 5.96706 6.00120 6.16652 6.19061 6.28267 6.32926 6.44322 6.51875 6.61554 6.78616 6.85594 6.93305 7.17875 7.57832 7.62441 7.77857 7.88612 8.32655 8.68644 9.14266 9.62526 11.13891 Molecular weight = 337.15amu Principal moments of inertia in cm(-1) A = 0.011052 B = 0.003848 C = 0.003254 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2532.810946 B = 7274.854008 C = 8601.941056 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C 0.220 3.780 3 N -0.496 5.496 4 C 0.355 3.645 5 C 0.126 3.874 6 N -0.512 5.512 7 C 0.163 3.837 8 C -0.505 4.505 9 H 0.085 0.915 10 C 0.071 3.929 11 N -0.899 5.899 12 Si 0.868 3.132 13 H -0.277 1.277 14 H -0.286 1.286 15 H -0.266 1.266 16 C 0.122 3.878 17 C 0.020 3.980 18 C -0.204 4.204 19 C -0.215 4.215 20 C -0.049 4.049 21 O -0.173 6.173 22 N -0.516 5.516 23 C 0.165 3.835 24 C -0.103 4.103 25 C -0.085 4.085 26 C -0.132 4.132 27 C -0.072 4.072 28 C -0.172 4.172 29 H 0.089 0.911 30 H 0.080 0.920 31 H 0.092 0.908 32 H 0.120 0.880 33 H 0.055 0.945 34 H 0.036 0.964 35 H -0.009 1.009 36 H 0.263 0.737 37 H 0.101 0.899 38 H 0.045 0.955 39 H 0.137 0.863 40 H 0.142 0.858 41 H 0.197 0.803 42 H 0.137 0.863 43 H 0.130 0.870 44 H 0.128 0.872 45 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.220 -22.345 0.642 22.355 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.060 3.940 3 N -0.209 5.209 4 C 0.087 3.913 5 C -0.003 4.003 6 N -0.237 5.237 7 C 0.037 3.963 8 C -0.543 4.543 9 H 0.103 0.897 10 C -0.131 4.131 11 N -0.538 5.538 12 Si 0.695 3.305 13 H -0.203 1.203 14 H -0.212 1.212 15 H -0.191 1.191 16 C -0.006 4.006 17 C -0.031 4.031 18 C -0.224 4.224 19 C -0.234 4.234 20 C -0.117 4.117 21 O -0.069 6.069 22 N -0.232 5.232 23 C 0.037 3.963 24 C -0.122 4.122 25 C -0.106 4.106 26 C -0.150 4.150 27 C -0.093 4.093 28 C -0.176 4.176 29 H 0.107 0.893 30 H 0.099 0.901 31 H 0.111 0.889 32 H 0.138 0.862 33 H 0.073 0.927 34 H 0.054 0.946 35 H 0.009 0.991 36 H 0.073 0.927 37 H 0.119 0.881 38 H 0.063 0.937 39 H 0.155 0.845 40 H 0.160 0.840 41 H 0.213 0.787 42 H 0.155 0.845 43 H 0.148 0.852 44 H 0.146 0.854 45 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 0.149 -21.083 0.717 21.096 hybrid contribution 1.039 -0.326 -0.025 1.089 sum 1.188 -21.409 0.692 21.454 Atomic orbital electron populations 1.20852 0.87564 1.04494 1.03899 1.22218 0.97406 0.87137 0.87261 1.68130 1.09717 1.29571 1.13502 1.23340 0.86163 0.94409 0.87408 1.20845 0.98518 0.89426 0.91551 1.61903 1.45103 1.03884 1.12796 1.20306 0.96063 0.83413 0.96483 1.21021 0.94840 0.90221 1.48264 0.89651 1.24854 0.96386 0.96909 0.94922 1.69893 1.30267 1.03697 1.49908 0.86970 0.85950 0.78783 0.78799 1.20266 1.21165 1.19057 1.20669 0.95996 0.98898 0.85019 1.22300 0.94797 0.91774 0.94221 1.21360 1.03198 1.05287 0.92528 1.21707 1.01975 1.01118 0.98601 1.23878 1.01251 1.02456 0.84076 1.84047 1.53328 1.50696 1.18793 1.68671 1.40090 0.97796 1.16632 1.18996 0.89883 0.92710 0.94738 1.20754 1.00499 0.90064 1.00895 1.20992 0.94647 0.97813 0.97185 1.20925 0.93991 0.98635 1.01459 1.20977 1.00170 0.90888 0.97228 1.19421 0.95344 0.95811 1.07043 0.89268 0.90121 0.88935 0.86245 0.92739 0.94587 0.99084 0.92747 0.88126 0.93658 0.84480 0.84013 0.78673 0.84490 0.85206 0.85431 0.84789 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.10 9.80 36.01 0.35 -0.75 16 2 C 0.22 3.14 6.90 -81.71 -0.56 2.57 16 3 N -0.50 -8.94 10.22 -6.60 -0.07 -9.01 16 4 C 0.35 6.52 6.47 -157.14 -1.02 5.51 16 5 C 0.13 2.50 5.19 -4.98 -0.03 2.48 16 6 N -0.51 -11.19 4.36 -238.96 -1.04 -12.23 16 7 C 0.16 4.06 3.65 -4.98 -0.02 4.04 16 8 C -0.51 -14.58 9.12 -34.44 -0.31 -14.89 16 9 H 0.09 2.71 8.06 -52.48 -0.42 2.29 16 10 C 0.07 2.08 5.47 -17.82 -0.10 1.98 16 11 N -0.90 -27.82 13.96 55.43 0.77 -27.05 16 12 Si 0.87 21.88 27.37 -169.99 -4.65 17.23 16 13 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 14 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 15 H -0.27 -6.57 6.69 56.52 0.38 -6.19 16 16 C 0.12 2.35 5.36 -4.98 -0.03 2.32 16 17 C 0.02 0.39 6.12 -35.63 -0.22 0.17 16 18 C -0.20 -3.69 10.81 -39.70 -0.43 -4.12 16 19 C -0.21 -3.44 10.91 -39.70 -0.43 -3.87 16 20 C -0.05 -0.78 12.09 29.42 0.36 -0.43 16 21 O -0.17 -3.41 9.79 5.73 0.06 -3.35 16 22 N -0.52 -8.67 8.84 -8.74 -0.08 -8.75 16 23 C 0.17 2.39 6.62 -84.82 -0.56 1.83 16 24 C -0.10 -1.17 10.01 -39.55 -0.40 -1.57 16 25 C -0.09 -0.73 9.94 -39.90 -0.40 -1.12 16 26 C -0.13 -1.06 9.95 -39.89 -0.40 -1.45 16 27 C -0.07 -0.68 9.34 -39.54 -0.37 -1.05 16 28 C -0.17 -2.25 5.74 -106.83 -0.61 -2.86 16 29 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 30 H 0.08 0.57 6.58 -51.93 -0.34 0.23 16 31 H 0.09 1.01 8.14 -51.93 -0.42 0.59 16 32 H 0.12 2.59 7.44 -51.92 -0.39 2.21 16 33 H 0.05 1.00 8.12 -51.93 -0.42 0.58 16 34 H 0.04 0.94 5.87 -51.93 -0.30 0.64 16 35 H -0.01 -0.21 7.14 -51.92 -0.37 -0.58 16 36 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 37 H 0.10 1.83 5.81 -51.93 -0.30 1.53 16 38 H 0.05 0.84 8.05 -51.93 -0.42 0.42 16 39 H 0.14 2.34 8.06 -52.49 -0.42 1.92 16 40 H 0.14 1.84 8.06 -52.48 -0.42 1.42 16 41 H 0.20 2.31 8.06 -52.48 -0.42 1.88 16 42 H 0.14 1.39 8.06 -52.49 -0.42 0.97 16 43 H 0.13 0.73 8.06 -52.49 -0.42 0.31 16 44 H 0.13 0.65 8.06 -52.48 -0.42 0.23 16 45 H 0.13 0.87 6.54 -52.48 -0.34 0.53 16 LS Contribution 375.49 15.07 5.66 5.66 Total: -1.00 -34.93 375.49 -10.37 -45.30 By element: Atomic # 1 Polarization: 9.27 SS G_CDS: -5.85 Total: 3.42 kcal Atomic # 6 Polarization: -6.05 SS G_CDS: -5.17 Total: -11.22 kcal Atomic # 7 Polarization: -56.62 SS G_CDS: -0.41 Total: -57.04 kcal Atomic # 8 Polarization: -3.41 SS G_CDS: 0.06 Total: -3.35 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -4.65 Total: 17.23 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -34.93 -10.37 -45.30 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000078993204.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 144.671 kcal (2) G-P(sol) polarization free energy of solvation -34.926 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 109.746 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.371 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.296 kcal (6) G-S(sol) free energy of system = (1) + (5) 99.375 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds