Wall clock time and date at job start Tue Mar 31 2020 06:02:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38236 * 119.99562 * 2 1 4 4 C 1.38238 * 119.99819 * 180.02562 * 3 2 1 5 5 C 1.50700 * 120.00099 * 179.97438 * 4 3 2 6 6 C 1.38237 * 119.99938 * 359.95495 * 4 3 2 7 7 C 1.38227 * 120.00277 * 0.02562 * 6 4 3 8 8 C 1.50699 * 120.00410 * 179.97438 * 7 6 4 9 9 H 1.08997 * 109.99743 * 341.09314 * 8 7 6 10 10 C 1.54312 * 109.77516 * 102.25141 * 8 7 6 11 11 C 1.55152 * 102.86416 * 141.88941 * 10 8 7 12 12 C 1.54915 * 101.58279 * 324.30030 * 11 10 8 13 13 N 1.47030 * 109.88055 * 220.00084 * 8 7 6 14 14 S 1.65594 * 125.64945 * 61.67544 * 13 8 7 15 15 O 1.42102 * 104.27534 * 153.64375 * 14 13 8 16 16 O 1.42108 * 104.27870 * 25.78820 * 14 13 8 17 17 C 1.81391 * 104.45143 * 269.71532 * 14 13 8 18 18 C 1.53004 * 109.47414 * 179.97438 * 17 14 13 19 19 C 1.50700 * 109.47208 * 179.97438 * 18 17 14 20 20 H 1.08002 * 119.99770 * 0.02562 * 19 18 17 21 21 C 1.37871 * 120.00083 * 180.02562 * 19 18 17 22 22 N 1.31514 * 120.00147 * 0.02562 * 21 19 18 23 23 Si 1.86803 * 120.00278 * 180.02562 * 21 19 18 24 24 H 1.48500 * 109.46986 * 270.00126 * 23 21 19 25 25 H 1.48496 * 109.47029 * 30.00143 * 23 21 19 26 26 H 1.48499 * 109.47352 * 149.99973 * 23 21 19 27 27 C 1.38238 * 119.99947 * 0.25400 * 7 6 4 28 28 H 1.09007 * 109.46608 * 90.00649 * 1 2 3 29 29 H 1.09002 * 109.46989 * 210.00206 * 1 2 3 30 30 H 1.08993 * 109.47087 * 330.00484 * 1 2 3 31 31 H 1.08000 * 120.00589 * 359.97438 * 3 2 1 32 32 H 1.09000 * 109.47431 * 269.98143 * 5 4 3 33 33 H 1.09000 * 109.47222 * 29.98334 * 5 4 3 34 34 H 1.08997 * 109.47028 * 149.97407 * 5 4 3 35 35 H 1.08000 * 119.99503 * 179.97438 * 6 4 3 36 36 H 1.08993 * 110.92587 * 23.47176 * 10 8 7 37 37 H 1.09006 * 110.73927 * 260.21101 * 10 8 7 38 38 H 1.09000 * 111.00459 * 206.22884 * 11 10 8 39 39 H 1.08996 * 111.01038 * 82.37164 * 11 10 8 40 40 H 1.09004 * 110.36559 * 278.17786 * 12 11 10 41 41 H 1.08999 * 110.46308 * 155.89701 * 12 11 10 42 42 H 1.09000 * 109.47478 * 59.99882 * 17 14 13 43 43 H 1.08998 * 109.47401 * 300.00003 * 17 14 13 44 44 H 1.08994 * 109.47074 * 60.00211 * 18 17 14 45 45 H 1.08998 * 109.47285 * 300.00046 * 18 17 14 46 46 H 0.97005 * 119.99661 * 359.97438 * 22 21 19 47 47 H 1.08002 * 120.00555 * 179.72115 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1981 1.1972 0.0000 4 6 3.5805 1.1973 -0.0005 5 6 4.3340 2.5024 -0.0011 6 6 4.2717 0.0001 -0.0001 7 6 3.5807 -1.1970 0.0003 8 6 4.3342 -2.5021 0.0001 9 1 5.3596 -2.3404 -0.3322 10 6 4.3289 -3.1081 1.4193 11 6 4.1715 -4.6272 1.1456 12 6 3.2348 -4.6255 -0.0883 13 7 3.6666 -3.4648 -0.8883 14 16 3.4431 -3.2793 -2.5185 15 8 3.3616 -4.6085 -3.0145 16 8 4.4939 -2.4108 -2.9198 17 6 1.8383 -2.4464 -2.6636 18 6 1.5152 -2.2154 -4.1412 19 6 0.1816 -1.5240 -4.2617 20 1 -0.3792 -1.2738 -3.3732 21 6 -0.3226 -1.2107 -5.5061 22 7 0.3601 -1.5157 -6.5880 23 14 -1.9753 -0.3529 -5.6555 24 1 -3.0539 -1.3694 -5.7486 25 1 -2.2003 0.4996 -4.4606 26 1 -1.9855 0.4929 -6.8760 27 6 2.1983 -1.1971 -0.0050 28 1 -0.3633 -0.0001 -1.0278 29 1 -0.3633 -0.8900 0.5139 30 1 -0.3633 0.8900 0.5137 31 1 1.6581 2.1325 -0.0004 32 1 4.5155 2.8167 -1.0289 33 1 3.7449 3.2622 0.5125 34 1 5.2863 2.3723 0.5128 35 1 5.3517 0.0003 -0.0010 36 1 3.4871 -2.7316 2.0002 37 1 5.2702 -2.9039 1.9297 38 1 3.7025 -5.1300 1.9913 39 1 5.1322 -5.0828 0.9060 40 1 2.1971 -4.5064 0.2233 41 1 3.3554 -5.5459 -0.6596 42 1 1.8785 -1.4875 -2.1467 43 1 1.0640 -3.0687 -2.2150 44 1 1.4750 -3.1740 -4.6584 45 1 2.2895 -1.5929 -4.5895 46 1 1.2185 -1.9608 -6.5104 47 1 1.6583 -2.1324 -0.0093 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000079311853.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:02:18 Heat of formation + Delta-G solvation = -68.117214 kcal Electronic energy + Delta-G solvation = -28724.243237 eV Core-core repulsion = 24997.984361 eV Total energy + Delta-G solvation = -3726.258877 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 337.150 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.09243 -38.11005 -36.65230 -35.48636 -34.26273 -33.44981 -32.59789 -31.02291 -30.92426 -28.43598 -27.08866 -26.66670 -25.00163 -23.20925 -21.91576 -21.59816 -20.68014 -20.50490 -18.37256 -17.67744 -16.69843 -16.66008 -16.09450 -15.69117 -15.42573 -15.14322 -14.40180 -14.09717 -13.83471 -13.76173 -13.56272 -13.35502 -13.28109 -13.07560 -12.94177 -12.79343 -12.63182 -12.49147 -12.19757 -12.02524 -11.84020 -11.70276 -11.60584 -11.49494 -11.34946 -11.25076 -11.06137 -10.97340 -10.82992 -10.74163 -10.46228 -10.44553 -10.29656 -10.08898 -9.07757 -8.62129 -8.48492 -8.44828 -8.37443 -6.44712 -4.16695 0.69213 1.36663 1.45855 2.99361 3.37958 3.41669 3.57168 3.74853 4.23406 4.26037 4.47731 4.49928 4.57042 4.79248 4.83953 4.87692 4.91253 5.16236 5.24422 5.30927 5.35105 5.35462 5.44067 5.47454 5.55083 5.59470 5.61581 5.63815 5.66819 5.68913 5.71488 5.78635 5.80310 5.86685 5.98774 6.02880 6.10248 6.19751 6.32054 6.40945 6.46113 6.61436 6.65188 6.72608 7.00895 7.09067 7.11262 8.00272 8.33218 8.75519 9.55320 10.95029 Molecular weight = 337.15amu Principal moments of inertia in cm(-1) A = 0.009793 B = 0.005251 C = 0.004053 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2858.604879 B = 5331.144715 C = 6906.151388 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.073 4.073 3 C -0.117 4.117 4 C -0.083 4.083 5 C -0.113 4.113 6 C -0.108 4.108 7 C -0.107 4.107 8 C 0.195 3.805 9 H 0.087 0.913 10 C -0.117 4.117 11 C -0.128 4.128 12 C 0.113 3.887 13 N -1.011 6.011 14 S 2.600 3.400 15 O -0.965 6.965 16 O -0.959 6.959 17 C -0.587 4.587 18 C 0.018 3.982 19 C -0.592 4.592 20 H 0.055 0.945 21 C 0.016 3.984 22 N -0.907 5.907 23 Si 1.074 2.926 24 H -0.286 1.286 25 H -0.288 1.288 26 H -0.283 1.283 27 C -0.116 4.116 28 H 0.082 0.918 29 H 0.064 0.936 30 H 0.064 0.936 31 H 0.121 0.879 32 H 0.072 0.928 33 H 0.064 0.936 34 H 0.064 0.936 35 H 0.122 0.878 36 H 0.079 0.921 37 H 0.080 0.920 38 H 0.082 0.918 39 H 0.076 0.924 40 H 0.065 0.935 41 H 0.084 0.916 42 H 0.130 0.870 43 H 0.118 0.882 44 H 0.021 0.979 45 H 0.022 0.978 46 H 0.270 0.730 47 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.243 1.046 20.635 21.584 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.073 4.073 3 C -0.135 4.135 4 C -0.083 4.083 5 C -0.170 4.170 6 C -0.126 4.126 7 C -0.108 4.108 8 C 0.089 3.911 9 H 0.105 0.895 10 C -0.156 4.156 11 C -0.167 4.167 12 C -0.012 4.012 13 N -0.847 5.847 14 S 2.700 3.300 15 O -0.956 6.956 16 O -0.949 6.949 17 C -0.720 4.720 18 C -0.021 4.021 19 C -0.632 4.632 20 H 0.073 0.927 21 C -0.189 4.189 22 N -0.543 5.543 23 Si 0.901 3.099 24 H -0.213 1.213 25 H -0.214 1.214 26 H -0.208 1.208 27 C -0.135 4.135 28 H 0.101 0.899 29 H 0.083 0.917 30 H 0.083 0.917 31 H 0.139 0.861 32 H 0.090 0.910 33 H 0.083 0.917 34 H 0.083 0.917 35 H 0.140 0.860 36 H 0.098 0.902 37 H 0.099 0.901 38 H 0.100 0.900 39 H 0.095 0.905 40 H 0.083 0.917 41 H 0.102 0.898 42 H 0.148 0.852 43 H 0.136 0.864 44 H 0.040 0.960 45 H 0.040 0.960 46 H 0.081 0.919 47 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 5.800 1.334 18.788 19.709 hybrid contribution 0.492 -0.345 1.312 1.443 sum 6.292 0.988 20.100 21.085 Atomic orbital electron populations 1.20859 0.90964 1.02254 1.03524 1.19895 0.96269 0.92877 0.98294 1.20929 0.93486 0.97631 1.01460 1.19849 0.93813 0.95189 0.99470 1.20778 0.99611 0.94010 1.02555 1.20793 0.99625 0.91195 1.01004 1.20200 0.94100 0.94901 1.01634 1.20132 0.95319 0.85192 0.90487 0.89464 1.22681 1.03088 0.95084 0.94771 1.22764 1.00271 0.96179 0.97451 1.22038 0.97984 0.88883 0.92317 1.58963 1.72619 1.27404 1.25688 1.05399 0.78344 0.75014 0.71207 1.93528 1.88244 1.36514 1.77308 1.93532 1.53231 1.68468 1.79680 1.30603 1.18664 1.13099 1.09667 1.19042 0.99633 0.97768 0.85666 1.21810 1.03708 1.42501 0.95175 0.92669 1.25927 1.04418 0.96485 0.92040 1.70744 1.14871 1.38303 1.30362 0.83480 0.74328 0.76332 0.75729 1.21293 1.21370 1.20809 1.20890 0.93425 0.97946 1.01207 0.89901 0.91690 0.91748 0.86128 0.90967 0.91698 0.91670 0.85995 0.90245 0.90124 0.89990 0.90549 0.91717 0.89756 0.85201 0.86365 0.96045 0.96004 0.91935 0.85892 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.52 10.01 36.01 0.36 -1.16 16 2 C -0.07 -1.03 5.64 -104.62 -0.59 -1.62 16 3 C -0.12 -1.57 9.36 -39.58 -0.37 -1.94 16 4 C -0.08 -1.08 5.88 -104.62 -0.62 -1.69 16 5 C -0.11 -1.13 10.01 36.01 0.36 -0.77 16 6 C -0.11 -1.44 9.33 -39.59 -0.37 -1.81 16 7 C -0.11 -1.47 4.56 -104.63 -0.48 -1.95 16 8 C 0.20 2.49 2.94 -68.11 -0.20 2.28 16 9 H 0.09 1.13 8.02 -51.93 -0.42 0.71 16 10 C -0.12 -1.06 6.45 -24.91 -0.16 -1.22 16 11 C -0.13 -1.09 7.08 -24.58 -0.17 -1.27 16 12 C 0.11 1.30 7.08 -2.52 -0.02 1.28 16 13 N -1.01 -14.85 2.59 -105.63 -0.27 -15.12 16 14 S 2.60 51.10 5.35 -107.50 -0.58 50.53 16 15 O -0.97 -21.19 17.28 -57.54 -0.99 -22.19 16 16 O -0.96 -21.32 17.60 -57.54 -1.01 -22.34 16 17 C -0.59 -12.13 4.92 37.16 0.18 -11.95 16 18 C 0.02 0.47 4.29 -27.88 -0.12 0.35 16 19 C -0.59 -16.64 9.11 -34.44 -0.31 -16.96 16 20 H 0.06 1.48 7.74 -52.49 -0.41 1.07 16 21 C 0.02 0.46 5.46 -17.82 -0.10 0.36 16 22 N -0.91 -28.02 13.65 55.43 0.76 -27.26 16 23 Si 1.07 25.01 29.90 -169.99 -5.08 19.93 16 24 H -0.29 -6.40 7.11 56.52 0.40 -6.00 16 25 H -0.29 -6.26 7.11 56.52 0.40 -5.85 16 26 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 27 C -0.12 -1.64 5.67 -39.58 -0.22 -1.86 16 28 H 0.08 1.23 8.14 -51.93 -0.42 0.81 16 29 H 0.06 0.73 8.09 -51.93 -0.42 0.31 16 30 H 0.06 0.69 8.08 -51.93 -0.42 0.27 16 31 H 0.12 1.40 8.06 -52.49 -0.42 0.98 16 32 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 33 H 0.06 0.56 8.09 -51.93 -0.42 0.14 16 34 H 0.06 0.56 8.09 -51.93 -0.42 0.14 16 35 H 0.12 1.41 8.04 -52.49 -0.42 0.98 16 36 H 0.08 0.69 7.78 -51.93 -0.40 0.29 16 37 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 38 H 0.08 0.53 8.14 -51.93 -0.42 0.10 16 39 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 40 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 41 H 0.08 1.01 7.66 -51.93 -0.40 0.62 16 42 H 0.13 2.59 5.19 -51.92 -0.27 2.32 16 43 H 0.12 2.19 8.14 -51.92 -0.42 1.77 16 44 H 0.02 0.58 8.01 -51.93 -0.42 0.17 16 45 H 0.02 0.60 8.01 -51.93 -0.42 0.19 16 46 H 0.27 8.38 7.22 -40.82 -0.29 8.09 16 47 H 0.12 1.62 7.29 -52.49 -0.38 1.24 16 LS Contribution 387.84 15.07 5.84 5.84 Total: -1.00 -35.59 387.84 -11.85 -47.44 By element: Atomic # 1 Polarization: 10.78 SS G_CDS: -7.68 Total: 3.10 kcal Atomic # 6 Polarization: -37.10 SS G_CDS: -2.83 Total: -39.92 kcal Atomic # 7 Polarization: -42.87 SS G_CDS: 0.48 Total: -42.38 kcal Atomic # 8 Polarization: -42.52 SS G_CDS: -2.01 Total: -44.52 kcal Atomic # 14 Polarization: 25.01 SS G_CDS: -5.08 Total: 19.93 kcal Atomic # 16 Polarization: 51.10 SS G_CDS: -0.58 Total: 50.53 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -35.59 -11.85 -47.44 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000079311853.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.677 kcal (2) G-P(sol) polarization free energy of solvation -35.593 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.271 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.847 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.440 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.117 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds