Wall clock time and date at job start Tue Mar 31 2020 05:42:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86804 * 119.99480 * 2 1 4 4 H 1.48498 * 109.47085 * 269.99367 * 3 2 1 5 5 H 1.48489 * 109.47453 * 29.99708 * 3 2 1 6 6 H 1.48500 * 109.46873 * 149.99855 * 3 2 1 7 7 C 1.37877 * 120.00108 * 179.97438 * 2 1 3 8 8 H 1.07993 * 120.00304 * 359.97438 * 7 2 1 9 9 C 1.50702 * 119.99780 * 180.02562 * 7 2 1 10 10 N 1.46497 * 109.46964 * 179.97438 * 9 7 2 11 11 C 1.46498 * 120.00051 * 71.43365 * 10 9 7 12 12 C 1.50704 * 109.47053 * 264.34138 * 11 10 9 13 13 C 1.34518 * 125.78690 * 89.99398 * 12 11 10 14 14 C 1.41384 * 106.83710 * 179.79569 * 13 12 11 15 15 C 1.34515 * 106.83906 * 0.37314 * 14 13 12 16 16 O 1.34298 * 125.78808 * 270.02469 * 12 11 10 17 17 C 1.34774 * 119.99965 * 251.42790 * 10 9 7 18 18 O 1.21576 * 119.99889 * 181.47332 * 17 10 9 19 19 C 1.47631 * 120.00215 * 1.47747 * 17 10 9 20 20 C 1.39694 * 120.15314 * 31.55925 * 19 17 10 21 21 C 1.37793 * 119.89028 * 179.74887 * 20 19 17 22 22 C 1.38611 * 120.20842 * 0.53521 * 21 20 19 23 23 Cl 1.73595 * 119.84842 * 179.76666 * 22 21 20 24 24 C 1.38353 * 120.30613 * 359.73906 * 22 21 20 25 25 C 1.38255 * 120.10607 * 359.97438 * 24 22 21 26 26 F 1.35107 * 120.10132 * 179.97438 * 25 24 22 27 27 H 0.97000 * 120.00160 * 0.02562 * 1 2 3 28 28 H 1.09005 * 109.47199 * 59.99783 * 9 7 2 29 29 H 1.09003 * 109.46909 * 300.00115 * 9 7 2 30 30 H 1.08999 * 109.47362 * 144.34119 * 11 10 9 31 31 H 1.08999 * 109.47279 * 24.33878 * 11 10 9 32 32 H 1.08000 * 126.58149 * 0.02562 * 13 12 11 33 33 H 1.08001 * 126.57917 * 180.24131 * 14 13 12 34 34 H 1.08006 * 125.78841 * 179.88458 * 15 14 13 35 35 H 1.08004 * 120.05671 * 0.02611 * 20 19 17 36 36 H 1.08006 * 119.89826 * 180.25802 * 21 20 19 37 37 H 1.08003 * 119.94882 * 180.02562 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6179 0.0000 4 1 2.4967 2.0465 -1.4001 5 1 1.4465 2.6527 0.6999 6 1 3.5466 1.4404 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 1.4647 -2.1293 0.0014 9 6 3.5116 -1.1939 0.0011 10 7 4.0000 -2.5751 0.0022 11 6 3.8638 -3.4012 -1.1999 12 6 2.6147 -4.2379 -1.0956 13 6 1.3902 -3.8799 -1.5223 14 6 0.5237 -4.9586 -1.2317 15 6 1.2688 -5.9078 -0.6373 16 8 2.5352 -5.4670 -0.5605 17 6 4.5747 -3.0858 1.1092 18 8 5.0041 -4.2231 1.1017 19 6 4.6827 -2.2641 2.3310 20 6 3.7080 -1.3062 2.6208 21 6 3.8115 -0.5459 3.7653 22 6 4.8853 -0.7208 4.6241 23 17 5.0094 0.2464 6.0603 24 6 5.8583 -1.6631 4.3424 25 6 5.7642 -2.4371 3.2006 26 9 6.7148 -3.3569 2.9253 27 1 -0.4850 0.8400 -0.0004 28 1 3.8746 -0.6798 0.8911 29 1 3.8752 -0.6803 -0.8889 30 1 4.7317 -4.0541 -1.2925 31 1 3.7979 -2.7578 -2.0773 32 1 1.1215 -2.9488 -1.9991 33 1 -0.5340 -5.0097 -1.4440 34 1 0.9104 -6.8640 -0.2857 35 1 2.8725 -1.1649 1.9512 36 1 3.0558 0.1919 3.9916 37 1 6.6924 -1.7949 5.0158 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000079333494.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:42:13 Heat of formation + Delta-G solvation = -16.304515 kcal Electronic energy + Delta-G solvation = -27100.063543 eV Core-core repulsion = 22978.881233 eV Total energy + Delta-G solvation = -4121.182310 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 337.067 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -48.75861 -41.92955 -39.97686 -38.20844 -36.46039 -35.58688 -32.84487 -32.38569 -31.64207 -30.48206 -29.76253 -28.20741 -25.72471 -23.55599 -22.72148 -22.43996 -21.11677 -20.25542 -19.22916 -17.52586 -17.43506 -17.02668 -16.66415 -16.40598 -15.77609 -15.49421 -15.25389 -14.96932 -14.75372 -14.38409 -14.02023 -13.71131 -13.43458 -13.25438 -13.13447 -12.71949 -12.50384 -12.22603 -12.18330 -12.02570 -11.91295 -11.42869 -11.30059 -11.24988 -11.11328 -11.02420 -10.59411 -10.29625 -9.86365 -9.48447 -9.14570 -8.99481 -8.71946 -8.64766 -8.16332 -7.76395 -6.38430 -4.43410 0.73907 1.19330 1.94112 2.24866 2.97918 3.05487 3.13172 3.17443 3.20429 3.58392 3.66819 3.83711 4.10696 4.28843 4.75544 4.83405 4.90384 5.00400 5.23821 5.26606 5.46920 5.61782 5.65161 5.79216 5.89573 5.91415 6.05066 6.19120 6.28919 6.40928 6.42365 6.50774 6.63416 6.68551 6.79913 6.98697 7.15961 7.25533 7.73832 7.86877 8.22394 8.59005 8.77359 9.17854 10.71174 Molecular weight = 337.07amu Principal moments of inertia in cm(-1) A = 0.009950 B = 0.005359 C = 0.003945 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2813.270140 B = 5223.884425 C = 7096.207017 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.875 5.875 2 C 0.085 3.915 3 Si 0.856 3.144 4 H -0.271 1.271 5 H -0.280 1.280 6 H -0.260 1.260 7 C -0.556 4.556 8 H 0.101 0.899 9 C 0.181 3.819 10 N -0.579 5.579 11 C 0.209 3.791 12 C -0.031 4.031 13 C -0.165 4.165 14 C -0.215 4.215 15 C -0.056 4.056 16 O -0.170 6.170 17 C 0.559 3.441 18 O -0.537 6.537 19 C -0.163 4.163 20 C -0.047 4.047 21 C -0.137 4.137 22 C 0.012 3.988 23 Cl -0.064 7.064 24 C -0.172 4.172 25 C 0.162 3.838 26 F -0.118 7.118 27 H 0.269 0.731 28 H 0.056 0.944 29 H 0.030 0.970 30 H 0.086 0.914 31 H 0.110 0.890 32 H 0.156 0.844 33 H 0.141 0.859 34 H 0.193 0.807 35 H 0.200 0.800 36 H 0.145 0.855 37 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.458 -1.309 3.665 7.540 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.510 5.510 2 C -0.121 4.121 3 Si 0.682 3.318 4 H -0.196 1.196 5 H -0.205 1.205 6 H -0.184 1.184 7 C -0.594 4.594 8 H 0.118 0.882 9 C 0.061 3.939 10 N -0.309 5.309 11 C 0.086 3.914 12 C -0.082 4.082 13 C -0.185 4.185 14 C -0.234 4.234 15 C -0.124 4.124 16 O -0.065 6.065 17 C 0.346 3.654 18 O -0.416 6.416 19 C -0.167 4.167 20 C -0.065 4.065 21 C -0.156 4.156 22 C -0.015 4.015 23 Cl -0.035 7.035 24 C -0.191 4.191 25 C 0.141 3.859 26 F -0.096 7.096 27 H 0.079 0.921 28 H 0.073 0.927 29 H 0.047 0.953 30 H 0.105 0.895 31 H 0.128 0.872 32 H 0.174 0.826 33 H 0.159 0.841 34 H 0.210 0.790 35 H 0.216 0.784 36 H 0.162 0.838 37 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges 6.821 -1.869 3.874 8.064 hybrid contribution 0.019 1.103 0.154 1.114 sum 6.840 -0.766 4.028 7.974 Atomic orbital electron populations 1.69877 1.06130 1.27474 1.47558 1.24885 0.94687 0.98596 0.93908 0.87143 0.80828 0.84399 0.79448 1.19638 1.20549 1.18413 1.21596 0.88650 0.96142 1.52982 0.88159 1.20642 0.96523 0.77948 0.98794 1.47832 1.57105 1.14731 1.11271 1.19587 0.92137 0.91375 0.88291 1.22738 0.98456 0.84861 1.02172 1.21721 0.91623 1.00154 1.04990 1.21810 1.00743 0.95062 1.05809 1.23872 0.82052 1.00922 1.05597 1.84053 1.29699 1.29504 1.63292 1.17936 0.78334 0.86172 0.82911 1.90781 1.49177 1.18084 1.83543 1.20196 0.97231 1.01570 0.97675 1.22854 0.99016 0.89225 0.95371 1.21196 0.97924 1.02331 0.94137 1.20853 0.96352 0.94517 0.89794 1.98371 1.97895 1.70006 1.37211 1.20745 1.01676 0.98417 0.98280 1.17419 0.86634 0.88290 0.93569 1.91567 1.61532 1.63207 1.93300 0.92054 0.92706 0.95257 0.89543 0.87211 0.82649 0.84122 0.79047 0.78362 0.83766 0.83552 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -22.86 13.96 55.43 0.77 -22.08 16 2 C 0.09 2.04 5.47 -17.82 -0.10 1.94 16 3 Si 0.86 17.77 27.47 -169.99 -4.67 13.10 16 4 H -0.27 -5.66 7.11 56.52 0.40 -5.26 16 5 H -0.28 -5.92 7.11 56.52 0.40 -5.52 16 6 H -0.26 -5.06 6.54 56.52 0.37 -4.69 16 7 C -0.56 -12.83 7.37 -34.44 -0.25 -13.08 16 8 H 0.10 2.58 5.30 -52.49 -0.28 2.30 16 9 C 0.18 3.64 3.72 -5.19 -0.02 3.62 16 10 N -0.58 -11.40 2.53 -177.63 -0.45 -11.85 16 11 C 0.21 3.73 5.77 -5.19 -0.03 3.70 16 12 C -0.03 -0.60 6.37 -35.62 -0.23 -0.83 16 13 C -0.16 -3.17 8.53 -39.70 -0.34 -3.51 16 14 C -0.21 -3.74 10.91 -39.70 -0.43 -4.18 16 15 C -0.06 -0.93 12.09 29.42 0.36 -0.58 16 16 O -0.17 -3.34 10.65 5.72 0.06 -3.28 16 17 C 0.56 11.56 7.30 -12.43 -0.09 11.47 16 18 O -0.54 -12.27 15.62 5.30 0.08 -12.19 16 19 C -0.16 -3.04 5.45 -104.91 -0.57 -3.61 16 20 C -0.05 -0.84 7.36 -39.20 -0.29 -1.13 16 21 C -0.14 -2.10 9.81 -39.61 -0.39 -2.49 16 22 C 0.01 0.17 6.32 -39.40 -0.25 -0.08 16 23 Cl -0.06 -0.77 28.95 -51.86 -1.50 -2.27 16 24 C -0.17 -2.43 9.79 -39.53 -0.39 -2.82 16 25 C 0.16 2.74 7.24 -38.97 -0.28 2.46 16 26 F -0.12 -2.11 16.02 2.25 0.04 -2.07 16 27 H 0.27 6.67 8.31 -40.82 -0.34 6.33 16 28 H 0.06 1.09 3.13 -51.93 -0.16 0.93 16 29 H 0.03 0.57 7.57 -51.93 -0.39 0.17 16 30 H 0.09 1.48 7.58 -51.93 -0.39 1.09 16 31 H 0.11 1.69 8.03 -51.93 -0.42 1.27 16 32 H 0.16 3.12 7.76 -52.49 -0.41 2.71 16 33 H 0.14 2.14 8.06 -52.49 -0.42 1.72 16 34 H 0.19 2.36 8.06 -52.48 -0.42 1.94 16 35 H 0.20 3.98 3.95 -52.48 -0.21 3.77 16 36 H 0.14 1.99 8.06 -52.48 -0.42 1.57 16 37 H 0.15 1.70 8.06 -52.48 -0.42 1.27 16 LS Contribution 333.31 15.07 5.02 5.02 Total: -1.00 -28.07 333.31 -7.06 -35.13 By element: Atomic # 1 Polarization: 12.73 SS G_CDS: -3.12 Total: 9.61 kcal Atomic # 6 Polarization: -5.82 SS G_CDS: -3.30 Total: -9.12 kcal Atomic # 7 Polarization: -34.26 SS G_CDS: 0.32 Total: -33.93 kcal Atomic # 8 Polarization: -15.61 SS G_CDS: 0.14 Total: -15.47 kcal Atomic # 9 Polarization: -2.11 SS G_CDS: 0.04 Total: -2.07 kcal Atomic # 14 Polarization: 17.77 SS G_CDS: -4.67 Total: 13.10 kcal Atomic # 17 Polarization: -0.77 SS G_CDS: -1.50 Total: -2.27 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -28.07 -7.06 -35.13 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000079333494.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.828 kcal (2) G-P(sol) polarization free energy of solvation -28.070 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.242 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.062 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.132 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.305 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds