Wall clock time and date at job start Tue Mar 31 2020 05:01:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35893 * 117.00341 * 2 1 4 4 C 1.38768 * 120.02982 * 179.97438 * 3 2 1 5 5 C 1.38173 * 120.05759 * 180.02562 * 4 3 2 6 6 C 1.50702 * 119.94968 * 179.97438 * 5 4 3 7 7 C 1.53003 * 109.46956 * 89.99529 * 6 5 4 8 8 C 1.50697 * 109.46624 * 179.97438 * 7 6 5 9 9 O 1.21283 * 120.00521 * 359.73045 * 8 7 6 10 10 N 1.34784 * 119.99774 * 180.02562 * 8 7 6 11 11 C 1.46499 * 119.99893 * 179.72962 * 10 8 7 12 12 C 1.50697 * 109.47293 * 90.00297 * 11 10 8 13 13 H 1.07997 * 120.00010 * 359.97438 * 12 11 10 14 14 C 1.37875 * 120.00091 * 180.02562 * 12 11 10 15 15 N 1.31510 * 120.00242 * 179.97438 * 14 12 11 16 16 Si 1.86807 * 119.99879 * 359.97438 * 14 12 11 17 17 H 1.48499 * 109.46938 * 90.00404 * 16 14 12 18 18 H 1.48499 * 109.47143 * 210.00686 * 16 14 12 19 19 H 1.48496 * 109.47136 * 330.00589 * 16 14 12 20 20 C 1.46499 * 119.99971 * 359.72768 * 10 8 7 21 21 C 1.52996 * 109.47349 * 119.99826 * 20 10 8 22 22 C 1.52998 * 109.47194 * 240.00124 * 20 10 8 23 23 C 1.38178 * 120.10906 * 0.23055 * 5 4 3 24 24 C 1.38779 * 120.04992 * 359.49675 * 23 5 4 25 25 O 1.35902 * 120.02421 * 180.27348 * 24 23 5 26 26 C 1.42898 * 116.99593 * 180.25038 * 25 24 23 27 27 C 1.38630 * 119.94573 * 0.52477 * 24 23 5 28 28 H 1.09002 * 109.47202 * 300.00260 * 1 2 3 29 29 H 1.09001 * 109.47318 * 59.99644 * 1 2 3 30 30 H 1.09000 * 109.47719 * 179.97438 * 1 2 3 31 31 H 1.08007 * 119.97099 * 0.02622 * 4 3 2 32 32 H 1.09001 * 109.46645 * 330.00340 * 6 5 4 33 33 H 1.08993 * 109.47357 * 210.00102 * 6 5 4 34 34 H 1.09001 * 109.46782 * 60.00894 * 7 6 5 35 35 H 1.08993 * 109.47555 * 300.00451 * 7 6 5 36 36 H 1.08997 * 109.46865 * 210.00034 * 11 10 8 37 37 H 1.08998 * 109.47058 * 329.99547 * 11 10 8 38 38 H 0.96997 * 120.00230 * 179.97438 * 15 14 12 39 39 H 1.09004 * 109.46973 * 359.97438 * 20 10 8 40 40 H 1.08998 * 109.47017 * 59.99612 * 21 20 10 41 41 H 1.08996 * 109.47637 * 180.02562 * 21 20 10 42 42 H 1.09009 * 109.47102 * 300.00533 * 21 20 10 43 43 H 1.08998 * 109.47156 * 60.00056 * 22 20 10 44 44 H 1.09005 * 109.46870 * 179.97438 * 22 20 10 45 45 H 1.09004 * 109.47239 * 299.99932 * 22 20 10 46 46 H 1.08002 * 119.97724 * 179.72138 * 23 5 4 47 47 H 1.08995 * 109.47277 * 60.00206 * 26 25 24 48 48 H 1.09003 * 109.47078 * 180.02562 * 26 25 24 49 49 H 1.09000 * 109.47452 * 299.99790 * 26 25 24 50 50 H 1.08001 * 120.05192 * 179.70311 * 27 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 3.4318 1.2840 0.0005 5 6 4.0597 2.5148 0.0011 6 6 5.5648 2.5916 0.0022 7 6 6.0752 2.6175 -1.4399 8 6 7.5802 2.6948 -1.4387 9 8 8.1848 2.7311 -0.3879 10 7 8.2541 2.7297 -2.6054 11 6 9.7169 2.8109 -2.6042 12 6 10.2972 1.4202 -2.6008 13 1 9.6420 0.5617 -2.5993 14 6 11.6646 1.2438 -2.5987 15 7 12.1711 0.0301 -2.5952 16 14 12.7980 2.7288 -2.6007 17 1 13.0965 3.1254 -1.2011 18 1 14.0630 2.3851 -3.2984 19 1 12.1353 3.8563 -3.3040 20 6 7.5239 2.6864 -3.8747 21 6 7.8244 3.9525 -4.6794 22 6 7.9629 1.4579 -4.6740 23 6 3.3100 3.6755 0.0059 24 6 1.9239 3.6075 -0.0004 25 8 1.1870 4.7495 -0.0012 26 6 -0.2345 4.6041 -0.0022 27 6 1.2916 2.3739 -0.0004 28 1 -0.3634 0.5139 0.8900 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3634 -1.0276 -0.0005 31 1 4.0200 0.3782 0.0005 32 1 5.9725 1.7211 0.5163 33 1 5.8820 3.4988 0.5163 34 1 5.6675 3.4879 -1.9540 35 1 5.7580 1.7102 -1.9540 36 1 10.0520 3.3422 -3.4950 37 1 10.0503 3.3460 -1.7151 38 1 13.1331 -0.0940 -2.5941 39 1 6.4537 2.6270 -3.6763 40 1 8.8945 4.0116 -4.8777 41 1 7.2807 3.9206 -5.6236 42 1 7.5116 4.8278 -4.1099 43 1 7.7488 0.5559 -4.1007 44 1 7.4192 1.4255 -5.6182 45 1 9.0331 1.5169 -4.8723 46 1 3.8031 4.6364 0.0108 47 1 -0.5444 4.0564 0.8877 48 1 -0.7005 5.5896 -0.0033 49 1 -0.5431 4.0558 -0.8923 50 1 0.2129 2.3189 -0.0004 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000079335539.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:01:38 Heat of formation + Delta-G solvation = -91.815450 kcal Electronic energy + Delta-G solvation = -29128.683534 eV Core-core repulsion = 25121.788727 eV Total energy + Delta-G solvation = -4006.894807 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.193 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.77719 -39.32951 -39.05688 -37.33826 -36.00844 -33.35141 -32.61748 -30.94762 -30.51175 -29.81575 -28.40713 -27.65469 -26.88177 -26.72597 -24.52399 -22.60472 -22.15661 -21.29721 -20.74099 -18.49985 -17.90668 -17.24800 -16.84451 -16.63258 -16.28110 -16.23737 -16.16931 -15.77497 -15.17674 -15.00221 -14.93906 -14.12909 -13.87097 -13.61713 -13.52833 -13.25707 -12.98775 -12.91917 -12.50462 -12.48212 -12.20352 -12.10578 -11.98574 -11.90305 -11.77846 -11.66437 -11.42228 -11.32961 -11.30504 -10.93381 -10.83138 -10.77204 -10.61332 -10.45101 -10.26196 -10.05720 -9.41576 -8.98428 -8.68245 -8.52906 -8.16633 -7.64457 -6.03092 -4.00073 1.12930 1.32261 2.94727 3.00504 3.32263 3.38167 3.40571 3.42172 3.53203 3.89553 4.44238 4.50432 4.60754 4.68052 4.76188 4.79142 4.86035 4.97460 5.00145 5.07561 5.12084 5.18992 5.19793 5.26622 5.30568 5.32201 5.48732 5.52196 5.60779 5.67084 5.77025 6.00672 6.03125 6.06089 6.07428 6.13964 6.28392 6.31882 6.35288 6.49500 6.55918 6.57182 6.83230 6.92214 7.01804 7.04630 7.26846 7.44187 7.68125 8.34839 8.53948 9.00139 9.06596 9.57954 11.10176 Molecular weight = 335.19amu Principal moments of inertia in cm(-1) A = 0.016946 B = 0.002478 C = 0.002397 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1651.915330 B =11296.158619 C =11679.832435 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.313 6.313 3 C 0.165 3.835 4 C -0.182 4.182 5 C 0.003 3.997 6 C -0.067 4.067 7 C -0.133 4.133 8 C 0.507 3.493 9 O -0.542 6.542 10 N -0.589 5.589 11 C 0.215 3.785 12 C -0.519 4.519 13 H 0.076 0.924 14 C 0.071 3.929 15 N -0.899 5.899 16 Si 0.873 3.127 17 H -0.275 1.275 18 H -0.286 1.286 19 H -0.267 1.267 20 C 0.133 3.867 21 C -0.163 4.163 22 C -0.157 4.157 23 C -0.184 4.184 24 C 0.164 3.836 25 O -0.314 6.314 26 C 0.028 3.972 27 C -0.304 4.304 28 H 0.053 0.947 29 H 0.054 0.946 30 H 0.100 0.900 31 H 0.135 0.865 32 H 0.087 0.913 33 H 0.085 0.915 34 H 0.088 0.912 35 H 0.091 0.909 36 H 0.030 0.970 37 H 0.034 0.966 38 H 0.263 0.737 39 H 0.079 0.921 40 H 0.065 0.935 41 H 0.060 0.940 42 H 0.052 0.948 43 H 0.057 0.943 44 H 0.048 0.952 45 H 0.080 0.920 46 H 0.133 0.867 47 H 0.053 0.947 48 H 0.100 0.900 49 H 0.054 0.946 50 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.243 6.610 0.896 28.048 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.226 6.226 3 C 0.119 3.881 4 C -0.201 4.201 5 C 0.003 3.997 6 C -0.104 4.104 7 C -0.173 4.173 8 C 0.294 3.706 9 O -0.420 6.420 10 N -0.321 5.321 11 C 0.094 3.906 12 C -0.558 4.558 13 H 0.094 0.906 14 C -0.131 4.131 15 N -0.538 5.538 16 Si 0.700 3.300 17 H -0.200 1.200 18 H -0.212 1.212 19 H -0.191 1.191 20 C 0.028 3.972 21 C -0.221 4.221 22 C -0.215 4.215 23 C -0.202 4.202 24 C 0.118 3.882 25 O -0.227 6.227 26 C -0.067 4.067 27 C -0.323 4.323 28 H 0.072 0.928 29 H 0.072 0.928 30 H 0.119 0.881 31 H 0.153 0.847 32 H 0.106 0.894 33 H 0.103 0.897 34 H 0.106 0.894 35 H 0.109 0.891 36 H 0.048 0.952 37 H 0.052 0.948 38 H 0.073 0.927 39 H 0.097 0.903 40 H 0.084 0.916 41 H 0.079 0.921 42 H 0.071 0.929 43 H 0.076 0.924 44 H 0.067 0.933 45 H 0.099 0.901 46 H 0.151 0.849 47 H 0.072 0.928 48 H 0.118 0.882 49 H 0.072 0.928 50 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -26.593 6.541 1.438 27.423 hybrid contribution 0.086 0.530 -0.127 0.551 sum -26.508 7.071 1.311 27.466 Atomic orbital electron populations 1.23045 0.78598 1.03972 1.01129 1.86112 1.21225 1.26866 1.88402 1.18706 0.92013 0.83465 0.93877 1.20304 0.91009 0.98662 1.10105 1.19545 0.95881 0.91121 0.93177 1.20398 0.88318 1.05128 0.96566 1.21656 0.93835 1.04007 0.97842 1.20339 0.89131 0.77113 0.83995 1.90669 1.70297 1.50152 1.30865 1.48027 1.08438 1.71268 1.04347 1.19609 0.75547 0.98300 0.97150 1.21342 0.92165 0.91697 1.50563 0.90559 1.24854 0.97968 0.95557 0.94741 1.69892 1.12296 1.20651 1.50934 0.86902 0.80657 0.83623 0.78812 1.20014 1.21226 1.19142 1.21036 0.95670 0.95609 0.84853 1.22171 1.02952 0.97391 0.99562 1.22136 1.03817 0.97230 0.98286 1.20257 0.90081 0.99371 1.10523 1.18696 0.91111 0.84327 0.94060 1.86097 1.18999 1.29148 1.88493 1.23040 0.78706 1.03815 1.01185 1.21171 1.00201 0.92062 1.18876 0.92818 0.92777 0.88132 0.84725 0.89431 0.89669 0.89386 0.89105 0.95217 0.94803 0.92695 0.90313 0.91648 0.92068 0.92870 0.92425 0.93297 0.90109 0.84909 0.92798 0.88180 0.92762 0.85126 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.18 9.81 101.05 0.99 1.17 16 2 O -0.31 -3.40 10.50 -19.40 -0.20 -3.60 16 3 C 0.16 1.92 6.68 -39.24 -0.26 1.66 16 4 C -0.18 -2.27 9.63 -39.41 -0.38 -2.65 16 5 C 0.00 0.04 5.13 -104.67 -0.54 -0.50 16 6 C -0.07 -0.92 4.63 -27.88 -0.13 -1.05 16 7 C -0.13 -1.93 3.99 -27.88 -0.11 -2.04 16 8 C 0.51 10.18 7.67 -10.98 -0.08 10.10 16 9 O -0.54 -13.15 15.56 5.56 0.09 -13.06 16 10 N -0.59 -11.99 2.39 -167.48 -0.40 -12.39 16 11 C 0.21 5.21 3.66 -5.20 -0.02 5.19 16 12 C -0.52 -14.65 8.38 -34.44 -0.29 -14.94 16 13 H 0.08 2.36 7.87 -52.49 -0.41 1.94 16 14 C 0.07 2.05 5.47 -17.82 -0.10 1.95 16 15 N -0.90 -27.68 13.96 55.43 0.77 -26.90 16 16 Si 0.87 21.69 27.47 -169.99 -4.67 17.02 16 17 H -0.27 -6.90 7.11 56.52 0.40 -6.50 16 18 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 19 H -0.27 -6.23 6.54 56.52 0.37 -5.86 16 20 C 0.13 2.12 3.17 -67.93 -0.22 1.90 16 21 C -0.16 -2.27 9.17 37.16 0.34 -1.93 16 22 C -0.16 -2.64 8.47 37.16 0.31 -2.33 16 23 C -0.18 -2.20 9.63 -39.40 -0.38 -2.58 16 24 C 0.16 1.85 6.68 -39.24 -0.26 1.59 16 25 O -0.31 -3.25 10.50 -19.43 -0.20 -3.45 16 26 C 0.03 0.17 9.81 101.05 0.99 1.16 16 27 C -0.30 -3.13 8.02 -39.29 -0.32 -3.45 16 28 H 0.05 0.29 7.66 -51.93 -0.40 -0.11 16 29 H 0.05 0.29 7.66 -51.93 -0.40 -0.11 16 30 H 0.10 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.13 1.65 8.06 -52.48 -0.42 1.23 16 32 H 0.09 1.31 8.04 -51.93 -0.42 0.89 16 33 H 0.08 1.20 8.04 -51.93 -0.42 0.78 16 34 H 0.09 1.09 7.80 -51.93 -0.40 0.68 16 35 H 0.09 1.23 7.78 -51.93 -0.40 0.82 16 36 H 0.03 0.69 5.49 -51.93 -0.28 0.41 16 37 H 0.03 0.89 6.85 -51.93 -0.36 0.53 16 38 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 39 H 0.08 1.05 5.77 -51.93 -0.30 0.75 16 40 H 0.06 1.02 6.66 -51.93 -0.35 0.67 16 41 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 42 H 0.05 0.70 8.14 -51.92 -0.42 0.28 16 43 H 0.06 1.05 8.14 -51.93 -0.42 0.62 16 44 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 45 H 0.08 1.60 6.92 -51.93 -0.36 1.24 16 46 H 0.13 1.49 8.06 -52.49 -0.42 1.07 16 47 H 0.05 0.28 7.66 -51.93 -0.40 -0.12 16 48 H 0.10 0.40 8.14 -51.93 -0.42 -0.02 16 49 H 0.05 0.28 7.66 -51.93 -0.40 -0.12 16 50 H 0.13 1.01 4.54 -52.49 -0.24 0.77 16 LS Contribution 400.83 15.07 6.04 6.04 Total: -1.00 -34.93 400.83 -7.10 -42.03 By element: Atomic # 1 Polarization: 9.14 SS G_CDS: -8.08 Total: 1.06 kcal Atomic # 6 Polarization: -6.30 SS G_CDS: -0.44 Total: -6.74 kcal Atomic # 7 Polarization: -39.67 SS G_CDS: 0.37 Total: -39.29 kcal Atomic # 8 Polarization: -19.80 SS G_CDS: -0.32 Total: -20.12 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -4.67 Total: 17.02 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -34.93 -7.10 -42.03 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000079335539.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.786 kcal (2) G-P(sol) polarization free energy of solvation -34.930 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.716 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.099 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.030 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.815 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds