Wall clock time and date at job start Tue Mar 31 2020 05:01:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35893 * 117.00341 * 2 1 4 4 C 1.38768 * 120.02982 * 179.97438 * 3 2 1 5 5 C 1.38173 * 120.05759 * 180.02562 * 4 3 2 6 6 C 1.50702 * 119.94968 * 179.97438 * 5 4 3 7 7 C 1.53003 * 109.46956 * 89.99529 * 6 5 4 8 8 C 1.50697 * 109.46624 * 179.97438 * 7 6 5 9 9 O 1.21283 * 120.00521 * 359.73045 * 8 7 6 10 10 N 1.34784 * 119.99774 * 180.02562 * 8 7 6 11 11 C 1.46499 * 119.99893 * 179.72962 * 10 8 7 12 12 C 1.50697 * 109.47293 * 90.00297 * 11 10 8 13 13 H 1.07997 * 120.00010 * 359.97438 * 12 11 10 14 14 C 1.37875 * 120.00091 * 180.02562 * 12 11 10 15 15 N 1.31510 * 120.00242 * 179.97438 * 14 12 11 16 16 Si 1.86807 * 119.99879 * 359.97438 * 14 12 11 17 17 H 1.48499 * 109.46938 * 90.00404 * 16 14 12 18 18 H 1.48499 * 109.47143 * 210.00686 * 16 14 12 19 19 H 1.48496 * 109.47136 * 330.00589 * 16 14 12 20 20 C 1.46499 * 119.99971 * 359.72768 * 10 8 7 21 21 C 1.52996 * 109.47349 * 119.99826 * 20 10 8 22 22 C 1.52998 * 109.47194 * 240.00124 * 20 10 8 23 23 C 1.38178 * 120.10906 * 0.23055 * 5 4 3 24 24 C 1.38779 * 120.04992 * 359.49675 * 23 5 4 25 25 O 1.35902 * 120.02421 * 180.27348 * 24 23 5 26 26 C 1.42898 * 116.99593 * 180.25038 * 25 24 23 27 27 C 1.38630 * 119.94573 * 0.52477 * 24 23 5 28 28 H 1.09002 * 109.47202 * 300.00260 * 1 2 3 29 29 H 1.09001 * 109.47318 * 59.99644 * 1 2 3 30 30 H 1.09000 * 109.47719 * 179.97438 * 1 2 3 31 31 H 1.08007 * 119.97099 * 0.02622 * 4 3 2 32 32 H 1.09001 * 109.46645 * 330.00340 * 6 5 4 33 33 H 1.08993 * 109.47357 * 210.00102 * 6 5 4 34 34 H 1.09001 * 109.46782 * 60.00894 * 7 6 5 35 35 H 1.08993 * 109.47555 * 300.00451 * 7 6 5 36 36 H 1.08997 * 109.46865 * 210.00034 * 11 10 8 37 37 H 1.08998 * 109.47058 * 329.99547 * 11 10 8 38 38 H 0.96997 * 120.00230 * 179.97438 * 15 14 12 39 39 H 1.09004 * 109.46973 * 359.97438 * 20 10 8 40 40 H 1.08998 * 109.47017 * 59.99612 * 21 20 10 41 41 H 1.08996 * 109.47637 * 180.02562 * 21 20 10 42 42 H 1.09009 * 109.47102 * 300.00533 * 21 20 10 43 43 H 1.08998 * 109.47156 * 60.00056 * 22 20 10 44 44 H 1.09005 * 109.46870 * 179.97438 * 22 20 10 45 45 H 1.09004 * 109.47239 * 299.99932 * 22 20 10 46 46 H 1.08002 * 119.97724 * 179.72138 * 23 5 4 47 47 H 1.08995 * 109.47277 * 60.00206 * 26 25 24 48 48 H 1.09003 * 109.47078 * 180.02562 * 26 25 24 49 49 H 1.09000 * 109.47452 * 299.99790 * 26 25 24 50 50 H 1.08001 * 120.05192 * 179.70311 * 27 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 3.4318 1.2840 0.0005 5 6 4.0597 2.5148 0.0011 6 6 5.5648 2.5916 0.0022 7 6 6.0752 2.6175 -1.4399 8 6 7.5802 2.6948 -1.4387 9 8 8.1848 2.7311 -0.3879 10 7 8.2541 2.7297 -2.6054 11 6 9.7169 2.8109 -2.6042 12 6 10.2972 1.4202 -2.6008 13 1 9.6420 0.5617 -2.5993 14 6 11.6646 1.2438 -2.5987 15 7 12.1711 0.0301 -2.5952 16 14 12.7980 2.7288 -2.6007 17 1 13.0965 3.1254 -1.2011 18 1 14.0630 2.3851 -3.2984 19 1 12.1353 3.8563 -3.3040 20 6 7.5239 2.6864 -3.8747 21 6 7.8244 3.9525 -4.6794 22 6 7.9629 1.4579 -4.6740 23 6 3.3100 3.6755 0.0059 24 6 1.9239 3.6075 -0.0004 25 8 1.1870 4.7495 -0.0012 26 6 -0.2345 4.6041 -0.0022 27 6 1.2916 2.3739 -0.0004 28 1 -0.3634 0.5139 0.8900 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3634 -1.0276 -0.0005 31 1 4.0200 0.3782 0.0005 32 1 5.9725 1.7211 0.5163 33 1 5.8820 3.4988 0.5163 34 1 5.6675 3.4879 -1.9540 35 1 5.7580 1.7102 -1.9540 36 1 10.0520 3.3422 -3.4950 37 1 10.0503 3.3460 -1.7151 38 1 13.1331 -0.0940 -2.5941 39 1 6.4537 2.6270 -3.6763 40 1 8.8945 4.0116 -4.8777 41 1 7.2807 3.9206 -5.6236 42 1 7.5116 4.8278 -4.1099 43 1 7.7488 0.5559 -4.1007 44 1 7.4192 1.4255 -5.6182 45 1 9.0331 1.5169 -4.8723 46 1 3.8031 4.6364 0.0108 47 1 -0.5444 4.0564 0.8877 48 1 -0.7005 5.5896 -0.0033 49 1 -0.5431 4.0558 -0.8923 50 1 0.2129 2.3189 -0.0004 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000079335539.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:01:37 Heat of formation + Delta-G solvation = -114.238624 kcal Electronic energy + Delta-G solvation = -29129.655876 eV Core-core repulsion = 25121.788727 eV Total energy + Delta-G solvation = -4007.867149 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.193 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.59041 -40.87177 -39.77127 -38.25444 -37.53684 -34.93709 -34.26136 -32.55128 -31.27474 -31.05078 -29.61879 -28.71356 -27.96713 -27.45439 -25.87257 -23.93022 -23.42261 -22.64334 -21.71477 -19.45262 -19.31771 -19.03960 -18.06912 -17.97248 -17.14705 -17.01254 -16.95225 -16.85061 -16.39027 -16.38136 -15.91110 -15.64259 -15.16558 -14.85921 -14.65451 -14.59698 -14.22032 -14.05955 -13.83944 -13.59317 -13.57567 -13.30532 -13.14876 -13.01859 -12.84961 -12.74200 -12.55700 -12.45748 -12.33964 -12.27342 -12.16295 -12.12269 -11.94652 -11.90156 -11.72287 -11.52629 -11.33584 -10.78031 -10.58826 -9.57917 -9.36761 -9.00732 -8.28888 -6.30849 0.25846 0.45635 1.32294 1.36400 1.44105 1.84469 2.24115 2.32996 2.35230 2.36353 2.69943 3.05068 3.54928 3.87346 3.94062 3.97272 4.07992 4.10522 4.14454 4.27511 4.30124 4.33321 4.36642 4.39246 4.43436 4.44370 4.50175 4.59958 4.63006 4.72386 4.74221 4.78024 4.89084 4.93234 4.99281 5.00917 5.06748 5.10941 5.14070 5.21563 5.27222 5.42425 5.50629 5.60353 5.61006 5.62170 5.74407 6.21284 6.30894 6.52105 6.69663 6.78317 7.27455 7.47843 8.87843 Molecular weight = 335.19amu Principal moments of inertia in cm(-1) A = 0.016946 B = 0.002478 C = 0.002397 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1651.915330 B =11296.158619 C =11679.832435 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.333 6.333 3 C 0.160 3.840 4 C -0.201 4.201 5 C 0.002 3.998 6 C -0.059 4.059 7 C -0.118 4.118 8 C 0.497 3.503 9 O -0.594 6.594 10 N -0.596 5.596 11 C 0.224 3.776 12 C -0.516 4.516 13 H 0.033 0.967 14 C 0.009 3.991 15 N -0.947 5.947 16 Si 0.940 3.060 17 H -0.279 1.279 18 H -0.277 1.277 19 H -0.240 1.240 20 C 0.125 3.875 21 C -0.157 4.157 22 C -0.151 4.151 23 C -0.194 4.194 24 C 0.162 3.838 25 O -0.329 6.329 26 C 0.016 3.984 27 C -0.296 4.296 28 H 0.066 0.934 29 H 0.067 0.933 30 H 0.118 0.882 31 H 0.126 0.874 32 H 0.066 0.934 33 H 0.079 0.921 34 H 0.121 0.879 35 H 0.104 0.896 36 H 0.047 0.953 37 H 0.014 0.986 38 H 0.266 0.734 39 H 0.115 0.885 40 H 0.044 0.956 41 H 0.095 0.905 42 H 0.063 0.937 43 H 0.032 0.968 44 H 0.089 0.911 45 H 0.043 0.957 46 H 0.137 0.863 47 H 0.064 0.936 48 H 0.120 0.880 49 H 0.066 0.934 50 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.440 8.874 -0.440 31.710 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 O -0.247 6.247 3 C 0.115 3.885 4 C -0.220 4.220 5 C 0.002 3.998 6 C -0.097 4.097 7 C -0.158 4.158 8 C 0.286 3.714 9 O -0.476 6.476 10 N -0.326 5.326 11 C 0.102 3.898 12 C -0.555 4.555 13 H 0.051 0.949 14 C -0.189 4.189 15 N -0.588 5.588 16 Si 0.764 3.236 17 H -0.205 1.205 18 H -0.202 1.202 19 H -0.163 1.163 20 C 0.023 3.977 21 C -0.215 4.215 22 C -0.209 4.209 23 C -0.213 4.213 24 C 0.116 3.884 25 O -0.242 6.242 26 C -0.078 4.078 27 C -0.315 4.315 28 H 0.084 0.916 29 H 0.086 0.914 30 H 0.137 0.863 31 H 0.144 0.856 32 H 0.085 0.915 33 H 0.098 0.902 34 H 0.139 0.861 35 H 0.123 0.877 36 H 0.065 0.935 37 H 0.032 0.968 38 H 0.075 0.925 39 H 0.133 0.867 40 H 0.063 0.937 41 H 0.114 0.886 42 H 0.082 0.918 43 H 0.051 0.949 44 H 0.108 0.892 45 H 0.062 0.938 46 H 0.155 0.845 47 H 0.083 0.917 48 H 0.138 0.862 49 H 0.085 0.915 50 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -29.849 8.814 0.062 31.123 hybrid contribution 0.889 -0.275 0.304 0.979 sum -28.959 8.539 0.366 30.194 Atomic orbital electron populations 1.23380 0.76304 1.05717 1.02354 1.86093 1.23674 1.26641 1.88246 1.18770 0.91824 0.84326 0.93621 1.20340 0.91916 0.98397 1.11337 1.19257 0.94632 0.91530 0.94380 1.20245 0.89609 1.03905 0.95955 1.21624 0.89233 1.06017 0.98890 1.21357 0.91416 0.75564 0.83042 1.90636 1.71866 1.52357 1.32716 1.48171 1.07115 1.70928 1.06433 1.19241 0.78401 0.95455 0.96701 1.21513 0.91922 0.92472 1.49613 0.94893 1.25786 0.99869 0.98738 0.94473 1.70045 1.12824 1.23208 1.52702 0.85820 0.78622 0.80358 0.78809 1.20453 1.20235 1.16295 1.21435 0.97015 0.96278 0.82996 1.22139 1.02154 0.96289 1.00922 1.22071 1.01973 0.96809 1.00089 1.20328 0.90814 0.99189 1.10921 1.18765 0.91071 0.85066 0.93497 1.86086 1.21123 1.28817 1.88218 1.23380 0.76492 1.05646 1.02281 1.21388 1.01527 0.91090 1.17493 0.91574 0.91431 0.86346 0.85581 0.91540 0.90212 0.86089 0.87743 0.93494 0.96841 0.92536 0.86726 0.93682 0.88592 0.91765 0.94902 0.89229 0.93764 0.84496 0.91723 0.86156 0.91541 0.82408 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.17 9.81 113.37 1.11 1.28 16 2 O -0.33 -6.75 10.50 -92.35 -0.97 -7.72 16 3 C 0.16 3.53 6.68 22.49 0.15 3.68 16 4 C -0.20 -4.99 9.63 22.38 0.22 -4.77 16 5 C 0.00 0.06 5.13 -19.89 -0.10 -0.04 16 6 C -0.06 -1.67 4.63 29.85 0.14 -1.53 16 7 C -0.12 -3.31 3.99 29.85 0.12 -3.19 16 8 C 0.50 20.19 7.67 87.65 0.67 20.86 16 9 O -0.59 -30.04 15.56 -3.04 -0.05 -30.08 16 10 N -0.60 -24.25 2.39 -802.15 -1.91 -26.17 16 11 C 0.22 11.06 3.66 85.63 0.31 11.37 16 12 C -0.52 -30.41 8.38 25.60 0.21 -30.20 16 13 H 0.03 2.17 7.87 -2.91 -0.02 2.14 16 14 C 0.01 0.52 5.47 84.65 0.46 0.98 16 15 N -0.95 -60.67 13.96 21.45 0.30 -60.37 16 16 Si 0.94 45.43 27.47 68.60 1.88 47.31 16 17 H -0.28 -13.60 7.11 99.48 0.71 -12.90 16 18 H -0.28 -12.88 7.11 99.48 0.71 -12.17 16 19 H -0.24 -10.43 6.54 99.48 0.65 -9.78 16 20 C 0.13 3.75 3.17 44.99 0.14 3.90 16 21 C -0.16 -3.88 9.17 71.98 0.66 -3.22 16 22 C -0.15 -5.01 8.47 71.98 0.61 -4.40 16 23 C -0.19 -4.39 9.63 22.39 0.22 -4.17 16 24 C 0.16 3.32 6.68 22.49 0.15 3.47 16 25 O -0.33 -5.95 10.50 -92.45 -0.97 -6.92 16 26 C 0.02 0.14 9.81 113.37 1.11 1.25 16 27 C -0.30 -5.37 8.02 22.46 0.18 -5.19 16 28 H 0.07 0.51 7.66 -2.39 -0.02 0.49 16 29 H 0.07 0.51 7.66 -2.39 -0.02 0.49 16 30 H 0.12 0.76 8.14 -2.39 -0.02 0.74 16 31 H 0.13 3.22 8.06 -2.91 -0.02 3.20 16 32 H 0.07 2.11 8.04 -2.39 -0.02 2.10 16 33 H 0.08 2.30 8.04 -2.39 -0.02 2.28 16 34 H 0.12 2.63 7.80 -2.39 -0.02 2.61 16 35 H 0.10 2.68 7.78 -2.39 -0.02 2.66 16 36 H 0.05 2.16 5.49 -2.39 -0.01 2.15 16 37 H 0.01 0.72 6.85 -2.39 -0.02 0.71 16 38 H 0.27 15.91 8.31 -92.71 -0.77 15.14 16 39 H 0.11 2.64 5.77 -2.38 -0.01 2.63 16 40 H 0.04 1.30 6.66 -2.39 -0.02 1.28 16 41 H 0.10 1.73 8.14 -2.39 -0.02 1.71 16 42 H 0.06 1.46 8.14 -2.38 -0.02 1.44 16 43 H 0.03 1.21 8.14 -2.39 -0.02 1.19 16 44 H 0.09 2.20 8.14 -2.38 -0.02 2.18 16 45 H 0.04 1.77 6.92 -2.38 -0.02 1.76 16 46 H 0.14 2.90 8.06 -2.91 -0.02 2.87 16 47 H 0.06 0.44 7.66 -2.39 -0.02 0.42 16 48 H 0.12 0.56 8.14 -2.39 -0.02 0.54 16 49 H 0.07 0.43 7.66 -2.39 -0.02 0.41 16 50 H 0.16 1.86 4.54 -2.91 -0.01 1.85 16 Total: -1.00 -81.27 400.83 5.52 -75.75 By element: Atomic # 1 Polarization: 17.26 SS G_CDS: 0.87 Total: 18.13 kcal Atomic # 6 Polarization: -16.30 SS G_CDS: 6.37 Total: -9.93 kcal Atomic # 7 Polarization: -84.93 SS G_CDS: -1.62 Total: -86.54 kcal Atomic # 8 Polarization: -42.74 SS G_CDS: -1.99 Total: -44.72 kcal Atomic # 14 Polarization: 45.43 SS G_CDS: 1.88 Total: 47.31 kcal Total: -81.27 5.52 -75.75 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000079335539.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.490 kcal (2) G-P(sol) polarization free energy of solvation -81.270 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.760 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.521 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.749 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.239 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds