Wall clock time and date at job start Tue Mar 31 2020 05:53:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81403 * 1 3 3 O 1.42098 * 110.54244 * 2 1 4 4 O 1.42101 * 110.54115 * 223.24290 * 2 1 3 5 5 C 1.76211 * 104.44803 * 111.62084 * 2 1 3 6 6 C 1.38388 * 119.92122 * 269.97867 * 5 2 1 7 7 C 1.38362 * 120.30299 * 180.02562 * 6 5 2 8 8 C 1.37959 * 120.14792 * 359.69513 * 7 6 5 9 9 C 1.39629 * 119.84639 * 0.55363 * 8 7 6 10 10 C 1.47721 * 120.15066 * 179.74317 * 9 8 7 11 11 O 1.21585 * 119.99935 * 148.74181 * 10 9 8 12 12 N 1.34774 * 120.00277 * 328.74813 * 10 9 8 13 13 C 1.36877 * 119.99686 * 2.22607 * 12 10 9 14 14 H 1.08000 * 119.99971 * 120.80817 * 13 12 10 15 15 C 1.39053 * 119.99941 * 300.79720 * 13 12 10 16 16 N 1.31363 * 119.99808 * 169.86800 * 15 13 12 17 17 Si 1.86800 * 119.99941 * 349.86972 * 15 13 12 18 18 H 1.48507 * 109.46752 * 94.36786 * 17 15 13 19 19 H 1.48500 * 109.46986 * 214.36174 * 17 15 13 20 20 H 1.48495 * 109.47296 * 334.36685 * 17 15 13 21 21 C 1.46501 * 120.00478 * 182.22503 * 12 10 9 22 22 C 1.54266 * 110.03096 * 122.08864 * 21 12 10 23 23 C 1.54968 * 104.15878 * 95.76036 * 22 21 12 24 24 C 1.54887 * 102.77668 * 37.88779 * 23 22 21 25 25 C 1.53870 * 110.03589 * 239.30831 * 21 12 10 26 26 C 1.37914 * 119.92081 * 89.99918 * 5 2 1 27 27 H 1.09000 * 109.47241 * 308.37729 * 1 2 3 28 28 H 1.08997 * 109.46886 * 68.37808 * 1 2 3 29 29 H 1.08993 * 109.47279 * 188.37982 * 1 2 3 30 30 H 1.07996 * 119.85617 * 0.02562 * 6 5 2 31 31 H 1.07995 * 119.92411 * 179.97438 * 7 6 5 32 32 H 1.08003 * 120.07631 * 180.30457 * 8 7 6 33 33 H 0.96996 * 119.99470 * 180.02562 * 16 15 13 34 34 H 1.09006 * 110.01480 * 0.70106 * 21 12 10 35 35 H 1.09001 * 110.48789 * 214.40209 * 22 21 12 36 36 H 1.08999 * 110.49166 * 337.04751 * 22 21 12 37 37 H 1.09001 * 110.71655 * 279.56830 * 23 22 21 38 38 H 1.09003 * 110.92028 * 156.29740 * 23 22 21 39 39 H 1.09008 * 110.48178 * 203.40702 * 24 23 22 40 40 H 1.08992 * 110.60126 * 80.81730 * 24 23 22 41 41 H 1.09002 * 110.02964 * 359.95296 * 25 21 12 42 42 H 1.09000 * 110.03261 * 121.32869 * 25 21 12 43 43 H 1.08000 * 120.07972 * 359.97438 * 26 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.3127 1.3306 0.0000 4 8 2.3126 -0.9693 -0.9116 5 6 2.2537 -0.6287 1.5863 6 6 2.4263 0.2400 2.6496 7 6 2.7721 -0.2450 3.8984 8 6 2.9409 -1.6004 4.0929 9 6 2.7733 -2.4821 3.0233 10 6 2.9580 -3.9341 3.2227 11 8 2.3141 -4.7253 2.5611 12 7 3.8401 -4.3818 4.1380 13 6 4.5316 -3.4917 4.9146 14 1 4.4422 -3.5304 5.9902 15 6 5.3493 -2.5379 4.3187 16 7 5.8542 -1.5628 5.0398 17 14 5.7297 -2.6430 2.4929 18 1 4.7706 -1.7971 1.7380 19 1 7.1132 -2.1627 2.2471 20 1 5.6076 -4.0527 2.0422 21 6 4.0589 -5.8211 4.3018 22 6 5.5468 -6.1587 4.0736 23 6 6.1535 -6.1806 5.4994 24 6 5.0250 -6.8250 6.3420 25 6 3.7272 -6.2440 5.7436 26 6 2.4253 -1.9854 1.7652 27 1 -0.3634 0.6380 0.8056 28 1 -0.3633 0.3787 -0.9553 29 1 -0.3633 -1.0166 0.1498 30 1 2.2906 1.3015 2.5041 31 1 2.9057 0.4385 4.7238 32 1 3.2059 -1.9782 5.0694 33 1 6.4243 -0.8973 4.6240 34 1 3.4380 -6.3753 3.5978 35 1 5.6482 -7.1357 3.6011 36 1 6.0240 -5.3892 3.4668 37 1 6.3636 -5.1683 5.8446 38 1 7.0553 -6.7922 5.5293 39 1 5.1221 -6.5413 7.3901 40 1 5.0406 -7.9098 6.2383 41 1 3.4042 -5.3782 6.3217 42 1 2.9447 -7.0028 5.7394 43 1 2.2902 -2.6623 0.9345 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000080212329.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:53:11 Heat of formation + Delta-G solvation = -60.491307 kcal Electronic energy + Delta-G solvation = -28518.450319 eV Core-core repulsion = 24656.689032 eV Total energy + Delta-G solvation = -3861.761287 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 337.118 amu Computer time = 1.82 seconds Orbital eigenvalues (eV) -39.97473 -38.20660 -36.95750 -36.66117 -35.78765 -34.39889 -31.98376 -30.77880 -30.64460 -29.48863 -28.11039 -27.37246 -24.89681 -23.20979 -22.61721 -20.49433 -20.02036 -19.23693 -18.84029 -17.93787 -16.60092 -16.11290 -16.10331 -15.78606 -15.59739 -15.21708 -14.65773 -14.35143 -14.33078 -14.04321 -13.59745 -13.40998 -13.29924 -13.23290 -13.13842 -12.74298 -12.33458 -12.10095 -11.94546 -11.84400 -11.72337 -11.29153 -11.25609 -11.06186 -10.99930 -10.77063 -10.69585 -10.57148 -10.48098 -10.26593 -10.12396 -9.91582 -9.86702 -9.34922 -8.95738 -8.40805 -8.33003 -7.63428 -6.62652 -4.43921 0.19526 1.31237 1.61025 3.02723 3.11821 3.24413 3.31206 3.44514 3.95126 4.06201 4.13538 4.26635 4.46176 4.71375 4.72124 4.93589 5.21107 5.27071 5.29711 5.33531 5.49502 5.56177 5.68875 5.86562 5.93869 5.99267 6.15561 6.17322 6.20615 6.23058 6.26247 6.34092 6.39910 6.43776 6.48925 6.58043 6.85827 6.87660 6.97234 7.02603 7.04418 7.36623 7.55124 7.67798 8.25406 8.81436 9.06774 9.53123 10.42104 Molecular weight = 337.12amu Principal moments of inertia in cm(-1) A = 0.019291 B = 0.004433 C = 0.004189 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1451.124087 B = 6314.682204 C = 6682.521834 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.651 4.651 2 S 2.499 3.501 3 O -0.945 6.945 4 O -0.941 6.941 5 C -0.687 4.687 6 C -0.014 4.014 7 C -0.160 4.160 8 C 0.020 3.980 9 C -0.142 4.142 10 C 0.529 3.471 11 O -0.587 6.587 12 N -0.456 5.456 13 C -0.351 4.351 14 H 0.106 0.894 15 C 0.088 3.912 16 N -0.852 5.852 17 Si 0.832 3.168 18 H -0.246 1.246 19 H -0.284 1.284 20 H -0.256 1.256 21 C 0.131 3.869 22 C -0.127 4.127 23 C -0.117 4.117 24 C -0.117 4.117 25 C -0.124 4.124 26 C 0.020 3.980 27 H 0.131 0.869 28 H 0.126 0.874 29 H 0.132 0.868 30 H 0.133 0.867 31 H 0.130 0.870 32 H 0.178 0.822 33 H 0.279 0.721 34 H 0.082 0.918 35 H 0.056 0.944 36 H 0.070 0.930 37 H 0.085 0.915 38 H 0.050 0.950 39 H 0.058 0.942 40 H 0.053 0.947 41 H 0.075 0.925 42 H 0.054 0.946 43 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.210 1.226 -1.226 7.415 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.800 4.800 2 S 2.681 3.319 3 O -0.942 6.942 4 O -0.939 6.939 5 C -0.776 4.776 6 C -0.034 4.034 7 C -0.179 4.179 8 C 0.002 3.998 9 C -0.146 4.146 10 C 0.319 3.681 11 O -0.471 6.471 12 N -0.176 5.176 13 C -0.478 4.478 14 H 0.123 0.877 15 C -0.122 4.122 16 N -0.485 5.485 17 Si 0.657 3.343 18 H -0.170 1.170 19 H -0.210 1.210 20 H -0.180 1.180 21 C 0.027 3.973 22 C -0.165 4.165 23 C -0.155 4.155 24 C -0.155 4.155 25 C -0.162 4.162 26 C 0.000 4.000 27 H 0.149 0.851 28 H 0.145 0.855 29 H 0.151 0.849 30 H 0.151 0.849 31 H 0.148 0.852 32 H 0.195 0.805 33 H 0.089 0.911 34 H 0.101 0.899 35 H 0.075 0.925 36 H 0.089 0.911 37 H 0.104 0.896 38 H 0.068 0.932 39 H 0.077 0.923 40 H 0.072 0.928 41 H 0.094 0.906 42 H 0.073 0.927 43 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -6.835 1.244 -2.169 7.278 hybrid contribution 0.221 -0.149 -0.203 0.335 sum -6.614 1.094 -2.372 7.111 Atomic orbital electron populations 1.30233 1.26389 1.12126 1.11275 1.04992 0.77680 0.74533 0.74741 1.93551 1.77325 1.36816 1.86507 1.93576 1.77172 1.61499 1.61623 1.29993 1.23523 1.02605 1.21431 1.20948 0.92004 0.98497 0.91907 1.21283 1.03131 0.96337 0.97114 1.22748 0.83105 0.92097 1.01829 1.19964 1.05345 0.94748 0.94553 1.18500 0.80194 0.87369 0.82014 1.90630 1.49111 1.57057 1.50327 1.43585 1.35309 1.04834 1.33922 1.18789 1.26092 1.10708 0.92221 0.87695 1.25632 0.93614 0.95120 0.97866 1.69604 1.30374 1.11896 1.36667 0.87558 0.79493 0.80989 0.86279 1.17020 1.21049 1.17981 1.21690 0.95726 0.83548 0.96308 1.22625 0.96013 1.00248 0.97617 1.22480 0.96281 1.01734 0.94980 1.22255 0.95478 0.98723 0.98998 1.22395 0.96963 1.00409 0.96422 1.20805 0.89521 0.92853 0.96806 0.85065 0.85499 0.84892 0.84922 0.85196 0.80532 0.91071 0.89937 0.92514 0.91113 0.89630 0.93163 0.92310 0.92776 0.90644 0.92706 0.84458 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 37. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.65 -5.69 10.80 101.05 1.09 -4.60 16 2 S 2.50 35.55 5.80 -107.50 -0.62 34.93 16 3 O -0.94 -15.42 17.12 -57.54 -0.98 -16.41 16 4 O -0.94 -16.77 17.12 -57.54 -0.98 -17.75 16 5 C -0.69 -11.85 5.57 -39.64 -0.22 -12.07 16 6 C -0.01 -0.23 9.47 -39.48 -0.37 -0.61 16 7 C -0.16 -2.81 10.03 -39.64 -0.40 -3.20 16 8 C 0.02 0.41 6.57 -39.16 -0.26 0.15 16 9 C -0.14 -3.08 3.09 -104.97 -0.32 -3.40 16 10 C 0.53 12.39 5.96 -12.39 -0.07 12.31 16 11 O -0.59 -14.69 16.09 5.29 0.09 -14.60 16 12 N -0.46 -10.15 1.73 -107.65 -0.19 -10.33 16 13 C -0.35 -7.96 4.42 -15.00 -0.07 -8.03 16 14 H 0.11 2.49 7.43 -52.49 -0.39 2.10 16 15 C 0.09 2.09 3.13 -17.45 -0.05 2.04 16 16 N -0.85 -20.84 13.88 55.50 0.77 -20.07 16 17 Si 0.83 20.13 23.42 -169.99 -3.98 16.15 16 18 H -0.25 -5.99 4.99 56.52 0.28 -5.70 16 19 H -0.28 -7.00 7.11 56.52 0.40 -6.60 16 20 H -0.26 -6.37 6.06 56.52 0.34 -6.03 16 21 C 0.13 2.61 3.35 -66.81 -0.22 2.39 16 22 C -0.13 -2.39 6.10 -25.03 -0.15 -2.54 16 23 C -0.12 -1.98 6.56 -24.70 -0.16 -2.14 16 24 C -0.12 -1.77 6.83 -25.07 -0.17 -1.94 16 25 C -0.12 -2.10 6.27 -25.62 -0.16 -2.26 16 26 C 0.02 0.41 7.19 -39.17 -0.28 0.13 16 27 H 0.13 0.90 8.14 -51.92 -0.42 0.48 16 28 H 0.13 0.83 8.14 -51.93 -0.42 0.41 16 29 H 0.13 1.06 8.14 -51.93 -0.42 0.64 16 30 H 0.13 1.78 7.56 -52.49 -0.40 1.38 16 31 H 0.13 1.99 8.06 -52.49 -0.42 1.57 16 32 H 0.18 3.74 5.31 -52.48 -0.28 3.46 16 33 H 0.28 6.69 8.31 -40.82 -0.34 6.36 16 34 H 0.08 1.72 6.94 -51.93 -0.36 1.36 16 35 H 0.06 0.95 8.14 -51.93 -0.42 0.52 16 36 H 0.07 1.51 5.50 -51.93 -0.29 1.23 16 37 H 0.09 1.65 7.26 -51.93 -0.38 1.27 16 38 H 0.05 0.75 8.14 -51.93 -0.42 0.32 16 39 H 0.06 0.84 8.14 -51.92 -0.42 0.41 16 40 H 0.05 0.73 8.14 -51.93 -0.42 0.30 16 41 H 0.07 1.37 6.94 -51.93 -0.36 1.01 16 42 H 0.05 0.85 8.14 -51.93 -0.42 0.42 16 43 H 0.14 2.74 7.45 -52.49 -0.39 2.35 16 LS Contribution 344.52 15.07 5.19 5.19 Total: -1.00 -30.89 344.52 -8.50 -39.39 By element: Atomic # 1 Polarization: 13.23 SS G_CDS: -5.96 Total: 7.27 kcal Atomic # 6 Polarization: -21.94 SS G_CDS: -1.83 Total: -23.77 kcal Atomic # 7 Polarization: -30.98 SS G_CDS: 0.58 Total: -30.40 kcal Atomic # 8 Polarization: -46.88 SS G_CDS: -1.88 Total: -48.76 kcal Atomic # 14 Polarization: 20.13 SS G_CDS: -3.98 Total: 16.15 kcal Atomic # 16 Polarization: 35.55 SS G_CDS: -0.62 Total: 34.93 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -30.89 -8.50 -39.39 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000080212329.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.101 kcal (2) G-P(sol) polarization free energy of solvation -30.889 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.991 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.501 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.390 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.491 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.82 seconds