Wall clock time and date at job start Tue Mar 31 2020 05:53:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81403 * 1 3 3 O 1.42098 * 110.54244 * 2 1 4 4 O 1.42101 * 110.54115 * 223.24290 * 2 1 3 5 5 C 1.76211 * 104.44803 * 111.62084 * 2 1 3 6 6 C 1.38388 * 119.92122 * 269.97867 * 5 2 1 7 7 C 1.38362 * 120.30299 * 180.02562 * 6 5 2 8 8 C 1.37959 * 120.14792 * 359.69513 * 7 6 5 9 9 C 1.39629 * 119.84639 * 0.55363 * 8 7 6 10 10 C 1.47721 * 120.15066 * 179.74317 * 9 8 7 11 11 O 1.21585 * 119.99935 * 148.74181 * 10 9 8 12 12 N 1.34774 * 120.00277 * 328.74813 * 10 9 8 13 13 C 1.36877 * 119.99686 * 2.22607 * 12 10 9 14 14 H 1.08000 * 119.99971 * 120.80817 * 13 12 10 15 15 C 1.39053 * 119.99941 * 300.79720 * 13 12 10 16 16 N 1.31363 * 119.99808 * 169.86800 * 15 13 12 17 17 Si 1.86800 * 119.99941 * 349.86972 * 15 13 12 18 18 H 1.48507 * 109.46752 * 94.36786 * 17 15 13 19 19 H 1.48500 * 109.46986 * 214.36174 * 17 15 13 20 20 H 1.48495 * 109.47296 * 334.36685 * 17 15 13 21 21 C 1.46501 * 120.00478 * 182.22503 * 12 10 9 22 22 C 1.54266 * 110.03096 * 122.08864 * 21 12 10 23 23 C 1.54968 * 104.15878 * 95.76036 * 22 21 12 24 24 C 1.54887 * 102.77668 * 37.88779 * 23 22 21 25 25 C 1.53870 * 110.03589 * 239.30831 * 21 12 10 26 26 C 1.37914 * 119.92081 * 89.99918 * 5 2 1 27 27 H 1.09000 * 109.47241 * 308.37729 * 1 2 3 28 28 H 1.08997 * 109.46886 * 68.37808 * 1 2 3 29 29 H 1.08993 * 109.47279 * 188.37982 * 1 2 3 30 30 H 1.07996 * 119.85617 * 0.02562 * 6 5 2 31 31 H 1.07995 * 119.92411 * 179.97438 * 7 6 5 32 32 H 1.08003 * 120.07631 * 180.30457 * 8 7 6 33 33 H 0.96996 * 119.99470 * 180.02562 * 16 15 13 34 34 H 1.09006 * 110.01480 * 0.70106 * 21 12 10 35 35 H 1.09001 * 110.48789 * 214.40209 * 22 21 12 36 36 H 1.08999 * 110.49166 * 337.04751 * 22 21 12 37 37 H 1.09001 * 110.71655 * 279.56830 * 23 22 21 38 38 H 1.09003 * 110.92028 * 156.29740 * 23 22 21 39 39 H 1.09008 * 110.48178 * 203.40702 * 24 23 22 40 40 H 1.08992 * 110.60126 * 80.81730 * 24 23 22 41 41 H 1.09002 * 110.02964 * 359.95296 * 25 21 12 42 42 H 1.09000 * 110.03261 * 121.32869 * 25 21 12 43 43 H 1.08000 * 120.07972 * 359.97438 * 26 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.3127 1.3306 0.0000 4 8 2.3126 -0.9693 -0.9116 5 6 2.2537 -0.6287 1.5863 6 6 2.4263 0.2400 2.6496 7 6 2.7721 -0.2450 3.8984 8 6 2.9409 -1.6004 4.0929 9 6 2.7733 -2.4821 3.0233 10 6 2.9580 -3.9341 3.2227 11 8 2.3141 -4.7253 2.5611 12 7 3.8401 -4.3818 4.1380 13 6 4.5316 -3.4917 4.9146 14 1 4.4422 -3.5304 5.9902 15 6 5.3493 -2.5379 4.3187 16 7 5.8542 -1.5628 5.0398 17 14 5.7297 -2.6430 2.4929 18 1 4.7706 -1.7971 1.7380 19 1 7.1132 -2.1627 2.2471 20 1 5.6076 -4.0527 2.0422 21 6 4.0589 -5.8211 4.3018 22 6 5.5468 -6.1587 4.0736 23 6 6.1535 -6.1806 5.4994 24 6 5.0250 -6.8250 6.3420 25 6 3.7272 -6.2440 5.7436 26 6 2.4253 -1.9854 1.7652 27 1 -0.3634 0.6380 0.8056 28 1 -0.3633 0.3787 -0.9553 29 1 -0.3633 -1.0166 0.1498 30 1 2.2906 1.3015 2.5041 31 1 2.9057 0.4385 4.7238 32 1 3.2059 -1.9782 5.0694 33 1 6.4243 -0.8973 4.6240 34 1 3.4380 -6.3753 3.5978 35 1 5.6482 -7.1357 3.6011 36 1 6.0240 -5.3892 3.4668 37 1 6.3636 -5.1683 5.8446 38 1 7.0553 -6.7922 5.5293 39 1 5.1221 -6.5413 7.3901 40 1 5.0406 -7.9098 6.2383 41 1 3.4042 -5.3782 6.3217 42 1 2.9447 -7.0028 5.7394 43 1 2.2902 -2.6623 0.9345 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000080212329.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:53:10 Heat of formation + Delta-G solvation = -81.871493 kcal Electronic energy + Delta-G solvation = -28519.377433 eV Core-core repulsion = 24656.689032 eV Total energy + Delta-G solvation = -3862.688402 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 337.118 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.65146 -39.69107 -38.32489 -38.15597 -37.01327 -36.13859 -33.80461 -32.26163 -32.10032 -30.28439 -29.52961 -28.89589 -26.70825 -24.75084 -24.05480 -22.05301 -21.39034 -20.95340 -20.16315 -19.33539 -18.25681 -17.73072 -17.30257 -17.19237 -16.94445 -16.71076 -16.20063 -15.98936 -15.87502 -15.66819 -15.26483 -14.86285 -14.77316 -14.35741 -14.07235 -13.95920 -13.88583 -13.80771 -13.19420 -13.17301 -13.12221 -13.05970 -12.85421 -12.65302 -12.46619 -12.25761 -12.15054 -12.03440 -11.87138 -11.70645 -11.65570 -11.52782 -11.24921 -11.14994 -10.69804 -10.01882 -9.87681 -9.42491 -8.55541 -6.31018 -0.86538 -0.14824 0.09592 1.12216 1.23554 1.33268 1.77818 1.86638 2.11012 2.48121 2.73232 2.82406 3.04504 3.18036 3.75780 3.85206 3.86421 3.88631 4.10121 4.13715 4.16298 4.19526 4.40549 4.51659 4.59227 4.65924 4.73060 4.74021 4.79822 4.87996 4.92743 4.93515 5.00311 5.01762 5.16309 5.20035 5.39357 5.39976 5.48775 5.49152 5.66545 5.68637 5.85495 5.95428 6.37014 6.94098 7.23486 7.71491 8.52177 Molecular weight = 337.12amu Principal moments of inertia in cm(-1) A = 0.019291 B = 0.004433 C = 0.004189 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1451.124087 B = 6314.682204 C = 6682.521834 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.614 4.614 2 S 2.500 3.500 3 O -0.968 6.968 4 O -0.987 6.987 5 C -0.688 4.688 6 C -0.008 4.008 7 C -0.158 4.158 8 C 0.007 3.993 9 C -0.168 4.168 10 C 0.517 3.483 11 O -0.614 6.614 12 N -0.460 5.460 13 C -0.325 4.325 14 H 0.098 0.902 15 C 0.086 3.914 16 N -0.866 5.866 17 Si 0.847 3.153 18 H -0.250 1.250 19 H -0.293 1.293 20 H -0.274 1.274 21 C 0.118 3.882 22 C -0.129 4.129 23 C -0.112 4.112 24 C -0.106 4.106 25 C -0.118 4.118 26 C 0.001 3.999 27 H 0.163 0.837 28 H 0.161 0.839 29 H 0.147 0.853 30 H 0.170 0.830 31 H 0.155 0.845 32 H 0.161 0.839 33 H 0.278 0.722 34 H 0.069 0.931 35 H 0.079 0.921 36 H 0.038 0.962 37 H 0.057 0.943 38 H 0.075 0.925 39 H 0.071 0.929 40 H 0.081 0.919 41 H 0.060 0.940 42 H 0.073 0.927 43 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.803 2.014 -0.737 9.060 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.769 4.769 2 S 2.683 3.317 3 O -0.965 6.965 4 O -0.984 6.984 5 C -0.773 4.773 6 C -0.026 4.026 7 C -0.177 4.177 8 C -0.011 4.011 9 C -0.172 4.172 10 C 0.308 3.692 11 O -0.501 6.501 12 N -0.180 5.180 13 C -0.453 4.453 14 H 0.116 0.884 15 C -0.122 4.122 16 N -0.501 5.501 17 Si 0.674 3.326 18 H -0.175 1.175 19 H -0.219 1.219 20 H -0.200 1.200 21 C 0.015 3.985 22 C -0.167 4.167 23 C -0.150 4.150 24 C -0.143 4.143 25 C -0.156 4.156 26 C -0.019 4.019 27 H 0.181 0.819 28 H 0.179 0.821 29 H 0.165 0.835 30 H 0.188 0.812 31 H 0.173 0.827 32 H 0.179 0.821 33 H 0.089 0.911 34 H 0.087 0.913 35 H 0.098 0.902 36 H 0.057 0.943 37 H 0.075 0.925 38 H 0.094 0.906 39 H 0.090 0.910 40 H 0.100 0.900 41 H 0.079 0.921 42 H 0.091 0.909 43 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -8.351 2.014 -1.631 8.743 hybrid contribution 0.569 -0.362 -0.457 0.814 sum -7.782 1.652 -2.087 8.225 Atomic orbital electron populations 1.29964 1.18049 1.14243 1.14613 1.05054 0.80769 0.73069 0.72768 1.93516 1.79962 1.36973 1.86061 1.93523 1.80223 1.62561 1.62130 1.30548 1.21951 1.01375 1.23448 1.21407 0.90095 1.00175 0.90952 1.21582 1.01994 0.95459 0.98624 1.22548 0.84683 0.93266 1.00584 1.19958 1.07489 0.93898 0.95866 1.18958 0.80023 0.88371 0.81838 1.90582 1.50219 1.58010 1.51306 1.43743 1.34840 1.05905 1.33485 1.18548 1.24801 1.10329 0.91633 0.88430 1.25581 0.94091 0.95433 0.97144 1.69598 1.31519 1.12460 1.36528 0.87407 0.78584 0.79613 0.87023 1.17476 1.21950 1.19968 1.21952 0.96416 0.82013 0.98078 1.22648 0.94987 1.00303 0.98738 1.22408 0.97999 1.00906 0.93677 1.22227 0.92983 1.00051 0.99059 1.22351 0.98793 1.00448 0.94036 1.20832 0.90718 0.94313 0.96024 0.81917 0.82082 0.83484 0.81239 0.82746 0.82148 0.91085 0.91307 0.90241 0.94333 0.92450 0.90643 0.91004 0.90030 0.92115 0.90866 0.85574 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.61 -7.79 10.80 113.37 1.22 -6.57 16 2 S 2.50 66.72 5.80 -56.49 -0.33 66.40 16 3 O -0.97 -29.60 17.12 -127.65 -2.18 -31.78 16 4 O -0.99 -35.22 17.12 -127.65 -2.19 -37.40 16 5 C -0.69 -23.08 5.57 22.23 0.12 -22.96 16 6 C -0.01 -0.23 9.47 22.34 0.21 -0.02 16 7 C -0.16 -5.35 10.03 22.23 0.22 -5.13 16 8 C 0.01 0.30 6.57 22.54 0.15 0.45 16 9 C -0.17 -7.50 3.09 -20.09 -0.06 -7.57 16 10 C 0.52 25.22 5.96 86.75 0.52 25.74 16 11 O -0.61 -32.17 16.09 -3.98 -0.06 -32.23 16 12 N -0.46 -21.17 1.73 -612.75 -1.06 -22.23 16 13 C -0.33 -15.17 4.42 84.10 0.37 -14.80 16 14 H 0.10 4.74 7.43 -2.91 -0.02 4.72 16 15 C 0.09 4.18 3.13 84.96 0.27 4.45 16 16 N -0.87 -42.78 13.88 21.68 0.30 -42.48 16 17 Si 0.85 42.43 23.42 68.60 1.61 44.04 16 18 H -0.25 -12.62 4.99 99.48 0.50 -12.13 16 19 H -0.29 -14.82 7.11 99.48 0.71 -14.12 16 20 H -0.27 -14.47 6.06 99.48 0.60 -13.87 16 21 C 0.12 4.80 3.35 45.71 0.15 4.96 16 22 C -0.13 -4.86 6.10 31.70 0.19 -4.67 16 23 C -0.11 -3.67 6.56 31.91 0.21 -3.46 16 24 C -0.11 -2.94 6.83 31.67 0.22 -2.73 16 25 C -0.12 -3.92 6.27 31.32 0.20 -3.72 16 26 C 0.00 0.05 7.19 22.54 0.16 0.21 16 27 H 0.16 1.23 8.14 -2.39 -0.02 1.22 16 28 H 0.16 1.17 8.14 -2.39 -0.02 1.15 16 29 H 0.15 1.69 8.14 -2.39 -0.02 1.67 16 30 H 0.17 3.91 7.56 -2.91 -0.02 3.89 16 31 H 0.15 4.39 8.06 -2.91 -0.02 4.37 16 32 H 0.16 6.97 5.31 -2.91 -0.02 6.95 16 33 H 0.28 13.48 8.31 -92.71 -0.77 12.71 16 34 H 0.07 2.95 6.94 -2.38 -0.02 2.93 16 35 H 0.08 2.59 8.14 -2.39 -0.02 2.57 16 36 H 0.04 1.69 5.50 -2.39 -0.01 1.68 16 37 H 0.06 2.20 7.26 -2.39 -0.02 2.18 16 38 H 0.07 2.08 8.14 -2.39 -0.02 2.06 16 39 H 0.07 1.85 8.14 -2.38 -0.02 1.83 16 40 H 0.08 1.88 8.14 -2.39 -0.02 1.86 16 41 H 0.06 2.19 6.94 -2.39 -0.02 2.17 16 42 H 0.07 2.15 8.14 -2.39 -0.02 2.13 16 43 H 0.13 5.32 7.45 -2.91 -0.02 5.30 16 Total: -1.00 -71.16 344.52 0.95 -70.21 By element: Atomic # 1 Polarization: 20.58 SS G_CDS: 0.71 Total: 21.29 kcal Atomic # 6 Polarization: -39.96 SS G_CDS: 4.15 Total: -35.80 kcal Atomic # 7 Polarization: -63.95 SS G_CDS: -0.76 Total: -64.71 kcal Atomic # 8 Polarization: -96.98 SS G_CDS: -4.43 Total: -101.42 kcal Atomic # 14 Polarization: 42.43 SS G_CDS: 1.61 Total: 44.04 kcal Atomic # 16 Polarization: 66.72 SS G_CDS: -0.33 Total: 66.40 kcal Total: -71.16 0.95 -70.21 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000080212329.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.666 kcal (2) G-P(sol) polarization free energy of solvation -71.156 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.822 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.950 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.206 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.871 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds