Wall clock time and date at job start Tue Mar 31 2020 05:50:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86796 * 119.99760 * 2 1 4 4 H 1.48500 * 109.47249 * 270.00299 * 3 2 1 5 5 H 1.48503 * 109.47187 * 30.00163 * 3 2 1 6 6 H 1.48497 * 109.46835 * 150.00253 * 3 2 1 7 7 C 1.37871 * 120.00068 * 180.02562 * 2 1 3 8 8 H 1.08009 * 120.00251 * 359.97438 * 7 2 1 9 9 C 1.50700 * 120.00236 * 179.97438 * 7 2 1 10 10 N 1.46496 * 109.47171 * 180.02562 * 9 7 2 11 11 C 1.46502 * 120.00211 * 90.00319 * 10 9 7 12 12 C 1.52998 * 109.47001 * 85.38106 * 11 10 9 13 13 F 1.39891 * 109.47502 * 60.00163 * 12 11 10 14 14 F 1.39904 * 109.46853 * 180.02562 * 12 11 10 15 15 F 1.39898 * 109.46980 * 299.99488 * 12 11 10 16 16 C 1.34780 * 120.00061 * 269.99696 * 10 9 7 17 17 O 1.21606 * 119.99575 * 4.46285 * 16 10 9 18 18 C 1.47460 * 120.00283 * 184.46019 * 16 10 9 19 19 C 1.38718 * 120.37755 * 301.07712 * 18 16 10 20 20 C 1.38902 * 120.64956 * 180.02562 * 19 18 16 21 21 C 1.36279 * 121.17931 * 0.02562 * 20 19 18 22 22 C 1.40556 * 120.12640 * 359.97438 * 21 20 19 23 23 C 1.40580 * 121.16681 * 179.97438 * 22 21 20 24 24 C 1.36133 * 119.65584 * 180.02562 * 23 22 21 25 25 C 1.39304 * 120.94887 * 0.02818 * 24 23 22 26 26 C 1.36257 * 120.93605 * 359.97438 * 25 24 23 27 27 C 1.40146 * 119.68702 * 359.72370 * 26 25 24 28 28 H 0.97001 * 120.00617 * 359.97438 * 1 2 3 29 29 H 1.08999 * 109.46714 * 59.99798 * 9 7 2 30 30 H 1.09006 * 109.46720 * 299.99997 * 9 7 2 31 31 H 1.08999 * 109.46593 * 325.37864 * 11 10 9 32 32 H 1.09004 * 109.47049 * 205.37807 * 11 10 9 33 33 H 1.08005 * 119.67040 * 0.02562 * 19 18 16 34 34 H 1.08005 * 119.40852 * 179.97438 * 20 19 18 35 35 H 1.08003 * 119.94154 * 179.97438 * 21 20 19 36 36 H 1.07998 * 120.16940 * 359.97438 * 23 22 21 37 37 H 1.07996 * 119.52649 * 180.02562 * 24 23 22 38 38 H 1.07992 * 119.53214 * 179.97438 * 25 24 23 39 39 H 1.07990 * 120.15971 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4465 2.6527 0.7001 6 1 3.5466 1.4401 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5115 -1.1940 -0.0011 10 7 3.9998 -2.5752 -0.0022 11 6 4.2436 -3.2650 -1.2715 12 6 5.6504 -2.9310 -1.7715 13 9 6.5928 -3.3483 -0.8256 14 9 5.8830 -3.5893 -2.9839 15 9 5.7616 -1.5496 -1.9627 16 6 4.2250 -3.2114 1.1645 17 8 3.9464 -2.6686 2.2165 18 6 4.8090 -4.5654 1.1653 19 6 4.1685 -5.6060 0.5087 20 6 4.7133 -6.8837 0.5064 21 6 5.8865 -7.1517 1.1459 22 6 6.5700 -6.1278 1.8242 23 6 7.7814 -6.3799 2.4915 24 6 8.4174 -5.3654 3.1392 25 6 7.8849 -4.0782 3.1515 26 6 6.7130 -3.7988 2.5152 27 6 6.0338 -4.8172 1.8327 28 1 -0.4851 0.8400 0.0004 29 1 3.8751 -0.6804 0.8888 30 1 3.8745 -0.6800 -0.8912 31 1 3.5093 -2.9399 -2.0085 32 1 4.1569 -4.3413 -1.1226 33 1 3.2370 -5.4208 -0.0057 34 1 4.1974 -7.6793 -0.0109 35 1 6.2918 -8.1527 1.1316 36 1 8.2048 -7.3735 2.4910 37 1 9.3481 -5.5613 3.6508 38 1 8.4085 -3.2906 3.6729 39 1 6.3118 -2.7964 2.5324 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000080826948.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:50:46 Heat of formation + Delta-G solvation = -131.338721 kcal Electronic energy + Delta-G solvation = -30133.982100 eV Core-core repulsion = 25591.847947 eV Total energy + Delta-G solvation = -4542.134153 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 337.103 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -49.86620 -47.40885 -47.32240 -40.72853 -38.94303 -36.43802 -35.48555 -33.00614 -32.47209 -30.42866 -29.86335 -29.27629 -27.53266 -24.29015 -23.38417 -23.11235 -22.86401 -21.70433 -19.35800 -18.38415 -18.32973 -17.77056 -17.63733 -16.92511 -16.62411 -16.29411 -15.97107 -15.59502 -14.63972 -14.37962 -14.31681 -14.23874 -13.96697 -13.81719 -13.77213 -13.62496 -13.51831 -13.44088 -13.39778 -13.11062 -12.85281 -12.53682 -12.37587 -12.11369 -11.97957 -11.70347 -11.29094 -11.17623 -11.09209 -10.99720 -10.63581 -10.23128 -9.97356 -9.66695 -9.35252 -8.67233 -8.66739 -8.19629 -7.88185 -6.16893 -4.17501 0.34876 0.96372 1.88970 2.72033 2.86328 3.22329 3.23651 3.27489 3.35322 3.37363 4.02345 4.09344 4.21752 4.28227 4.33338 4.58855 4.73987 4.77619 4.85962 4.98770 5.03734 5.14456 5.16538 5.29167 5.34103 5.39175 5.48265 5.62611 5.88138 6.00975 6.08665 6.15985 6.29035 6.44905 6.48113 6.56540 6.71422 6.80895 6.92498 6.95409 7.46935 7.77073 8.32184 8.56061 8.84368 9.41903 10.95894 Molecular weight = 337.10amu Principal moments of inertia in cm(-1) A = 0.013523 B = 0.004556 C = 0.004255 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2070.010971 B = 6144.100927 C = 6579.576087 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.077 3.923 3 Si 0.871 3.129 4 H -0.273 1.273 5 H -0.282 1.282 6 H -0.263 1.263 7 C -0.534 4.534 8 H 0.077 0.923 9 C 0.211 3.789 10 N -0.583 5.583 11 C 0.061 3.939 12 C 0.429 3.571 13 F -0.180 7.180 14 F -0.186 7.186 15 F -0.179 7.179 16 C 0.560 3.440 17 O -0.506 6.506 18 C -0.099 4.099 19 C -0.098 4.098 20 C -0.116 4.116 21 C -0.094 4.094 22 C -0.052 4.052 23 C -0.111 4.111 24 C -0.114 4.114 25 C -0.118 4.118 26 C -0.092 4.092 27 C -0.013 4.013 28 H 0.266 0.734 29 H 0.046 0.954 30 H 0.037 0.963 31 H 0.132 0.868 32 H 0.122 0.878 33 H 0.135 0.865 34 H 0.130 0.870 35 H 0.129 0.871 36 H 0.127 0.873 37 H 0.122 0.878 38 H 0.123 0.877 39 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.434 -13.905 -1.184 20.808 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.126 4.126 3 Si 0.697 3.303 4 H -0.198 1.198 5 H -0.208 1.208 6 H -0.188 1.188 7 C -0.573 4.573 8 H 0.095 0.905 9 C 0.092 3.908 10 N -0.314 5.314 11 C -0.066 4.066 12 C 0.373 3.627 13 F -0.162 7.162 14 F -0.168 7.168 15 F -0.160 7.160 16 C 0.346 3.654 17 O -0.381 6.381 18 C -0.103 4.103 19 C -0.116 4.116 20 C -0.134 4.134 21 C -0.113 4.113 22 C -0.052 4.052 23 C -0.129 4.129 24 C -0.132 4.132 25 C -0.136 4.136 26 C -0.110 4.110 27 C -0.014 4.014 28 H 0.076 0.924 29 H 0.064 0.936 30 H 0.055 0.945 31 H 0.150 0.850 32 H 0.140 0.860 33 H 0.153 0.847 34 H 0.148 0.852 35 H 0.147 0.853 36 H 0.145 0.855 37 H 0.140 0.860 38 H 0.141 0.859 39 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 15.123 -13.423 -0.594 20.229 hybrid contribution 0.484 0.978 -0.218 1.113 sum 15.607 -12.445 -0.812 19.978 Atomic orbital electron populations 1.69878 1.06170 1.27191 1.49796 1.24802 0.94744 0.98892 0.94168 0.86922 0.80668 0.83896 0.78800 1.19834 1.20768 1.18776 1.21225 0.88647 0.95062 1.52323 0.90451 1.19938 0.96254 0.76181 0.98416 1.47804 1.64357 1.16415 1.02789 1.22954 0.91054 1.01850 0.90779 1.21589 0.90994 0.74828 0.75332 1.93199 1.68452 1.89926 1.64623 1.93157 1.95668 1.81140 1.46826 1.93191 1.96803 1.30979 1.95041 1.18103 0.78153 0.84958 0.84139 1.90828 1.50189 1.66680 1.30354 1.20171 0.95745 0.94557 0.99797 1.21327 0.99875 0.92526 0.97905 1.20733 0.96233 0.96404 1.00046 1.21103 0.95179 0.98348 0.96620 1.18008 0.95652 0.92617 0.98897 1.20971 0.94467 0.99387 0.98086 1.20849 0.99928 0.93058 0.99321 1.20884 0.96028 0.96927 0.99759 1.21185 0.94723 0.99353 0.95701 1.17741 0.93364 0.93295 0.96986 0.92384 0.93558 0.94527 0.85013 0.85993 0.84726 0.85231 0.85346 0.85544 0.86012 0.85878 0.85076 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.74 13.96 55.43 0.77 -25.97 16 2 C 0.08 2.18 5.47 -17.82 -0.10 2.09 16 3 Si 0.87 21.06 27.47 -169.99 -4.67 16.39 16 4 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 5 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 6 H -0.26 -6.23 6.54 56.52 0.37 -5.86 16 7 C -0.53 -14.68 9.94 -34.44 -0.34 -15.02 16 8 H 0.08 2.30 8.06 -52.48 -0.42 1.88 16 9 C 0.21 4.98 3.98 -5.20 -0.02 4.96 16 10 N -0.58 -11.59 2.37 -176.31 -0.42 -12.01 16 11 C 0.06 0.94 5.31 -4.04 -0.02 0.91 16 12 C 0.43 6.55 3.29 37.16 0.12 6.67 16 13 F -0.18 -2.88 15.70 2.25 0.04 -2.85 16 14 F -0.19 -2.58 17.32 2.25 0.04 -2.54 16 15 F -0.18 -3.04 15.80 2.25 0.04 -3.01 16 16 C 0.56 11.35 6.06 -12.50 -0.08 11.28 16 17 O -0.51 -12.23 15.69 5.27 0.08 -12.15 16 18 C -0.10 -1.64 4.02 -104.63 -0.42 -2.06 16 19 C -0.10 -1.31 7.56 -39.16 -0.30 -1.61 16 20 C -0.12 -1.24 9.92 -40.04 -0.40 -1.64 16 21 C -0.09 -1.00 9.75 -39.41 -0.38 -1.39 16 22 C -0.05 -0.66 5.74 -106.85 -0.61 -1.28 16 23 C -0.11 -1.19 9.77 -39.46 -0.39 -1.58 16 24 C -0.11 -1.21 9.95 -39.94 -0.40 -1.61 16 25 C -0.12 -1.48 9.95 -39.90 -0.40 -1.88 16 26 C -0.09 -1.43 9.26 -39.58 -0.37 -1.80 16 27 C -0.01 -0.21 5.45 -106.56 -0.58 -0.79 16 28 H 0.27 7.47 8.31 -40.82 -0.34 7.13 16 29 H 0.05 1.18 6.55 -51.93 -0.34 0.84 16 30 H 0.04 0.82 6.27 -51.93 -0.33 0.50 16 31 H 0.13 1.91 8.11 -51.93 -0.42 1.49 16 32 H 0.12 1.57 4.17 -51.93 -0.22 1.35 16 33 H 0.14 1.65 7.24 -52.48 -0.38 1.27 16 34 H 0.13 0.99 8.06 -52.48 -0.42 0.57 16 35 H 0.13 0.95 8.06 -52.48 -0.42 0.53 16 36 H 0.13 0.97 8.06 -52.49 -0.42 0.55 16 37 H 0.12 0.94 8.06 -52.49 -0.42 0.52 16 38 H 0.12 1.27 8.06 -52.49 -0.42 0.85 16 39 H 0.13 2.27 6.58 -52.49 -0.35 1.93 16 LS Contribution 340.03 15.07 5.12 5.12 Total: -1.00 -33.15 340.03 -7.40 -40.56 By element: Atomic # 1 Polarization: 4.91 SS G_CDS: -3.73 Total: 1.17 kcal Atomic # 6 Polarization: -0.05 SS G_CDS: -4.67 Total: -4.73 kcal Atomic # 7 Polarization: -38.33 SS G_CDS: 0.35 Total: -37.98 kcal Atomic # 8 Polarization: -12.23 SS G_CDS: 0.08 Total: -12.15 kcal Atomic # 9 Polarization: -8.50 SS G_CDS: 0.11 Total: -8.39 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -4.67 Total: 16.39 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -33.15 -7.40 -40.56 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000080826948.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -90.784 kcal (2) G-P(sol) polarization free energy of solvation -33.152 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.935 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.403 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.555 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.339 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds