Wall clock time and date at job start Tue Mar 31 2020 05:26:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31419 * 1 3 3 Si 1.86797 * 119.99880 * 2 1 4 4 H 1.48502 * 109.46917 * 179.97438 * 3 2 1 5 5 H 1.48503 * 109.47346 * 299.99367 * 3 2 1 6 6 H 1.48495 * 109.47369 * 59.99865 * 3 2 1 7 7 C 1.38943 * 119.99702 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00141 * 180.02562 * 7 2 1 9 9 N 1.37099 * 120.00096 * 0.02562 * 7 2 1 10 10 C 1.34776 * 119.99838 * 179.97438 * 9 7 2 11 11 O 1.21291 * 120.00458 * 0.02562 * 10 9 7 12 12 C 1.50708 * 120.00044 * 179.97438 * 10 9 7 13 13 N 1.46495 * 109.47221 * 179.97438 * 12 10 9 14 14 C 1.39681 * 120.00200 * 90.00185 * 13 12 10 15 15 C 1.38904 * 120.07581 * 173.76304 * 14 13 12 16 16 C 1.38103 * 119.92411 * 179.79137 * 15 14 13 17 17 C 1.38284 * 120.07328 * 0.46315 * 16 15 14 18 18 C 1.38287 * 120.15046 * 359.78802 * 17 16 15 19 19 C 1.38103 * 120.07659 * 359.97438 * 18 17 16 20 20 C 1.46504 * 120.00265 * 270.00044 * 13 12 10 21 21 C 1.54344 * 110.81921 * 47.32329 * 20 13 12 22 22 C 1.51364 * 105.17200 * 215.42826 * 21 20 13 23 23 C 1.38497 * 130.39348 * 197.19053 * 22 21 20 24 24 C 1.38108 * 120.21739 * 179.97438 * 23 22 21 25 25 C 1.38264 * 119.93028 * 0.02562 * 24 23 22 26 26 C 1.38103 * 119.93459 * 359.97438 * 25 24 23 27 27 C 1.38225 * 109.75872 * 17.19111 * 22 21 20 28 28 C 1.51367 * 109.75581 * 359.97438 * 27 22 21 29 29 H 0.97002 * 119.99668 * 0.02562 * 1 2 3 30 30 H 0.96997 * 120.00455 * 0.02562 * 9 7 2 31 31 H 1.08996 * 109.46963 * 59.99829 * 12 10 9 32 32 H 1.08996 * 109.46811 * 300.00079 * 12 10 9 33 33 H 1.07998 * 120.04065 * 0.02562 * 15 14 13 34 34 H 1.08004 * 119.96738 * 180.22691 * 16 15 14 35 35 H 1.08009 * 119.92589 * 179.76779 * 17 16 15 36 36 H 1.08001 * 119.96359 * 179.97438 * 18 17 16 37 37 H 1.07998 * 120.03832 * 179.97438 * 19 18 17 38 38 H 1.08998 * 110.73206 * 170.94384 * 20 13 12 39 39 H 1.09003 * 110.30726 * 334.35139 * 21 20 13 40 40 H 1.09005 * 110.30457 * 96.50583 * 21 20 13 41 41 H 1.07999 * 119.89354 * 0.02562 * 23 22 21 42 42 H 1.08000 * 120.03483 * 179.97438 * 24 23 22 43 43 H 1.08002 * 120.02873 * 179.97438 * 25 24 23 44 44 H 1.08001 * 119.88841 * 180.02562 * 26 25 24 45 45 H 1.08993 * 110.30844 * 223.89011 * 28 27 22 46 46 H 1.09007 * 110.38562 * 101.77994 * 28 27 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 3.7082 1.3463 0.0006 5 1 1.8895 2.3964 -1.2126 6 1 1.8894 2.3965 1.2124 7 6 2.0088 -1.2033 0.0005 8 1 3.0889 -1.2034 0.0010 9 7 1.3233 -2.3906 0.0005 10 6 1.9972 -3.5578 0.0005 11 8 3.2101 -3.5579 0.0010 12 6 1.2436 -4.8630 0.0011 13 7 2.1956 -5.9765 0.0004 14 6 2.6504 -6.5074 1.2097 15 6 3.4497 -7.6433 1.2144 16 6 3.9012 -8.1631 2.4116 17 6 3.5504 -7.5595 3.6053 18 6 2.7504 -6.4315 3.6045 19 6 2.2995 -5.9036 2.4106 20 6 2.6707 -6.5333 -1.2687 21 6 3.1040 -5.4089 -2.2331 22 6 2.7142 -5.8973 -3.6117 23 6 3.1260 -5.4726 -4.8640 24 6 2.6276 -6.0768 -6.0015 25 6 1.7141 -7.1087 -5.8907 26 6 1.3022 -7.5335 -4.6428 27 6 1.8009 -6.9289 -3.5011 28 6 1.5150 -7.2046 -2.0404 29 1 -0.4850 0.8401 -0.0004 30 1 0.3533 -2.3906 -0.0002 31 1 0.6166 -4.9209 -0.8886 32 1 0.6174 -4.9204 0.8913 33 1 3.7210 -8.1174 0.2827 34 1 4.5258 -9.0442 2.4159 35 1 3.9017 -7.9702 4.5404 36 1 2.4780 -5.9628 4.5385 37 1 1.6745 -5.0229 2.4107 38 1 3.4846 -7.2383 -1.1001 39 1 2.5777 -4.4840 -1.9967 40 1 4.1819 -5.2566 -2.1766 41 1 3.8399 -4.6669 -4.9513 42 1 2.9505 -5.7431 -6.9766 43 1 1.3229 -7.5820 -6.7792 44 1 0.5889 -8.3399 -4.5572 45 1 1.5076 -8.2782 -1.8525 46 1 0.5611 -6.7640 -1.7505 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000081639764.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:26:46 Heat of formation + Delta-G solvation = 32.118042 kcal Electronic energy + Delta-G solvation = -28697.860148 eV Core-core repulsion = 24938.222508 eV Total energy + Delta-G solvation = -3759.637639 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 336.158 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.47393 -39.17290 -38.04712 -36.45086 -34.12360 -33.70808 -31.35790 -31.31748 -30.76249 -29.65803 -28.59346 -27.17774 -26.37392 -24.52283 -22.82485 -21.87768 -21.25454 -20.86911 -20.09232 -18.99395 -17.98926 -17.68743 -16.27319 -16.12990 -15.67668 -15.50594 -15.17345 -14.94156 -14.52642 -14.23001 -14.00801 -13.81374 -13.56520 -13.44351 -13.10762 -13.09235 -12.88235 -12.62909 -12.61761 -12.25819 -12.11645 -11.61158 -11.47890 -11.45329 -11.16502 -11.14479 -11.01404 -10.96324 -10.70780 -10.43314 -10.37319 -10.26025 -9.72156 -9.53996 -8.76091 -8.62680 -8.45883 -8.39964 -8.00340 -6.95900 -6.45173 -3.86513 1.39439 1.43927 1.74084 1.91837 3.13071 3.21759 3.25191 3.32424 3.78822 3.83624 4.14573 4.18832 4.49040 4.72714 4.89638 4.98771 5.04387 5.05858 5.12882 5.17835 5.23708 5.24961 5.32845 5.45287 5.53800 5.59113 5.64262 5.71772 5.75322 5.81554 5.83990 5.91907 5.99665 6.02241 6.12882 6.20839 6.25073 6.31854 6.45350 6.47729 6.53832 6.61014 6.74408 6.77239 6.91646 7.05218 7.16018 7.51124 7.51691 7.81586 8.01691 8.56229 9.13915 9.48711 9.99419 10.71667 Molecular weight = 336.16amu Principal moments of inertia in cm(-1) A = 0.006896 B = 0.004846 C = 0.003072 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4059.189808 B = 5775.979366 C = 9112.303835 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.024 3.976 3 Si 0.927 3.073 4 H -0.268 1.268 5 H -0.281 1.281 6 H -0.281 1.281 7 C -0.298 4.298 8 H 0.103 0.897 9 N -0.562 5.562 10 C 0.418 3.582 11 O -0.576 6.576 12 C 0.106 3.894 13 N -0.591 5.591 14 C 0.236 3.764 15 C -0.203 4.203 16 C -0.077 4.077 17 C -0.189 4.189 18 C -0.073 4.073 19 C -0.185 4.185 20 C 0.161 3.839 21 C -0.093 4.093 22 C -0.084 4.084 23 C -0.107 4.107 24 C -0.121 4.121 25 C -0.127 4.127 26 C -0.107 4.107 27 C -0.098 4.098 28 C -0.096 4.096 29 H 0.271 0.729 30 H 0.392 0.608 31 H 0.088 0.912 32 H 0.091 0.909 33 H 0.118 0.882 34 H 0.114 0.886 35 H 0.112 0.888 36 H 0.116 0.884 37 H 0.120 0.880 38 H 0.100 0.900 39 H 0.102 0.898 40 H 0.079 0.921 41 H 0.120 0.880 42 H 0.121 0.879 43 H 0.120 0.880 44 H 0.117 0.883 45 H 0.076 0.924 46 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.854 -16.284 -4.217 16.843 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.178 4.178 3 Si 0.754 3.246 4 H -0.193 1.193 5 H -0.207 1.207 6 H -0.207 1.207 7 C -0.427 4.427 8 H 0.121 0.879 9 N -0.199 5.199 10 C 0.202 3.798 11 O -0.460 6.460 12 C -0.021 4.021 13 N -0.298 5.298 14 C 0.134 3.866 15 C -0.225 4.225 16 C -0.096 4.096 17 C -0.209 4.209 18 C -0.092 4.092 19 C -0.207 4.207 20 C 0.056 3.944 21 C -0.131 4.131 22 C -0.084 4.084 23 C -0.125 4.125 24 C -0.139 4.139 25 C -0.145 4.145 26 C -0.125 4.125 27 C -0.099 4.099 28 C -0.134 4.134 29 H 0.081 0.919 30 H 0.225 0.775 31 H 0.106 0.894 32 H 0.109 0.891 33 H 0.136 0.864 34 H 0.132 0.868 35 H 0.130 0.870 36 H 0.134 0.866 37 H 0.138 0.862 38 H 0.118 0.882 39 H 0.120 0.880 40 H 0.098 0.902 41 H 0.138 0.862 42 H 0.139 0.861 43 H 0.138 0.862 44 H 0.135 0.865 45 H 0.095 0.905 46 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 1.478 -16.044 -4.364 16.693 hybrid contribution -0.234 1.141 -0.137 1.173 sum 1.244 -14.904 -4.501 15.618 Atomic orbital electron populations 1.69618 1.05920 1.28101 1.50460 1.25248 0.95605 0.99692 0.97249 0.85833 0.79735 0.81243 0.77752 1.19253 1.20739 1.20710 1.19725 0.93335 0.82181 1.47499 0.87932 1.41924 1.09182 1.04674 1.64094 1.20469 0.88983 0.85215 0.85119 1.90556 1.13481 1.86921 1.55023 1.21216 0.91292 0.86180 1.03414 1.45975 1.47483 1.34193 1.02153 1.17753 0.91991 0.91273 0.85587 1.20613 1.04945 0.98578 0.98376 1.20773 0.98003 0.98692 0.92116 1.20794 1.03684 0.98842 0.97554 1.20852 0.96036 0.95195 0.97136 1.20726 1.06542 1.02227 0.91250 1.21503 0.95376 0.94623 0.82887 1.21526 1.02960 0.99776 0.88832 1.20704 0.96769 0.95954 0.94998 1.20684 1.00479 1.00063 0.91279 1.21016 0.97903 0.96841 0.98094 1.20971 0.98606 0.97979 0.96983 1.20568 1.00313 1.00180 0.91485 1.20497 0.97628 0.96939 0.94798 1.21510 1.00171 1.01383 0.90364 0.91885 0.77525 0.89379 0.89115 0.86430 0.86760 0.87036 0.86576 0.86166 0.88250 0.87975 0.90203 0.86199 0.86120 0.86196 0.86495 0.90511 0.89623 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.05 13.05 55.50 0.72 -23.33 16 2 C 0.02 0.63 5.50 -17.47 -0.10 0.53 16 3 Si 0.93 20.87 29.55 -169.99 -5.02 15.84 16 4 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 5 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 6 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 7 C -0.30 -8.09 9.68 -14.94 -0.14 -8.23 16 8 H 0.10 2.96 7.16 -52.48 -0.38 2.58 16 9 N -0.56 -13.68 5.29 -10.96 -0.06 -13.73 16 10 C 0.42 9.29 6.24 -10.98 -0.07 9.23 16 11 O -0.58 -14.76 14.60 5.55 0.08 -14.68 16 12 C 0.11 1.81 4.62 -5.19 -0.02 1.78 16 13 N -0.59 -9.49 2.16 -163.95 -0.35 -9.84 16 14 C 0.24 3.85 6.53 -83.78 -0.55 3.30 16 15 C -0.20 -2.92 9.25 -39.38 -0.36 -3.29 16 16 C -0.08 -1.01 10.04 -39.61 -0.40 -1.41 16 17 C -0.19 -2.52 10.04 -39.55 -0.40 -2.91 16 18 C -0.07 -1.07 10.04 -39.61 -0.40 -1.47 16 19 C -0.19 -3.07 9.16 -39.38 -0.36 -3.43 16 20 C 0.16 2.32 3.34 -66.53 -0.22 2.10 16 21 C -0.09 -1.53 5.51 -26.85 -0.15 -1.68 16 22 C -0.08 -1.23 6.14 -104.21 -0.64 -1.87 16 23 C -0.11 -1.46 10.04 -39.53 -0.40 -1.85 16 24 C -0.12 -1.41 10.05 -39.62 -0.40 -1.81 16 25 C -0.13 -1.40 10.05 -39.62 -0.40 -1.80 16 26 C -0.11 -1.25 10.04 -39.54 -0.40 -1.65 16 27 C -0.10 -1.30 6.14 -104.21 -0.64 -1.94 16 28 C -0.10 -1.19 6.33 -26.86 -0.17 -1.36 16 29 H 0.27 6.87 8.31 -40.82 -0.34 6.54 16 30 H 0.39 9.16 7.90 -40.82 -0.32 8.84 16 31 H 0.09 1.36 6.85 -51.93 -0.36 1.00 16 32 H 0.09 1.41 6.47 -51.93 -0.34 1.07 16 33 H 0.12 1.50 5.92 -52.49 -0.31 1.19 16 34 H 0.11 1.19 8.06 -52.48 -0.42 0.77 16 35 H 0.11 1.22 8.06 -52.48 -0.42 0.80 16 36 H 0.12 1.46 8.06 -52.49 -0.42 1.04 16 37 H 0.12 2.07 6.26 -52.49 -0.33 1.75 16 38 H 0.10 1.35 5.61 -51.93 -0.29 1.05 16 39 H 0.10 2.00 4.86 -51.93 -0.25 1.74 16 40 H 0.08 1.37 8.14 -51.93 -0.42 0.95 16 41 H 0.12 1.54 8.06 -52.49 -0.42 1.11 16 42 H 0.12 1.13 8.06 -52.49 -0.42 0.70 16 43 H 0.12 1.01 8.06 -52.49 -0.42 0.59 16 44 H 0.12 1.11 8.06 -52.49 -0.42 0.68 16 45 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 46 H 0.09 1.07 6.78 -51.92 -0.35 0.72 16 LS Contribution 373.51 15.07 5.63 5.63 Total: -1.00 -30.63 373.51 -11.07 -41.70 By element: Atomic # 1 Polarization: 22.03 SS G_CDS: -5.87 Total: 16.17 kcal Atomic # 6 Polarization: -11.55 SS G_CDS: -6.21 Total: -17.76 kcal Atomic # 7 Polarization: -47.21 SS G_CDS: 0.31 Total: -46.90 kcal Atomic # 8 Polarization: -14.76 SS G_CDS: 0.08 Total: -14.68 kcal Atomic # 14 Polarization: 20.87 SS G_CDS: -5.02 Total: 15.84 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -30.63 -11.07 -41.70 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000081639764.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.819 kcal (2) G-P(sol) polarization free energy of solvation -30.626 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.193 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.074 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.701 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.118 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds