Wall clock time and date at job start Tue Mar 31 2020 05:42:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.32110 * 124.81929 * 2 1 4 4 C 1.40823 * 115.65516 * 180.02562 * 3 2 1 5 5 S 1.77447 * 138.28931 * 180.31590 * 4 3 2 6 6 C 1.75667 * 90.23159 * 179.97438 * 5 4 3 7 7 N 1.38865 * 125.08305 * 179.97438 * 6 5 4 8 8 C 1.34776 * 119.99944 * 179.71832 * 7 6 5 9 9 O 1.21581 * 120.00063 * 354.81275 * 8 7 6 10 10 N 1.34777 * 119.99885 * 174.81048 * 8 7 6 11 11 C 1.46500 * 120.00034 * 184.91095 * 10 8 7 12 12 C 1.50694 * 109.47189 * 89.99929 * 11 10 8 13 13 H 1.08004 * 120.00223 * 0.02562 * 12 11 10 14 14 C 1.37875 * 120.00186 * 180.02562 * 12 11 10 15 15 N 1.31519 * 120.00096 * 0.02562 * 14 12 11 16 16 Si 1.86804 * 120.00082 * 180.02562 * 14 12 11 17 17 H 1.48499 * 109.47261 * 60.00122 * 16 14 12 18 18 H 1.48500 * 109.46876 * 180.02562 * 16 14 12 19 19 H 1.48499 * 109.46931 * 299.99920 * 16 14 12 20 20 C 1.46494 * 120.00074 * 4.91408 * 10 8 7 21 21 C 1.52996 * 117.50013 * 193.45446 * 20 10 8 22 22 C 1.53001 * 117.50025 * 124.79227 * 20 10 8 23 23 N 1.28612 * 109.83098 * 359.71209 * 6 5 4 24 24 C 1.34658 * 118.00723 * 0.22303 * 23 6 5 25 25 S 1.75337 * 124.81652 * 180.02562 * 2 1 3 26 26 H 1.08998 * 109.47437 * 180.02562 * 1 2 3 27 27 H 1.09003 * 109.47045 * 300.00360 * 1 2 3 28 28 H 1.08997 * 109.46861 * 59.99835 * 1 2 3 29 29 H 1.07996 * 122.17404 * 359.97438 * 3 2 1 30 30 H 0.97000 * 120.00276 * 359.72338 * 7 6 5 31 31 H 1.08996 * 109.47148 * 210.00580 * 11 10 8 32 32 H 1.09007 * 109.46800 * 330.00402 * 11 10 8 33 33 H 0.96999 * 119.99963 * 179.97438 * 15 14 12 34 34 H 1.08998 * 115.55220 * 339.12434 * 20 10 8 35 35 H 1.09003 * 117.49928 * 359.97438 * 21 20 10 36 36 H 1.09001 * 117.50177 * 145.02135 * 21 20 10 37 37 H 1.08997 * 117.50248 * 214.98025 * 22 20 10 38 38 H 1.09003 * 117.49916 * 359.97438 * 22 20 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2614 1.0846 0.0000 4 6 3.6516 0.8603 -0.0006 5 16 5.1474 1.8149 0.0056 6 6 6.0985 0.3380 -0.0015 7 7 7.4860 0.2821 -0.0013 8 6 8.1124 -0.9112 -0.0014 9 8 7.4664 -1.9369 0.0935 10 7 9.4548 -0.9676 -0.1067 11 6 10.1272 -2.2647 -0.2152 12 6 10.2493 -2.6473 -1.6676 13 1 9.8649 -1.9899 -2.4334 14 6 10.8518 -3.8367 -2.0190 15 7 11.3195 -4.6375 -1.0865 16 14 11.0038 -4.3106 -3.8195 17 1 11.7973 -3.2808 -4.5371 18 1 11.6841 -5.6260 -3.9293 19 1 9.6501 -4.4020 -4.4232 20 6 10.2417 0.2680 -0.1127 21 6 11.7058 0.1712 -0.5461 22 6 11.3567 0.4006 0.9266 23 7 5.3175 -0.6839 -0.0015 24 6 3.9889 -0.4643 -0.0009 25 16 2.5081 -1.4395 -0.0006 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 1.8393 2.0786 -0.0004 30 1 8.0044 1.1019 -0.0010 31 1 11.1209 -2.1970 0.2275 32 1 9.5453 -3.0208 0.3120 33 1 11.7430 -5.4745 -1.3336 34 1 9.6956 1.1718 -0.3829 35 1 12.0837 -0.8120 -0.8264 36 1 12.1230 1.0114 -1.1011 37 1 11.5444 1.3916 1.3398 38 1 11.5046 -0.4314 1.6150 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000083581677.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:42:21 Heat of formation + Delta-G solvation = 88.342489 kcal Electronic energy + Delta-G solvation = -23620.264061 eV Core-core repulsion = 20104.169219 eV Total energy + Delta-G solvation = -3516.094842 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 337.066 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.36352 -39.26271 -37.26225 -36.20269 -34.32796 -33.23835 -32.05132 -30.77136 -27.70031 -26.04348 -24.51853 -23.36750 -22.72902 -22.00320 -21.65605 -20.14605 -19.48775 -18.10407 -17.67104 -16.49332 -16.44416 -16.32517 -15.48025 -14.95018 -14.88006 -14.48746 -14.34445 -14.14641 -13.93726 -13.87301 -13.60473 -12.89983 -12.55489 -12.44696 -12.09449 -11.69140 -11.55727 -11.42443 -11.06546 -10.92462 -10.81400 -10.73257 -10.56624 -10.33967 -10.13532 -10.00386 -9.81131 -9.72639 -9.54976 -9.02765 -8.45196 -8.02591 -7.99565 -7.57851 -6.06423 -4.11301 0.31080 0.75109 0.98622 1.54721 2.03055 2.04124 2.70879 2.88187 3.31437 3.36303 3.40090 3.69882 3.96332 4.33141 4.45528 4.50700 4.76600 4.98292 5.03326 5.09780 5.19928 5.25182 5.27279 5.35700 5.46647 5.58777 5.79489 5.87004 5.97841 6.04462 6.29917 6.36234 6.53872 6.70668 7.12930 7.38229 7.45538 7.75090 7.90771 8.18370 8.41030 8.88406 9.09969 9.53740 11.01259 Molecular weight = 337.07amu Principal moments of inertia in cm(-1) A = 0.014312 B = 0.003203 C = 0.002774 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1955.899933 B = 8739.616906 C =10092.544423 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C -0.188 4.188 3 C -0.080 4.080 4 C -0.219 4.219 5 S 0.085 5.915 6 C 0.370 3.630 7 N -0.644 5.644 8 C 0.696 3.304 9 O -0.517 6.517 10 N -0.575 5.575 11 C 0.259 3.741 12 C -0.526 4.526 13 H 0.057 0.943 14 C 0.063 3.937 15 N -0.894 5.894 16 Si 0.898 3.102 17 H -0.276 1.276 18 H -0.286 1.286 19 H -0.276 1.276 20 C 0.065 3.935 21 C -0.170 4.170 22 C -0.198 4.198 23 N -0.447 5.447 24 C 0.035 3.965 25 S 0.198 5.802 26 H 0.069 0.931 27 H 0.078 0.922 28 H 0.078 0.922 29 H 0.142 0.858 30 H 0.415 0.585 31 H 0.039 0.961 32 H 0.047 0.953 33 H 0.264 0.736 34 H 0.109 0.891 35 H 0.122 0.878 36 H 0.093 0.907 37 H 0.093 0.907 38 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.445 16.505 3.765 22.254 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.307 4.307 3 C -0.113 4.113 4 C -0.349 4.349 5 S 0.332 5.668 6 C -0.009 4.009 7 N -0.300 5.300 8 C 0.396 3.604 9 O -0.386 6.386 10 N -0.309 5.309 11 C 0.141 3.859 12 C -0.565 4.565 13 H 0.076 0.924 14 C -0.139 4.139 15 N -0.533 5.533 16 Si 0.725 3.275 17 H -0.202 1.202 18 H -0.212 1.212 19 H -0.202 1.202 20 C -0.041 4.041 21 C -0.208 4.208 22 C -0.237 4.237 23 N -0.168 5.168 24 C -0.207 4.207 25 S 0.458 5.542 26 H 0.088 0.912 27 H 0.096 0.904 28 H 0.096 0.904 29 H 0.159 0.841 30 H 0.254 0.746 31 H 0.057 0.943 32 H 0.065 0.935 33 H 0.074 0.926 34 H 0.126 0.874 35 H 0.140 0.860 36 H 0.112 0.888 37 H 0.112 0.888 38 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -14.504 14.430 3.856 20.820 hybrid contribution 0.397 1.058 -1.077 1.561 sum -14.107 15.488 2.779 21.133 Atomic orbital electron populations 1.20302 0.86983 1.03149 1.03104 1.24050 1.00285 0.96006 1.10395 1.18877 0.88545 0.99791 1.04107 1.23465 0.98195 0.95010 1.18262 1.84603 0.95822 1.08136 1.78237 1.23545 0.88994 0.89856 0.98497 1.42704 1.00794 1.10648 1.75857 1.15880 0.82631 0.82477 0.79458 1.91047 1.63552 1.31226 1.52795 1.47148 1.02290 1.08038 1.73463 1.19312 0.92236 0.76779 0.97590 1.21371 1.38335 1.04784 0.92023 0.92431 1.24906 0.95352 0.95918 0.97735 1.69918 1.39168 1.11603 1.32568 0.86565 0.78352 0.77636 0.84934 1.20206 1.21163 1.20194 1.21422 0.89083 0.88600 1.05034 1.23381 0.96207 1.04977 0.96199 1.23428 1.04130 1.02744 0.93441 1.65753 1.00093 1.29844 1.21071 1.23451 0.94829 0.94049 1.08420 1.84340 0.89832 1.04880 1.75190 0.91154 0.90380 0.90368 0.84053 0.74595 0.94312 0.93451 0.92588 0.87393 0.85955 0.88834 0.88840 0.88375 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.50 10.35 36.01 0.37 -0.13 16 2 C -0.19 -1.95 6.42 -36.23 -0.23 -2.18 16 3 C -0.08 -0.89 10.02 -40.53 -0.41 -1.30 16 4 C -0.22 -3.09 7.00 -39.16 -0.27 -3.37 16 5 S 0.09 1.08 23.44 -107.50 -2.52 -1.44 16 6 C 0.37 6.37 8.22 -88.30 -0.73 5.65 16 7 N -0.64 -10.82 5.30 -16.57 -0.09 -10.91 16 8 C 0.70 15.26 8.23 -86.92 -0.72 14.55 16 9 O -0.52 -13.88 14.56 5.29 0.08 -13.81 16 10 N -0.58 -12.14 2.80 -173.18 -0.49 -12.62 16 11 C 0.26 6.65 4.47 -5.20 -0.02 6.63 16 12 C -0.53 -14.66 8.92 -34.44 -0.31 -14.97 16 13 H 0.06 1.62 7.81 -52.48 -0.41 1.21 16 14 C 0.06 1.79 5.46 -17.82 -0.10 1.69 16 15 N -0.89 -26.24 13.29 55.43 0.74 -25.50 16 16 Si 0.90 21.87 29.54 -169.99 -5.02 16.85 16 17 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 18 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 19 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 20 C 0.06 1.02 6.17 -67.94 -0.42 0.60 16 21 C -0.17 -2.62 9.73 -26.69 -0.26 -2.88 16 22 C -0.20 -2.76 10.03 -26.69 -0.27 -3.02 16 23 N -0.45 -9.01 8.67 -11.77 -0.10 -9.11 16 24 C 0.03 0.59 8.05 -16.87 -0.14 0.45 16 25 S 0.20 2.65 23.31 -107.50 -2.51 0.14 16 26 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 27 H 0.08 0.41 8.14 -51.93 -0.42 -0.02 16 28 H 0.08 0.42 8.14 -51.93 -0.42 -0.01 16 29 H 0.14 1.18 8.06 -52.49 -0.42 0.76 16 30 H 0.41 5.16 6.49 -40.82 -0.26 4.89 16 31 H 0.04 0.99 6.25 -51.93 -0.32 0.66 16 32 H 0.05 1.40 7.36 -51.92 -0.38 1.02 16 33 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 34 H 0.11 1.30 6.30 -51.93 -0.33 0.97 16 35 H 0.12 2.35 6.29 -51.93 -0.33 2.02 16 36 H 0.09 1.18 8.14 -51.93 -0.42 0.76 16 37 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 38 H 0.10 1.53 7.84 -51.93 -0.41 1.12 16 LS Contribution 350.71 15.07 5.29 5.29 Total: -1.00 -35.19 350.71 -12.23 -47.42 By element: Atomic # 1 Polarization: 6.09 SS G_CDS: -4.11 Total: 1.98 kcal Atomic # 6 Polarization: 5.21 SS G_CDS: -3.49 Total: 1.71 kcal Atomic # 7 Polarization: -58.21 SS G_CDS: 0.06 Total: -58.14 kcal Atomic # 8 Polarization: -13.88 SS G_CDS: 0.08 Total: -13.81 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -5.02 Total: 16.85 kcal Atomic # 16 Polarization: 3.73 SS G_CDS: -5.03 Total: -1.30 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -35.19 -12.23 -47.42 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083581677.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 135.762 kcal (2) G-P(sol) polarization free energy of solvation -35.191 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 100.572 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.229 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.420 kcal (6) G-S(sol) free energy of system = (1) + (5) 88.342 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds