Wall clock time and date at job start Tue Mar 31 2020 06:08:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30884 * 1 3 3 Si 1.86796 * 120.00178 * 2 1 4 4 H 1.48507 * 109.46850 * 274.65005 * 3 2 1 5 5 H 1.48501 * 109.47113 * 34.64859 * 3 2 1 6 6 H 1.48494 * 109.47287 * 154.65203 * 3 2 1 7 7 C 1.39889 * 119.99668 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99782 * 162.16306 * 7 2 1 9 9 C 1.41215 * 120.00358 * 342.16292 * 7 2 1 10 10 C 1.40836 * 120.17857 * 155.14407 * 9 7 2 11 11 C 1.36440 * 119.80851 * 180.02562 * 10 9 7 12 12 C 1.39306 * 120.18685 * 359.97438 * 11 10 9 13 13 O 1.35677 * 119.81810 * 179.97438 * 12 11 10 14 14 C 1.42893 * 117.00101 * 180.02562 * 13 12 11 15 15 C 1.53005 * 109.47361 * 179.97438 * 14 13 12 16 16 N 1.46896 * 109.46813 * 65.00022 * 15 14 13 17 17 C 1.46899 * 110.99855 * 180.02562 * 16 15 14 18 18 C 1.50705 * 109.47046 * 179.97438 * 17 16 15 19 19 C 1.36625 * 120.07339 * 259.97144 * 18 17 16 20 20 C 1.38924 * 120.81245 * 180.02562 * 19 18 17 21 21 C 1.36498 * 120.62809 * 359.78267 * 20 19 18 22 22 C 1.39903 * 119.63663 * 0.43931 * 21 20 19 23 23 C 1.45938 * 134.03150 * 179.87812 * 22 21 20 24 24 N 1.30238 * 107.78465 * 179.71407 * 23 22 21 25 25 N 1.39873 * 110.09261 * 359.97438 * 24 23 22 26 26 H 0.97001 * 125.46044 * 180.02562 * 25 24 23 27 27 C 1.37041 * 109.08482 * 0.02562 * 25 24 23 28 28 C 1.39313 * 120.36609 * 0.25862 * 12 11 10 29 29 C 1.36438 * 120.18360 * 359.48707 * 28 12 11 30 30 H 0.97003 * 119.99978 * 0.02562 * 1 2 3 31 31 H 1.07996 * 120.09431 * 359.97438 * 10 9 7 32 32 H 1.08005 * 119.89926 * 179.97438 * 11 10 9 33 33 H 1.09003 * 109.47505 * 59.99737 * 14 13 12 34 34 H 1.09000 * 109.47461 * 299.99835 * 14 13 12 35 35 H 1.08997 * 109.46787 * 305.00350 * 15 14 13 36 36 H 1.08997 * 109.47134 * 185.00062 * 15 14 13 37 37 H 1.00901 * 111.00295 * 303.95451 * 16 15 14 38 38 H 1.08997 * 109.47448 * 60.00104 * 17 16 15 39 39 H 1.09000 * 109.47103 * 299.99757 * 17 16 15 40 40 H 1.07999 * 119.59503 * 0.02562 * 19 18 17 41 41 H 1.08001 * 119.68464 * 180.02562 * 20 19 18 42 42 H 1.08001 * 120.18070 * 180.02562 * 21 20 19 43 43 H 1.08001 * 126.10420 * 359.71647 * 23 22 21 44 44 H 1.08001 * 119.91046 * 179.71696 * 28 12 11 45 45 H 1.07997 * 120.09396 * 180.25786 * 29 28 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3088 0.0000 0.0000 3 14 2.2429 1.6177 0.0000 4 1 2.3921 2.1031 -1.3956 5 1 1.4929 2.6223 0.7960 6 1 3.5861 1.4137 0.5994 7 6 2.0082 -1.2115 0.0005 8 1 3.0494 -1.2341 -0.2860 9 6 1.3531 -2.4049 0.3757 10 6 1.8225 -3.6475 -0.0923 11 6 1.1835 -4.7958 0.2744 12 6 0.0699 -4.7416 1.1097 13 8 -0.5602 -5.8881 1.4693 14 6 -1.6959 -5.7625 2.3273 15 6 -2.2694 -7.1503 2.6208 16 7 -1.2895 -7.9334 3.3853 17 6 -1.8067 -9.2751 3.6855 18 6 -0.7760 -10.0473 4.4682 19 6 0.0221 -10.9586 3.8365 20 6 0.9768 -11.6792 4.5431 21 6 1.1402 -11.4879 5.8847 22 6 0.3318 -10.5637 6.5552 23 6 0.2335 -10.1203 7.9421 24 7 -0.7051 -9.2197 8.0064 25 7 -1.2618 -9.0148 6.7397 26 1 -1.9769 -8.3927 6.5332 27 6 -0.6353 -9.8337 5.8370 28 6 -0.4038 -3.5162 1.5732 29 6 0.2269 -2.3590 1.2200 30 1 -0.4850 0.8401 -0.0004 31 1 2.6854 -3.6912 -0.7403 32 1 1.5420 -5.7495 -0.0840 33 1 -2.4551 -5.1521 1.8383 34 1 -1.3949 -5.2884 3.2616 35 1 -2.4880 -7.6590 1.6820 36 1 -3.1863 -7.0492 3.2015 37 1 -0.4085 -7.9868 2.8963 38 1 -2.0218 -9.7984 2.7539 39 1 -2.7205 -9.1891 4.2734 40 1 -0.0905 -11.1208 2.7747 41 1 1.5983 -12.3948 4.0253 42 1 1.8849 -12.0517 6.4268 43 1 0.8324 -10.4756 8.7677 44 1 -1.2704 -3.4824 2.2167 45 1 -0.1391 -1.4102 1.5835 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000084025408.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:08:20 Heat of formation + Delta-G solvation = 64.095739 kcal Electronic energy + Delta-G solvation = -26902.583315 eV Core-core repulsion = 23078.906422 eV Total energy + Delta-G solvation = -3823.676893 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 337.153 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.47173 -38.88961 -37.83335 -36.73996 -35.70776 -33.41095 -32.77212 -30.72194 -29.90662 -29.64950 -29.27092 -28.28256 -25.19373 -24.67287 -22.78685 -22.41001 -22.23856 -21.17711 -20.97455 -20.12473 -18.00814 -17.36768 -17.06431 -16.79862 -15.91375 -15.62392 -15.51193 -15.30003 -14.96424 -14.68814 -14.56535 -14.10055 -14.00159 -13.93738 -13.50026 -12.98406 -12.82113 -12.59785 -12.27581 -12.12093 -11.95332 -11.88799 -11.77935 -11.48488 -11.26103 -11.12894 -11.09050 -10.95967 -10.86865 -10.56493 -10.42509 -9.89694 -9.79400 -9.37009 -9.00621 -8.90053 -8.57690 -8.14485 -7.64811 -7.00571 -6.72692 -4.24733 0.69417 1.33044 2.27832 2.55878 2.77404 2.96906 3.08222 3.12569 3.21961 3.50551 3.95330 4.09802 4.15289 4.36421 4.37471 4.56427 4.62286 4.69856 4.96001 4.96641 5.10882 5.20275 5.25207 5.36522 5.49876 5.62011 5.64285 5.67256 5.71055 5.77964 5.95544 6.13027 6.15414 6.21721 6.27645 6.28859 6.62004 6.72053 6.83284 6.89588 7.07160 7.11433 7.26784 7.29722 7.39821 7.41423 7.56245 7.91684 8.00651 8.15563 8.44625 8.65525 8.90634 8.99709 10.22219 Molecular weight = 337.15amu Principal moments of inertia in cm(-1) A = 0.017445 B = 0.001958 C = 0.001933 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1604.670701 B =14295.520878 C =14481.350500 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.801 5.801 2 C 0.075 3.925 3 Si 0.906 3.094 4 H -0.271 1.271 5 H -0.276 1.276 6 H -0.261 1.261 7 C -0.463 4.463 8 H 0.077 0.923 9 C 0.087 3.913 10 C -0.197 4.197 11 C -0.114 4.114 12 C -0.006 4.006 13 O -0.332 6.332 14 C 0.068 3.932 15 C 0.064 3.936 16 N -0.685 5.685 17 C 0.099 3.901 18 C -0.104 4.104 19 C -0.064 4.064 20 C -0.160 4.160 21 C -0.040 4.040 22 C -0.188 4.188 23 C 0.072 3.928 24 N -0.251 5.251 25 N -0.499 5.499 26 H 0.442 0.558 27 C 0.155 3.845 28 C -0.173 4.173 29 C -0.134 4.134 30 H 0.279 0.721 31 H 0.099 0.901 32 H 0.095 0.905 33 H 0.056 0.944 34 H 0.059 0.941 35 H 0.039 0.961 36 H 0.083 0.917 37 H 0.357 0.643 38 H 0.044 0.956 39 H 0.072 0.928 40 H 0.127 0.873 41 H 0.126 0.874 42 H 0.127 0.873 43 H 0.195 0.805 44 H 0.094 0.906 45 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.570 -20.139 10.349 22.922 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.427 5.427 2 C -0.142 4.142 3 Si 0.731 3.269 4 H -0.197 1.197 5 H -0.201 1.201 6 H -0.185 1.185 7 C -0.493 4.493 8 H 0.095 0.905 9 C 0.085 3.915 10 C -0.216 4.216 11 C -0.133 4.133 12 C -0.049 4.049 13 O -0.248 6.248 14 C -0.008 4.008 15 C -0.065 4.065 16 N -0.318 5.318 17 C -0.030 4.030 18 C -0.108 4.108 19 C -0.085 4.085 20 C -0.179 4.179 21 C -0.060 4.060 22 C -0.196 4.196 23 C -0.126 4.126 24 N -0.065 5.065 25 N -0.214 5.214 26 H 0.286 0.714 27 C 0.037 3.963 28 C -0.192 4.192 29 C -0.154 4.154 30 H 0.090 0.910 31 H 0.117 0.883 32 H 0.113 0.887 33 H 0.074 0.926 34 H 0.077 0.923 35 H 0.058 0.942 36 H 0.101 0.899 37 H 0.177 0.823 38 H 0.062 0.938 39 H 0.091 0.909 40 H 0.145 0.855 41 H 0.144 0.856 42 H 0.145 0.855 43 H 0.212 0.788 44 H 0.112 0.888 45 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -4.590 -19.056 11.668 22.811 hybrid contribution 0.259 0.480 -1.467 1.565 sum -4.331 -18.577 10.201 21.631 Atomic orbital electron populations 1.69844 1.07530 1.29014 1.36314 1.25876 0.94710 1.01228 0.92380 0.86339 0.80769 0.80858 0.78978 1.19652 1.20132 1.18476 1.19462 0.98067 0.91234 1.40563 0.90516 1.17594 0.91854 0.92179 0.89868 1.20593 1.03221 0.92289 1.05537 1.19592 0.95717 0.97580 1.00360 1.18511 0.97568 0.83768 1.05024 1.85723 1.42742 1.31167 1.65170 1.22482 0.88352 0.95967 0.94043 1.22005 0.95054 0.93313 0.96115 1.60573 1.07117 1.13205 1.50909 1.20794 0.95477 0.88863 0.97893 1.18541 1.01568 1.00737 0.89981 1.20695 0.93832 0.94241 0.99753 1.20630 1.00613 1.02456 0.94229 1.20337 0.96582 0.95014 0.94099 1.19941 1.02225 1.03951 0.93459 1.25065 0.96742 0.95022 0.95779 1.76566 1.11027 1.17251 1.01645 1.45965 1.34850 1.37240 1.03296 0.71353 1.18520 0.94001 0.92356 0.91384 1.20607 1.01366 0.92934 1.04247 1.20938 0.98502 0.96493 0.99425 0.91037 0.88266 0.88659 0.92620 0.92251 0.94248 0.89896 0.82346 0.93782 0.90930 0.85462 0.85572 0.85513 0.78786 0.88813 0.86204 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -20.87 10.98 55.54 0.61 -20.26 16 2 C 0.07 1.89 5.13 -17.34 -0.09 1.80 16 3 Si 0.91 18.83 29.60 -169.99 -5.03 13.79 16 4 H -0.27 -5.55 7.11 56.52 0.40 -5.15 16 5 H -0.28 -5.62 7.11 56.52 0.40 -5.21 16 6 H -0.26 -5.39 7.11 56.52 0.40 -4.98 16 7 C -0.46 -12.39 9.04 -37.83 -0.34 -12.73 16 8 H 0.08 1.97 7.91 -52.48 -0.41 1.55 16 9 C 0.09 2.35 5.57 -106.80 -0.59 1.76 16 10 C -0.20 -4.88 9.74 -39.25 -0.38 -5.26 16 11 C -0.11 -2.64 9.92 -39.83 -0.40 -3.04 16 12 C -0.01 -0.13 6.71 -38.78 -0.26 -0.39 16 13 O -0.33 -6.51 9.64 -18.73 -0.18 -6.69 16 14 C 0.07 1.06 5.07 37.16 0.19 1.25 16 15 C 0.06 0.76 6.11 -3.82 -0.02 0.74 16 16 N -0.68 -8.10 6.49 -115.06 -0.75 -8.85 16 17 C 0.10 0.94 5.82 -4.97 -0.03 0.91 16 18 C -0.10 -1.06 5.37 -104.83 -0.56 -1.63 16 19 C -0.06 -0.58 9.58 -39.91 -0.38 -0.96 16 20 C -0.16 -1.32 9.97 -39.96 -0.40 -1.72 16 21 C -0.04 -0.34 10.07 -39.59 -0.40 -0.74 16 22 C -0.19 -1.95 6.37 -105.20 -0.67 -2.62 16 23 C 0.07 0.68 12.28 -15.15 -0.19 0.50 16 24 N -0.25 -2.91 12.55 31.87 0.40 -2.51 16 25 N -0.50 -5.57 7.37 32.36 0.24 -5.33 16 26 H 0.44 4.27 8.96 -182.77 -1.64 2.63 16 27 C 0.15 1.74 7.04 -84.18 -0.59 1.15 16 28 C -0.17 -4.08 8.96 -39.83 -0.36 -4.44 16 29 C -0.13 -3.52 8.64 -39.25 -0.34 -3.86 16 30 H 0.28 6.61 8.30 -40.82 -0.34 6.27 16 31 H 0.10 2.28 8.06 -52.49 -0.42 1.86 16 32 H 0.10 1.99 8.06 -52.48 -0.42 1.56 16 33 H 0.06 0.86 7.64 -51.93 -0.40 0.47 16 34 H 0.06 0.97 7.66 -51.93 -0.40 0.57 16 35 H 0.04 0.46 8.14 -51.93 -0.42 0.04 16 36 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 37 H 0.36 4.80 8.28 -39.29 -0.33 4.48 16 38 H 0.04 0.38 7.98 -51.93 -0.41 -0.03 16 39 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 40 H 0.13 0.93 8.01 -52.49 -0.42 0.51 16 41 H 0.13 0.76 8.06 -52.49 -0.42 0.34 16 42 H 0.13 0.73 8.06 -52.49 -0.42 0.31 16 43 H 0.20 1.07 8.06 -52.49 -0.42 0.64 16 44 H 0.09 1.98 6.27 -52.49 -0.33 1.65 16 45 H 0.12 3.23 6.18 -52.49 -0.32 2.91 16 LS Contribution 381.23 15.07 5.74 5.74 Total: -1.00 -30.40 381.23 -11.96 -42.36 By element: Atomic # 1 Polarization: 18.19 SS G_CDS: -7.18 Total: 11.02 kcal Atomic # 6 Polarization: -23.46 SS G_CDS: -5.81 Total: -29.28 kcal Atomic # 7 Polarization: -37.45 SS G_CDS: 0.50 Total: -36.95 kcal Atomic # 8 Polarization: -6.51 SS G_CDS: -0.18 Total: -6.69 kcal Atomic # 14 Polarization: 18.83 SS G_CDS: -5.03 Total: 13.79 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -30.40 -11.96 -42.36 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084025408.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.458 kcal (2) G-P(sol) polarization free energy of solvation -30.404 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.053 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.958 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.362 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.096 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds