Wall clock time and date at job start Tue Mar 31 2020 05:08:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30881 * 1 3 3 Si 1.86797 * 119.99814 * 2 1 4 4 H 1.48509 * 109.46793 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47122 * 299.99484 * 3 2 1 6 6 H 1.48496 * 109.47520 * 59.99786 * 3 2 1 7 7 C 1.39897 * 119.99763 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99529 * 197.93514 * 7 2 1 9 9 C 1.41214 * 120.00048 * 17.93764 * 7 2 1 10 10 C 1.40829 * 120.17782 * 204.53667 * 9 7 2 11 11 C 1.36441 * 119.81219 * 180.02562 * 10 9 7 12 12 C 1.39310 * 120.18296 * 0.02562 * 11 10 9 13 13 O 1.35674 * 119.81568 * 179.97438 * 12 11 10 14 14 C 1.42908 * 116.99919 * 179.97438 * 13 12 11 15 15 C 1.53000 * 109.47025 * 179.97438 * 14 13 12 16 16 N 1.46501 * 109.46770 * 65.00079 * 15 14 13 17 17 C 1.36949 * 119.69097 * 90.00235 * 16 15 14 18 18 C 1.35056 * 119.66525 * 179.97438 * 17 16 15 19 19 Cl 1.73603 * 120.44677 * 180.02562 * 18 17 16 20 20 C 1.41661 * 119.10118 * 359.97438 * 18 17 16 21 21 O 1.21776 * 120.30793 * 179.97438 * 20 18 17 22 22 N 1.34836 * 119.38467 * 0.02562 * 20 18 17 23 23 H 0.97000 * 119.85620 * 180.02562 * 22 20 18 24 24 C 1.34541 * 119.69112 * 270.26775 * 16 15 14 25 25 O 1.21592 * 119.52753 * 0.02562 * 24 16 15 26 26 C 1.39315 * 120.36550 * 0.24446 * 12 11 10 27 27 C 1.36436 * 120.18580 * 359.49024 * 26 12 11 28 28 H 0.96999 * 119.99840 * 0.02562 * 1 2 3 29 29 H 1.07997 * 120.09597 * 0.02562 * 10 9 7 30 30 H 1.07996 * 119.91041 * 179.97438 * 11 10 9 31 31 H 1.09002 * 109.46828 * 59.99638 * 14 13 12 32 32 H 1.08993 * 109.46828 * 299.99843 * 14 13 12 33 33 H 1.09000 * 109.46934 * 305.00368 * 15 14 13 34 34 H 1.08994 * 109.46861 * 185.00131 * 15 14 13 35 35 H 1.08000 * 120.16436 * 0.02562 * 17 16 15 36 36 H 1.08004 * 119.90573 * 179.72357 * 26 12 11 37 37 H 1.07995 * 120.09999 * 180.25332 * 27 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3088 0.0000 0.0000 3 14 2.2427 1.6177 0.0000 4 1 3.7028 1.3463 0.0006 5 1 1.8841 2.3964 -1.2126 6 1 1.8840 2.3965 1.2124 7 6 2.0082 -1.2116 0.0005 8 1 3.0489 -1.2341 0.2886 9 6 1.3536 -2.4049 -0.3756 10 6 1.8264 -3.6480 0.0877 11 6 1.1885 -4.7964 -0.2808 12 6 0.0728 -4.7417 -1.1133 13 8 -0.5555 -5.8884 -1.4754 14 6 -1.6937 -5.7623 -2.3304 15 6 -2.2638 -7.1505 -2.6285 16 7 -2.7731 -7.7453 -1.3903 17 6 -4.0763 -7.5379 -1.0241 18 6 -4.5454 -8.0870 0.1172 19 17 -6.1941 -7.8378 0.6005 20 6 -3.6742 -8.8699 0.9140 21 8 -4.0739 -9.3749 1.9475 22 7 -2.3979 -9.0499 0.5179 23 1 -1.7956 -9.5850 1.0580 24 6 -1.9547 -8.4858 -0.6209 25 8 -0.7996 -8.6528 -0.9623 26 6 -0.3979 -3.5166 -1.5805 27 6 0.2252 -2.3585 -1.2171 28 1 -0.4850 0.8400 -0.0004 29 1 2.6914 -3.6921 0.7328 30 1 1.5499 -5.7506 0.0732 31 1 -1.3959 -5.2841 -3.2636 32 1 -2.4530 -5.1555 -1.8373 33 1 -1.4789 -7.7849 -3.0403 34 1 -3.0759 -7.0624 -3.3501 35 1 -4.7258 -6.9390 -1.6452 36 1 -1.2608 -3.4832 -2.2292 37 1 -0.1433 -1.4093 -1.5768 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000084397748.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:08:35 Heat of formation + Delta-G solvation = -55.150924 kcal Electronic energy + Delta-G solvation = -25766.315161 eV Core-core repulsion = 21728.794217 eV Total energy + Delta-G solvation = -4037.520944 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 336.071 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -42.45939 -39.41301 -38.76038 -37.52567 -36.75335 -36.40231 -35.06553 -33.42268 -32.00839 -29.91785 -29.63250 -28.74525 -25.41879 -25.02275 -24.28118 -22.86039 -21.09544 -20.49161 -19.65371 -19.05073 -17.43501 -17.37910 -17.20399 -16.98384 -16.57930 -15.62255 -15.46178 -15.02336 -14.70435 -14.50615 -14.30985 -14.08363 -13.98622 -13.49449 -13.05847 -12.78269 -12.50545 -12.36771 -11.97441 -11.70164 -11.52161 -11.47758 -11.21210 -11.10339 -11.03283 -10.99609 -10.64123 -10.51969 -10.47079 -10.01337 -9.82788 -9.43474 -9.06775 -8.69949 -7.71006 -7.07195 -6.77958 -4.29988 0.50598 1.30706 1.74602 2.22094 2.71121 2.78679 2.91753 3.05748 3.10957 3.14571 3.16564 3.79487 3.89712 3.91821 4.33504 4.56323 4.60548 4.81024 4.88940 5.01884 5.34433 5.49217 5.59034 5.62186 5.77027 5.95223 6.02089 6.23706 6.64433 6.82854 6.84158 7.02100 7.21657 7.23065 7.35308 7.50863 7.71301 7.84068 7.95592 8.10166 8.37720 8.59418 8.85645 8.93799 10.16892 Molecular weight = 336.07amu Principal moments of inertia in cm(-1) A = 0.016862 B = 0.002667 C = 0.002533 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1660.138688 B =10496.633461 C =11049.839309 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.799 5.799 2 C 0.075 3.925 3 Si 0.907 3.093 4 H -0.261 1.261 5 H -0.273 1.273 6 H -0.275 1.275 7 C -0.462 4.462 8 H 0.078 0.922 9 C 0.088 3.912 10 C -0.196 4.196 11 C -0.108 4.108 12 C -0.013 4.013 13 O -0.314 6.314 14 C 0.044 3.956 15 C 0.113 3.887 16 N -0.521 5.521 17 C 0.199 3.801 18 C -0.231 4.231 19 Cl -0.012 7.012 20 C 0.561 3.439 21 O -0.502 6.502 22 N -0.654 5.654 23 H 0.435 0.565 24 C 0.695 3.305 25 O -0.503 6.503 26 C -0.174 4.174 27 C -0.135 4.135 28 H 0.279 0.721 29 H 0.099 0.901 30 H 0.096 0.904 31 H 0.075 0.925 32 H 0.058 0.942 33 H 0.116 0.884 34 H 0.116 0.884 35 H 0.186 0.814 36 H 0.093 0.907 37 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.019 -12.011 -6.725 17.632 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.426 5.426 2 C -0.142 4.142 3 Si 0.731 3.269 4 H -0.184 1.184 5 H -0.198 1.198 6 H -0.200 1.200 7 C -0.492 4.492 8 H 0.096 0.904 9 C 0.086 3.914 10 C -0.216 4.216 11 C -0.127 4.127 12 C -0.056 4.056 13 O -0.230 6.230 14 C -0.033 4.033 15 C -0.008 4.008 16 N -0.241 5.241 17 C 0.072 3.928 18 C -0.268 4.268 19 Cl 0.017 6.983 20 C 0.353 3.647 21 O -0.376 6.376 22 N -0.324 5.324 23 H 0.278 0.722 24 C 0.397 3.603 25 O -0.372 6.372 26 C -0.193 4.193 27 C -0.155 4.155 28 H 0.090 0.910 29 H 0.118 0.882 30 H 0.114 0.886 31 H 0.093 0.907 32 H 0.076 0.924 33 H 0.134 0.866 34 H 0.134 0.866 35 H 0.203 0.797 36 H 0.111 0.889 37 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -10.821 -12.308 -6.397 17.592 hybrid contribution 0.152 1.008 0.258 1.051 sum -10.669 -11.300 -6.139 16.710 Atomic orbital electron populations 1.69844 1.07543 1.28998 1.36167 1.25881 0.94714 1.01267 0.92321 0.86287 0.81037 0.81041 0.78511 1.18418 1.19769 1.20042 1.19518 0.98172 0.91212 1.40299 0.90429 1.17605 0.91783 0.92163 0.89833 1.20610 1.03219 0.92229 1.05539 1.19617 0.95435 0.97642 1.00018 1.18537 0.97902 0.83666 1.05491 1.85958 1.41565 1.30596 1.64893 1.22882 0.89651 0.94948 0.95865 1.22225 1.01111 0.95107 0.82342 1.44844 1.08737 1.46580 1.23967 1.22226 0.84959 0.91715 0.93857 1.20797 0.91597 1.14099 1.00302 1.98376 1.12674 1.95723 1.91559 1.16706 0.81161 0.80894 0.85924 1.90955 1.74803 1.48334 1.23462 1.44455 1.14091 1.50143 1.23709 0.72187 1.15823 0.84988 0.79150 0.80373 1.91134 1.14423 1.61164 1.70512 1.20572 1.01474 0.92907 1.04302 1.20928 0.98583 0.96463 0.99493 0.91031 0.88237 0.88578 0.90735 0.92425 0.86625 0.86597 0.79715 0.88902 0.86127 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -20.30 10.96 55.55 0.61 -19.69 16 2 C 0.07 1.85 5.13 -17.34 -0.09 1.76 16 3 Si 0.91 18.42 29.60 -169.99 -5.03 13.39 16 4 H -0.26 -5.26 7.11 56.52 0.40 -4.86 16 5 H -0.27 -5.42 7.11 56.52 0.40 -5.02 16 6 H -0.27 -5.52 7.11 56.52 0.40 -5.12 16 7 C -0.46 -12.12 9.04 -37.83 -0.34 -12.46 16 8 H 0.08 1.97 7.91 -52.49 -0.41 1.55 16 9 C 0.09 2.33 5.57 -106.80 -0.60 1.73 16 10 C -0.20 -4.82 9.74 -39.25 -0.38 -5.20 16 11 C -0.11 -2.52 9.92 -39.83 -0.40 -2.91 16 12 C -0.01 -0.29 6.71 -38.78 -0.26 -0.55 16 13 O -0.31 -5.85 8.82 -28.56 -0.25 -6.11 16 14 C 0.04 0.55 5.07 37.16 0.19 0.74 16 15 C 0.11 0.94 5.80 -4.04 -0.02 0.91 16 16 N -0.52 -5.15 2.60 -121.49 -0.32 -5.47 16 17 C 0.20 1.57 10.16 -16.40 -0.17 1.40 16 18 C -0.23 -2.42 6.33 -39.41 -0.25 -2.67 16 19 Cl -0.01 -0.12 28.60 -51.86 -1.48 -1.60 16 20 C 0.56 7.13 7.73 -14.93 -0.12 7.02 16 21 O -0.50 -7.76 17.47 5.12 0.09 -7.67 16 22 N -0.65 -7.74 5.23 -18.47 -0.10 -7.84 16 23 H 0.44 4.53 8.88 -40.82 -0.36 4.17 16 24 C 0.70 8.92 8.00 -87.29 -0.70 8.22 16 25 O -0.50 -8.04 15.80 -4.55 -0.07 -8.12 16 26 C -0.17 -3.85 8.96 -39.83 -0.36 -4.21 16 27 C -0.14 -3.40 8.64 -39.25 -0.34 -3.74 16 28 H 0.28 6.42 8.30 -40.82 -0.34 6.08 16 29 H 0.10 2.29 8.06 -52.49 -0.42 1.87 16 30 H 0.10 2.09 8.06 -52.49 -0.42 1.67 16 31 H 0.07 0.85 7.63 -51.93 -0.40 0.46 16 32 H 0.06 0.71 7.66 -51.93 -0.40 0.31 16 33 H 0.12 1.06 7.38 -51.93 -0.38 0.68 16 34 H 0.12 0.38 8.03 -51.93 -0.42 -0.04 16 35 H 0.19 0.67 8.06 -52.49 -0.42 0.25 16 36 H 0.09 1.75 6.27 -52.48 -0.33 1.42 16 37 H 0.12 3.12 6.16 -52.49 -0.32 2.79 16 LS Contribution 339.62 15.07 5.12 5.12 Total: -1.00 -33.03 339.62 -8.69 -41.72 By element: Atomic # 1 Polarization: 9.65 SS G_CDS: -3.43 Total: 6.22 kcal Atomic # 6 Polarization: -6.12 SS G_CDS: -3.83 Total: -9.95 kcal Atomic # 7 Polarization: -33.20 SS G_CDS: 0.20 Total: -33.00 kcal Atomic # 8 Polarization: -21.66 SS G_CDS: -0.23 Total: -21.89 kcal Atomic # 14 Polarization: 18.42 SS G_CDS: -5.03 Total: 13.39 kcal Atomic # 17 Polarization: -0.12 SS G_CDS: -1.48 Total: -1.60 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -33.03 -8.69 -41.72 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084397748.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.435 kcal (2) G-P(sol) polarization free energy of solvation -33.030 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.465 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.686 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.716 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.151 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds