Wall clock time and date at job start Tue Mar 31 2020 05:02:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 O 1.21274 * 119.99819 * 2 1 4 4 N 1.34779 * 120.00147 * 180.02562 * 2 1 3 5 5 C 1.46498 * 119.99974 * 5.47412 * 4 2 1 6 6 C 1.50692 * 109.47548 * 265.44397 * 5 4 2 7 7 N 1.30253 * 125.62528 * 89.96898 * 6 5 4 8 8 C 1.34474 * 108.70365 * 180.02562 * 7 6 5 9 9 C 1.34324 * 107.66887 * 0.02562 * 8 7 6 10 10 C 1.50702 * 126.44377 * 180.02562 * 9 8 7 11 11 C 1.52994 * 109.47506 * 119.99474 * 10 9 8 12 12 C 1.53005 * 109.47012 * 239.99497 * 10 9 8 13 13 O 1.33973 * 125.61877 * 270.31399 * 6 5 4 14 14 C 1.46496 * 120.00076 * 185.47655 * 4 2 1 15 15 H 1.08998 * 110.28696 * 180.67352 * 14 4 2 16 16 C 1.54267 * 110.32318 * 58.54272 * 14 4 2 17 17 C 1.54377 * 105.06323 * 241.10471 * 16 14 4 18 18 N 1.48563 * 104.59422 * 23.85322 * 17 16 14 19 19 C 1.46898 * 111.00044 * 200.96023 * 18 17 16 20 20 C 1.50689 * 109.47217 * 175.25816 * 19 18 17 21 21 H 1.08005 * 120.00162 * 355.07038 * 20 19 18 22 22 C 1.37874 * 120.00266 * 175.06348 * 20 19 18 23 23 N 1.31517 * 120.00334 * 180.02562 * 22 20 19 24 24 Si 1.86803 * 119.99862 * 0.02562 * 22 20 19 25 25 H 1.48506 * 109.47108 * 89.99931 * 24 22 20 26 26 H 1.48498 * 109.47216 * 209.99821 * 24 22 20 27 27 H 1.48503 * 109.46833 * 329.99931 * 24 22 20 28 28 C 1.48561 * 104.22009 * 320.51575 * 18 17 16 29 29 H 1.09004 * 109.47204 * 185.32450 * 1 2 3 30 30 H 1.09001 * 109.47334 * 305.32771 * 1 2 3 31 31 H 1.09002 * 109.47742 * 65.33044 * 1 2 3 32 32 H 1.09002 * 109.47379 * 145.43541 * 5 4 2 33 33 H 1.09007 * 109.46731 * 25.44394 * 5 4 2 34 34 H 1.08009 * 126.16504 * 180.02562 * 8 7 6 35 35 H 1.09000 * 109.47135 * 359.97438 * 10 9 8 36 36 H 1.09004 * 109.47406 * 179.97438 * 11 10 9 37 37 H 1.08998 * 109.47478 * 300.00024 * 11 10 9 38 38 H 1.09005 * 109.46922 * 60.00300 * 11 10 9 39 39 H 1.08992 * 109.47194 * 299.99605 * 12 10 9 40 40 H 1.09000 * 109.46841 * 60.00254 * 12 10 9 41 41 H 1.09001 * 109.47309 * 179.97438 * 12 10 9 42 42 H 1.09004 * 110.32307 * 0.02562 * 16 14 4 43 43 H 1.09008 * 110.31901 * 122.20361 * 16 14 4 44 44 H 1.09001 * 110.40951 * 142.63132 * 17 16 14 45 45 H 1.09003 * 110.40811 * 264.95880 * 17 16 14 46 46 H 1.08997 * 109.47278 * 295.26275 * 19 18 17 47 47 H 1.09005 * 109.46861 * 55.26199 * 19 18 17 48 48 H 0.96999 * 120.00062 * 180.02562 * 23 22 20 49 49 H 1.09000 * 110.41591 * 280.70247 * 28 18 17 50 50 H 1.09007 * 110.41146 * 158.25981 * 28 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1133 1.0503 0.0000 4 7 2.1809 -1.1672 -0.0005 5 6 1.4534 -2.4330 -0.1221 6 6 1.1845 -2.9918 1.2513 7 7 0.1304 -2.7479 1.9766 8 6 0.2407 -3.4187 3.1368 9 6 1.4033 -4.0909 3.1102 10 6 1.9480 -4.9808 4.1977 11 6 2.1369 -6.3971 3.6509 12 6 3.2949 -4.4351 4.6764 13 8 1.9932 -3.8164 1.9302 14 6 3.6408 -1.1701 0.1206 15 1 4.0205 -2.1914 0.0906 16 6 4.0713 -0.4766 1.4296 17 6 4.9284 0.7271 0.9828 18 7 4.4760 1.0150 -0.4027 19 6 5.4922 1.7772 -1.1406 20 6 5.0506 1.9493 -2.5710 21 1 4.1491 1.4673 -2.9196 22 6 5.7972 2.7222 -3.4348 23 7 5.4115 2.8728 -4.6831 24 14 7.3567 3.5554 -2.8321 25 1 8.5141 2.6482 -3.0385 26 1 7.5716 4.8128 -3.5924 27 1 7.2240 3.8676 -1.3864 28 6 4.2742 -0.3270 -1.0070 29 1 -0.3634 -1.0233 0.0954 30 1 -0.3634 0.5942 0.8384 31 1 -0.3635 0.4289 -0.9338 32 1 2.0524 -3.1430 -0.6925 33 1 0.5076 -2.2605 -0.6359 34 1 -0.4764 -3.4173 3.9445 35 1 1.2480 -5.0038 5.0329 36 1 2.5312 -7.0407 4.4373 37 1 1.1774 -6.7860 3.3098 38 1 2.8371 -6.3738 2.8158 39 1 3.9950 -4.4118 3.8414 40 1 3.1603 -3.4260 5.0660 41 1 3.6886 -5.0784 5.4632 42 1 3.1963 -0.1344 1.9822 43 1 4.6637 -1.1570 2.0414 44 1 4.7444 1.5855 1.6289 45 1 5.9864 0.4649 0.9924 46 1 5.6183 2.7564 -0.6789 47 1 6.4397 1.2387 -1.1152 48 1 5.9369 3.4163 -5.2909 49 1 5.2295 -0.7549 -1.3108 50 1 3.5974 -0.2624 -1.8591 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000084630721.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:02:27 Heat of formation + Delta-G solvation = -8.285586 kcal Electronic energy + Delta-G solvation = -30470.418867 eV Core-core repulsion = 26499.438937 eV Total energy + Delta-G solvation = -3970.979929 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -44.30221 -41.31981 -38.84079 -36.99286 -36.28941 -35.65098 -34.94764 -32.92240 -31.00107 -30.70094 -29.07427 -28.52693 -28.07248 -27.32958 -24.25528 -23.71108 -23.16233 -22.41584 -21.76661 -21.22207 -19.80473 -18.78194 -18.26521 -17.92841 -17.43567 -17.17375 -16.61725 -16.37318 -16.23626 -15.94361 -15.80864 -15.39127 -14.76095 -14.60819 -14.54868 -14.39735 -14.23714 -14.08752 -13.89136 -13.72143 -13.47747 -13.14587 -13.08231 -12.97305 -12.80134 -12.69090 -12.58243 -12.49437 -12.36782 -12.19362 -12.15215 -11.99921 -11.95791 -11.87683 -11.71977 -11.40105 -11.33016 -10.81081 -10.44579 -9.85642 -9.61382 -8.87514 -8.29568 -6.32240 0.43004 1.29883 1.33737 1.45031 1.55659 1.67668 1.93127 2.22640 2.32982 3.02115 3.07922 3.38548 3.61421 3.65467 3.77098 3.86472 3.94733 4.02555 4.13830 4.18711 4.28310 4.31889 4.34183 4.42323 4.50888 4.59714 4.67112 4.69166 4.72528 4.75444 4.75601 4.80196 4.84267 4.86542 4.92153 4.97992 4.99865 5.07572 5.10557 5.18373 5.18918 5.31268 5.34823 5.38570 5.52422 5.64199 6.01472 6.31225 6.46307 6.67147 6.72429 6.78000 7.30940 7.46116 8.87268 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.018938 B = 0.002962 C = 0.002746 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1478.192127 B = 9450.243441 C =10193.704709 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.487 3.513 3 O -0.518 6.518 4 N -0.606 5.606 5 C 0.203 3.797 6 C 0.162 3.838 7 N -0.487 5.487 8 C -0.060 4.060 9 C -0.034 4.034 10 C -0.008 4.008 11 C -0.146 4.146 12 C -0.148 4.148 13 O -0.202 6.202 14 C 0.149 3.851 15 H 0.124 0.876 16 C -0.108 4.108 17 C 0.033 3.967 18 N -0.486 5.486 19 C 0.160 3.840 20 C -0.510 4.510 21 H 0.033 0.967 22 C 0.007 3.993 23 N -0.948 5.948 24 Si 0.949 3.051 25 H -0.262 1.262 26 H -0.279 1.279 27 H -0.256 1.256 28 C 0.051 3.949 29 H 0.102 0.898 30 H 0.088 0.912 31 H 0.094 0.906 32 H 0.132 0.868 33 H 0.144 0.856 34 H 0.201 0.799 35 H 0.124 0.876 36 H 0.084 0.916 37 H 0.059 0.941 38 H 0.048 0.952 39 H 0.048 0.952 40 H 0.051 0.949 41 H 0.086 0.914 42 H 0.054 0.946 43 H 0.092 0.908 44 H 0.060 0.940 45 H 0.040 0.960 46 H 0.018 0.982 47 H -0.014 1.014 48 H 0.267 0.733 49 H 0.038 0.962 50 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.827 -22.497 20.522 31.704 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.276 3.724 3 O -0.391 6.391 4 N -0.341 5.341 5 C 0.079 3.921 6 C -0.047 4.047 7 N -0.217 5.217 8 C -0.198 4.198 9 C -0.088 4.088 10 C -0.026 4.026 11 C -0.203 4.203 12 C -0.206 4.206 13 O -0.088 6.088 14 C 0.045 3.955 15 H 0.141 0.859 16 C -0.147 4.147 17 C -0.095 4.095 18 N -0.209 5.209 19 C 0.032 3.968 20 C -0.548 4.548 21 H 0.051 0.949 22 C -0.190 4.190 23 N -0.589 5.589 24 Si 0.773 3.227 25 H -0.187 1.187 26 H -0.205 1.205 27 H -0.180 1.180 28 C -0.078 4.078 29 H 0.121 0.879 30 H 0.107 0.893 31 H 0.112 0.888 32 H 0.150 0.850 33 H 0.161 0.839 34 H 0.218 0.782 35 H 0.142 0.858 36 H 0.103 0.897 37 H 0.078 0.922 38 H 0.068 0.932 39 H 0.067 0.933 40 H 0.071 0.929 41 H 0.105 0.895 42 H 0.073 0.927 43 H 0.111 0.889 44 H 0.079 0.921 45 H 0.058 0.942 46 H 0.036 0.964 47 H 0.003 0.997 48 H 0.076 0.924 49 H 0.056 0.944 50 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -9.389 -21.091 20.116 30.620 hybrid contribution 1.756 0.095 -0.161 1.766 sum -7.633 -20.996 19.954 29.955 Atomic orbital electron populations 1.21962 0.89801 1.05811 1.04866 1.21547 0.91640 0.83459 0.75790 1.91032 1.70440 1.31477 1.46109 1.48198 1.05992 1.05692 1.74239 1.20243 1.01466 0.85147 0.85271 1.27109 0.85946 0.93146 0.98458 1.70373 1.23937 1.22709 1.04701 1.23492 0.99165 0.99360 0.97817 1.24050 0.94632 1.02874 0.87195 1.19952 0.98719 0.92189 0.91749 1.21858 1.02260 0.94302 1.01903 1.21872 0.95416 1.01490 1.01796 1.84375 1.45809 1.52217 1.26389 1.21897 0.79822 0.99965 0.93853 0.85867 1.22470 0.99275 0.96220 0.96709 1.23037 0.96710 0.98005 0.91780 1.65436 1.40325 1.14339 1.00831 1.20126 0.89619 0.93917 0.93159 1.21198 1.09213 1.30160 0.94226 0.94899 1.25866 1.01549 0.96809 0.94797 1.70052 1.41277 1.41614 1.05997 0.85684 0.79333 0.78460 0.79254 1.18683 1.20469 1.18031 1.23060 0.98391 0.89509 0.96816 0.87940 0.89337 0.88769 0.85047 0.83890 0.78178 0.85765 0.89676 0.92181 0.93236 0.93282 0.92948 0.89547 0.92694 0.88909 0.92124 0.94157 0.96355 0.99681 0.92435 0.94411 0.93290 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.04 9.89 71.23 0.70 -3.34 16 2 C 0.49 16.18 6.80 87.66 0.60 16.77 16 3 O -0.52 -23.34 13.16 -3.01 -0.04 -23.38 16 4 N -0.61 -16.38 2.39 -797.18 -1.91 -18.29 16 5 C 0.20 3.68 5.59 85.63 0.48 4.16 16 6 C 0.16 3.28 7.87 88.34 0.70 3.98 16 7 N -0.49 -10.56 10.74 -303.83 -3.26 -13.83 16 8 C -0.06 -1.06 11.78 83.39 0.98 -0.08 16 9 C -0.03 -0.56 5.89 24.79 0.15 -0.41 16 10 C -0.01 -0.07 3.33 -11.54 -0.04 -0.11 16 11 C -0.15 -1.23 9.17 71.98 0.66 -0.57 16 12 C -0.15 -1.54 9.18 71.98 0.66 -0.88 16 13 O -0.20 -4.01 10.78 -3.71 -0.04 -4.05 16 14 C 0.15 4.37 3.58 45.89 0.16 4.54 16 15 H 0.12 2.75 7.90 -2.39 -0.02 2.73 16 16 C -0.11 -3.25 6.07 31.49 0.19 -3.06 16 17 C 0.03 1.24 6.30 86.45 0.54 1.79 16 18 N -0.49 -22.88 3.11 -886.04 -2.75 -25.63 16 19 C 0.16 8.52 3.78 85.55 0.32 8.84 16 20 C -0.51 -31.81 9.25 25.60 0.24 -31.58 16 21 H 0.03 2.29 7.05 -2.91 -0.02 2.27 16 22 C 0.01 0.41 5.47 84.65 0.46 0.88 16 23 N -0.95 -61.92 13.96 21.45 0.30 -61.62 16 24 Si 0.95 46.83 27.57 68.60 1.89 48.73 16 25 H -0.26 -12.16 7.11 99.48 0.71 -11.45 16 26 H -0.28 -13.36 7.11 99.48 0.71 -12.66 16 27 H -0.26 -12.14 6.40 99.48 0.64 -11.50 16 28 C 0.05 2.10 4.63 86.45 0.40 2.50 16 29 H 0.10 1.99 5.01 -2.39 -0.01 1.98 16 30 H 0.09 2.17 8.14 -2.39 -0.02 2.15 16 31 H 0.09 2.22 8.14 -2.39 -0.02 2.21 16 32 H 0.13 1.72 8.03 -2.39 -0.02 1.70 16 33 H 0.14 2.08 6.04 -2.38 -0.01 2.07 16 34 H 0.20 2.40 8.06 -2.91 -0.02 2.37 16 35 H 0.12 0.67 8.11 -2.39 -0.02 0.65 16 36 H 0.08 0.42 8.14 -2.38 -0.02 0.40 16 37 H 0.06 0.51 8.14 -2.39 -0.02 0.49 16 38 H 0.05 0.55 8.14 -2.38 -0.02 0.53 16 39 H 0.05 0.64 8.14 -2.39 -0.02 0.62 16 40 H 0.05 0.63 8.14 -2.39 -0.02 0.61 16 41 H 0.09 0.56 8.14 -2.39 -0.02 0.54 16 42 H 0.05 1.82 7.22 -2.39 -0.02 1.80 16 43 H 0.09 2.20 8.14 -2.38 -0.02 2.18 16 44 H 0.06 2.35 8.14 -2.39 -0.02 2.33 16 45 H 0.04 1.41 7.91 -2.39 -0.02 1.39 16 46 H 0.02 1.01 6.85 -2.39 -0.02 0.99 16 47 H -0.01 -0.73 7.65 -2.38 -0.02 -0.75 16 48 H 0.27 16.15 8.31 -92.71 -0.77 15.38 16 49 H 0.04 1.54 7.97 -2.39 -0.02 1.52 16 50 H 0.05 2.31 7.18 -2.38 -0.02 2.29 16 Total: -1.00 -84.05 395.62 2.25 -81.80 By element: Atomic # 1 Polarization: 12.00 SS G_CDS: 0.85 Total: 12.85 kcal Atomic # 6 Polarization: -3.77 SS G_CDS: 7.21 Total: 3.43 kcal Atomic # 7 Polarization: -111.75 SS G_CDS: -7.62 Total: -119.37 kcal Atomic # 8 Polarization: -27.35 SS G_CDS: -0.08 Total: -27.43 kcal Atomic # 14 Polarization: 46.83 SS G_CDS: 1.89 Total: 48.73 kcal Total: -84.05 2.25 -81.80 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084630721.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.514 kcal (2) G-P(sol) polarization free energy of solvation -84.046 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.533 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.247 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.799 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.286 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds