Wall clock time and date at job start Tue Mar 31 2020 05:01:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08995 * 109.47261 * 2 1 4 4 C 1.50706 * 109.47219 * 120.00284 * 2 1 3 5 5 H 1.07997 * 120.00257 * 119.99915 * 4 2 1 6 6 C 1.37876 * 119.99389 * 299.99709 * 4 2 1 7 7 N 1.31508 * 120.00333 * 0.02562 * 6 4 2 8 8 Si 1.86802 * 119.99750 * 179.97438 * 6 4 2 9 9 H 1.48496 * 109.47085 * 90.00135 * 8 6 4 10 10 H 1.48496 * 109.47338 * 210.00585 * 8 6 4 11 11 H 1.48504 * 109.46973 * 330.00692 * 8 6 4 12 12 N 1.46500 * 109.47180 * 240.00153 * 2 1 3 13 13 C 1.46507 * 119.99986 * 300.00032 * 12 2 1 14 14 C 1.34773 * 120.00258 * 120.00276 * 12 2 1 15 15 O 1.21586 * 119.99824 * 359.97438 * 14 12 2 16 16 N 1.34780 * 120.00394 * 180.02562 * 14 12 2 17 17 C 1.39937 * 120.00102 * 185.06533 * 16 14 12 18 18 C 1.38901 * 120.01738 * 324.53253 * 17 16 14 19 19 C 1.38374 * 120.05268 * 179.97438 * 18 17 16 20 20 F 1.35093 * 119.95517 * 180.02562 * 19 18 17 21 21 C 1.38400 * 120.09378 * 0.29273 * 19 18 17 22 22 C 1.38907 * 120.03593 * 359.45793 * 21 19 18 23 23 N 1.39665 * 120.02782 * 180.24956 * 22 21 19 24 24 C 1.48527 * 111.00016 * 117.77473 * 23 22 21 25 25 C 1.54943 * 103.22472 * 159.72285 * 24 23 22 26 26 C 1.54592 * 102.91916 * 322.58133 * 25 24 23 27 27 C 1.47897 * 110.99769 * 235.17038 * 23 22 21 28 28 C 1.38727 * 120.02002 * 144.51541 * 17 16 14 29 29 H 1.08995 * 109.46790 * 299.99985 * 1 2 3 30 30 H 1.09001 * 109.47143 * 59.99865 * 1 2 3 31 31 H 1.09004 * 109.46936 * 179.97438 * 1 2 3 32 32 H 0.97005 * 120.00012 * 180.02562 * 7 6 4 33 33 H 1.09000 * 109.46937 * 269.99779 * 13 12 2 34 34 H 1.09002 * 109.47135 * 29.99681 * 13 12 2 35 35 H 1.08998 * 109.47027 * 150.00506 * 13 12 2 36 36 H 0.96997 * 119.99968 * 5.05409 * 16 14 12 37 37 H 1.07999 * 119.97460 * 359.97438 * 18 17 16 38 38 H 1.07994 * 119.98067 * 179.72235 * 21 19 18 39 39 H 1.09010 * 110.66650 * 278.15416 * 24 23 22 40 40 H 1.08994 * 110.67443 * 41.28491 * 24 23 22 41 41 H 1.09000 * 110.71922 * 204.22492 * 25 24 23 42 42 H 1.09005 * 110.72260 * 80.94242 * 25 24 23 43 43 H 1.09000 * 110.31072 * 263.04048 * 26 25 24 44 44 H 1.09001 * 110.30643 * 140.87499 * 26 25 24 45 45 H 1.08999 * 109.91765 * 333.50689 * 27 23 22 46 46 H 1.09008 * 109.91689 * 94.80348 * 27 23 22 47 47 H 1.08004 * 120.04959 * 359.97438 * 28 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7105 1.2305 5 1 2.6533 -1.5886 1.1314 6 6 1.6993 -0.2394 2.4827 7 7 0.9428 0.8296 2.6033 8 14 2.3213 -1.1204 4.0079 9 1 3.6296 -0.5460 4.4123 10 1 1.3431 -0.9494 5.1120 11 1 2.4859 -2.5663 3.7119 12 7 2.0183 -0.6906 -1.1962 13 6 1.6644 -2.0932 -1.4281 14 6 2.7932 -0.0356 -2.0833 15 8 3.0866 1.1285 -1.8911 16 7 3.2421 -0.6708 -3.1841 17 6 4.1318 -0.0256 -4.0503 18 6 4.0180 1.3409 -4.2719 19 6 4.8977 1.9798 -5.1279 20 9 4.7855 3.3089 -5.3417 21 6 5.8889 1.2580 -5.7697 22 6 6.0094 -0.1078 -5.5469 23 7 7.0131 -0.8351 -6.1906 24 6 7.9526 -1.4315 -5.2069 25 6 8.6255 -2.5747 -6.0076 26 6 7.4655 -3.1215 -6.8708 27 6 6.4428 -1.9726 -6.9444 28 6 5.1282 -0.7502 -4.6879 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 0.7088 1.1612 3.4844 33 1 2.4157 -2.7377 -0.9718 34 1 0.6904 -2.3003 -0.9847 35 1 1.6239 -2.2852 -2.5002 36 1 2.9486 -1.5752 -3.3757 37 1 3.2422 1.9052 -3.7758 38 1 6.5717 1.7576 -6.4409 39 1 8.6928 -0.6976 -4.8881 40 1 7.4102 -1.8299 -4.3495 41 1 9.0031 -3.3456 -5.3358 42 1 9.4251 -2.1853 -6.6378 43 1 7.0195 -3.9952 -6.3955 44 1 7.8232 -3.3741 -7.8690 45 1 5.5015 -2.2837 -6.4913 46 1 6.2809 -1.6856 -7.9835 47 1 5.2184 -1.8127 -4.5160 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000086284942.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:01:16 Heat of formation + Delta-G solvation = -22.559042 kcal Electronic energy + Delta-G solvation = -29116.076633 eV Core-core repulsion = 25021.017455 eV Total energy + Delta-G solvation = -4095.059178 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.175 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -48.76996 -40.69444 -39.73731 -37.70142 -35.59852 -34.49883 -32.94671 -32.25991 -30.03095 -29.20226 -28.82447 -28.40112 -26.29930 -25.25597 -23.46283 -23.00870 -21.52700 -21.21973 -20.61549 -19.27750 -18.32141 -17.40051 -16.71780 -16.47040 -16.17220 -15.98189 -15.65139 -15.49394 -15.40678 -14.97316 -14.71756 -14.32038 -14.13140 -13.49897 -13.38610 -13.30401 -12.98975 -12.81976 -12.68029 -12.40456 -12.13937 -11.94197 -11.73392 -11.67798 -11.61295 -11.48947 -11.46642 -11.09316 -10.90958 -10.88385 -10.76162 -10.30148 -10.20997 -10.07279 -9.44527 -9.21569 -8.92191 -8.59188 -8.46956 -8.16852 -7.64734 -6.11372 -4.19511 1.10003 1.21043 2.97374 3.24631 3.31454 3.32669 3.39261 3.54677 3.81940 4.25024 4.32002 4.38728 4.47473 4.50934 4.66254 4.95806 4.98487 5.08878 5.17419 5.19260 5.19852 5.33073 5.36890 5.45971 5.49611 5.50592 5.59047 5.65806 5.71250 5.82870 5.89297 6.08375 6.17239 6.21061 6.31738 6.43549 6.56293 6.65090 6.74092 6.85039 6.94389 7.06555 7.21068 7.38289 7.63258 7.73335 7.99717 8.15082 8.52012 8.80582 9.08189 9.47364 10.94025 Molecular weight = 335.18amu Principal moments of inertia in cm(-1) A = 0.013573 B = 0.002882 C = 0.002620 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2062.435814 B = 9712.803605 C =10685.840046 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.272 3.728 3 H 0.066 0.934 4 C -0.527 4.527 5 H 0.059 0.941 6 C 0.065 3.935 7 N -0.887 5.887 8 Si 0.899 3.101 9 H -0.280 1.280 10 H -0.285 1.285 11 H -0.275 1.275 12 N -0.601 5.601 13 C 0.087 3.913 14 C 0.696 3.304 15 O -0.575 6.575 16 N -0.695 5.695 17 C 0.221 3.779 18 C -0.160 4.160 19 C 0.125 3.875 20 F -0.136 7.136 21 C -0.155 4.155 22 C 0.124 3.876 23 N -0.481 5.481 24 C 0.037 3.963 25 C -0.124 4.124 26 C -0.132 4.132 27 C 0.036 3.964 28 C -0.197 4.197 29 H 0.096 0.904 30 H 0.012 0.988 31 H 0.030 0.970 32 H 0.264 0.736 33 H 0.050 0.950 34 H 0.079 0.921 35 H 0.044 0.956 36 H 0.405 0.595 37 H 0.157 0.843 38 H 0.139 0.861 39 H 0.087 0.913 40 H 0.054 0.946 41 H 0.074 0.926 42 H 0.076 0.924 43 H 0.068 0.932 44 H 0.073 0.927 45 H 0.054 0.946 46 H 0.082 0.918 47 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.305 -8.649 -18.963 22.825 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.172 3.828 3 H 0.084 0.916 4 C -0.566 4.566 5 H 0.077 0.923 6 C -0.137 4.137 7 N -0.525 5.525 8 Si 0.727 3.273 9 H -0.206 1.206 10 H -0.211 1.211 11 H -0.200 1.200 12 N -0.336 5.336 13 C -0.057 4.057 14 C 0.397 3.603 15 O -0.452 6.452 16 N -0.344 5.344 17 C 0.123 3.877 18 C -0.181 4.181 19 C 0.104 3.896 20 F -0.114 7.114 21 C -0.176 4.176 22 C 0.029 3.971 23 N -0.202 5.202 24 C -0.089 4.089 25 C -0.162 4.162 26 C -0.170 4.170 27 C -0.091 4.091 28 C -0.220 4.220 29 H 0.114 0.886 30 H 0.031 0.969 31 H 0.049 0.951 32 H 0.074 0.926 33 H 0.069 0.931 34 H 0.098 0.902 35 H 0.063 0.937 36 H 0.242 0.758 37 H 0.175 0.825 38 H 0.157 0.843 39 H 0.105 0.895 40 H 0.073 0.927 41 H 0.093 0.907 42 H 0.095 0.905 43 H 0.087 0.913 44 H 0.092 0.908 45 H 0.072 0.928 46 H 0.101 0.899 47 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 9.602 -7.313 -18.893 22.419 hybrid contribution -0.345 -1.362 1.382 1.971 sum 9.257 -8.674 -17.511 21.623 Atomic orbital electron populations 1.22123 0.98131 0.99392 1.01011 1.18934 0.90702 0.94346 0.78824 0.91628 1.21309 1.31950 1.13096 0.90257 0.92310 1.24881 0.94899 0.94988 0.98960 1.69870 1.36205 1.22579 1.23857 0.86481 0.78691 0.79804 0.82321 1.20580 1.21082 1.19958 1.47638 1.50579 1.11583 1.23750 1.21520 1.02298 0.83470 0.98461 1.15997 0.79747 0.85105 0.79405 1.90885 1.62256 1.15152 1.76897 1.42997 1.48290 1.19051 1.24079 1.16994 0.89429 0.91230 0.90088 1.21402 1.02274 0.94869 0.99548 1.17300 0.96813 0.77698 0.97745 1.91502 1.95539 1.30870 1.93536 1.20754 0.99982 0.93358 1.03492 1.18264 0.92096 0.92444 0.94285 1.62415 1.13884 1.21475 1.22452 1.23386 0.95340 0.96444 0.93745 1.22499 0.97898 0.97289 0.98475 1.22420 0.96046 0.97576 1.00949 1.23026 0.96993 0.89438 0.99603 1.21319 0.96868 1.00756 1.03046 0.88601 0.96875 0.95086 0.92603 0.93133 0.90221 0.93741 0.75810 0.82530 0.84340 0.89509 0.92746 0.90749 0.90548 0.91293 0.90795 0.92758 0.89933 0.85545 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.45 8.95 37.16 0.33 -3.12 16 2 C 0.27 6.81 2.64 -69.08 -0.18 6.63 16 3 H 0.07 1.92 6.90 -51.93 -0.36 1.56 16 4 C -0.53 -14.04 8.37 -34.44 -0.29 -14.33 16 5 H 0.06 1.54 7.65 -52.49 -0.40 1.14 16 6 C 0.07 1.76 5.30 -17.82 -0.09 1.67 16 7 N -0.89 -24.83 11.32 55.43 0.63 -24.20 16 8 Si 0.90 20.84 29.54 -169.99 -5.02 15.82 16 9 H -0.28 -6.56 7.11 56.52 0.40 -6.15 16 10 H -0.29 -6.53 7.11 56.52 0.40 -6.13 16 11 H -0.27 -6.21 7.11 56.52 0.40 -5.80 16 12 N -0.60 -12.43 2.75 -181.00 -0.50 -12.93 16 13 C 0.09 1.35 9.49 59.85 0.57 1.92 16 14 C 0.70 14.28 8.13 -86.92 -0.71 13.58 16 15 O -0.57 -14.06 13.11 5.29 0.07 -13.99 16 16 N -0.69 -10.77 5.21 -14.25 -0.07 -10.84 16 17 C 0.22 3.33 6.29 -83.73 -0.53 2.80 16 18 C -0.16 -2.64 8.67 -39.29 -0.34 -2.98 16 19 C 0.12 1.87 7.29 -39.47 -0.29 1.58 16 20 F -0.14 -2.09 17.26 2.25 0.04 -2.06 16 21 C -0.16 -2.00 9.94 -39.27 -0.39 -2.39 16 22 C 0.12 1.49 4.86 -83.83 -0.41 1.09 16 23 N -0.48 -4.90 5.27 -167.20 -0.88 -5.79 16 24 C 0.04 0.33 6.43 -1.90 -0.01 0.32 16 25 C -0.12 -0.85 7.06 -24.87 -0.18 -1.02 16 26 C -0.13 -0.86 6.93 -25.38 -0.18 -1.03 16 27 C 0.04 0.30 6.48 -2.76 -0.02 0.28 16 28 C -0.20 -2.43 7.81 -39.18 -0.31 -2.74 16 29 H 0.10 2.47 6.07 -51.93 -0.32 2.15 16 30 H 0.01 0.27 8.14 -51.93 -0.42 -0.15 16 31 H 0.03 0.66 6.66 -51.93 -0.35 0.31 16 32 H 0.26 7.03 8.31 -40.82 -0.34 6.69 16 33 H 0.05 0.77 8.14 -51.93 -0.42 0.34 16 34 H 0.08 1.26 6.43 -51.93 -0.33 0.93 16 35 H 0.04 0.52 6.29 -51.93 -0.33 0.19 16 36 H 0.40 4.88 6.52 -40.82 -0.27 4.62 16 37 H 0.16 2.98 6.23 -52.49 -0.33 2.66 16 38 H 0.14 1.59 8.06 -52.49 -0.42 1.16 16 39 H 0.09 0.79 8.14 -51.92 -0.42 0.37 16 40 H 0.05 0.53 6.97 -51.93 -0.36 0.16 16 41 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 42 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 43 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 44 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 45 H 0.05 0.45 6.34 -51.93 -0.33 0.12 16 46 H 0.08 0.65 8.14 -51.92 -0.42 0.23 16 47 H 0.13 1.33 7.04 -52.48 -0.37 0.96 16 LS Contribution 375.02 15.07 5.65 5.65 Total: -1.00 -30.88 375.02 -9.77 -40.65 By element: Atomic # 1 Polarization: 12.11 SS G_CDS: -6.67 Total: 5.43 kcal Atomic # 6 Polarization: 5.26 SS G_CDS: -3.01 Total: 2.25 kcal Atomic # 7 Polarization: -52.93 SS G_CDS: -0.83 Total: -53.76 kcal Atomic # 8 Polarization: -14.06 SS G_CDS: 0.07 Total: -13.99 kcal Atomic # 9 Polarization: -2.09 SS G_CDS: 0.04 Total: -2.06 kcal Atomic # 14 Polarization: 20.84 SS G_CDS: -5.02 Total: 15.82 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -30.88 -9.77 -40.65 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000086284942.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.095 kcal (2) G-P(sol) polarization free energy of solvation -30.881 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.785 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.774 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.654 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.559 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds