Wall clock time and date at job start Tue Mar 31 2020 05:10:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09001 * 109.11697 * 2 1 4 4 C 1.53668 * 109.13288 * 240.83162 * 2 1 3 5 5 S 1.82205 * 103.28236 * 239.63053 * 4 2 1 6 6 C 1.76754 * 95.67969 * 0.02562 * 5 4 2 7 7 S 1.76193 * 125.01959 * 179.97438 * 6 5 4 8 8 C 1.80999 * 100.00071 * 180.02562 * 7 6 5 9 9 C 1.50703 * 109.47189 * 179.97438 * 8 7 6 10 10 O 1.21284 * 120.00029 * 0.02562 * 9 8 7 11 11 N 1.34780 * 120.00128 * 179.97438 * 9 8 7 12 12 C 1.37144 * 119.99817 * 355.64213 * 11 9 8 13 13 H 1.07993 * 119.99990 * 344.62501 * 12 11 9 14 14 C 1.38887 * 119.99788 * 164.62435 * 12 11 9 15 15 N 1.31423 * 120.00088 * 355.56915 * 14 12 11 16 16 Si 1.86797 * 119.99737 * 175.56541 * 14 12 11 17 17 H 1.48505 * 109.47037 * 179.97438 * 16 14 12 18 18 H 1.48494 * 109.47495 * 300.00145 * 16 14 12 19 19 H 1.48505 * 109.47001 * 60.00533 * 16 14 12 20 20 C 1.39790 * 119.99977 * 175.64196 * 11 9 8 21 21 C 1.38951 * 120.07666 * 98.67693 * 20 11 9 22 22 C 1.38092 * 119.91749 * 179.74234 * 21 20 11 23 23 C 1.38301 * 120.07728 * 0.52852 * 22 21 20 24 24 C 1.38310 * 120.15790 * 359.72600 * 23 22 21 25 25 C 1.38077 * 120.07720 * 0.02562 * 24 23 22 26 26 N 1.28534 * 109.96115 * 0.24080 * 6 5 4 27 27 H 1.08997 * 109.47074 * 179.16838 * 1 2 3 28 28 H 1.09001 * 109.46608 * 299.16667 * 1 2 3 29 29 H 1.09000 * 109.47024 * 59.16803 * 1 2 3 30 30 H 1.09007 * 110.65552 * 121.18324 * 4 2 1 31 31 H 1.09004 * 110.79816 * 358.14623 * 4 2 1 32 32 H 1.09001 * 109.46986 * 60.00607 * 8 7 6 33 33 H 1.09001 * 109.47338 * 300.00210 * 8 7 6 34 34 H 0.96998 * 120.00129 * 175.01454 * 15 14 12 35 35 H 1.07999 * 120.04076 * 359.97438 * 21 20 11 36 36 H 1.08001 * 119.95768 * 180.25212 * 22 21 20 37 37 H 1.07999 * 119.92332 * 179.74359 * 23 22 21 38 38 H 1.07996 * 119.96325 * 179.97438 * 24 23 22 39 39 H 1.08003 * 120.04113 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8870 1.0299 0.0000 4 6 2.0337 -0.7076 -1.2677 5 16 3.0179 -2.0931 -0.6108 6 6 2.7437 -1.7101 1.0929 7 16 3.3919 -2.6252 2.4519 8 6 2.7097 -1.6687 3.8288 9 6 3.1451 -2.2853 5.1332 10 8 3.8478 -3.2738 5.1320 11 7 2.7544 -1.7376 6.3011 12 6 2.0360 -0.5694 6.3042 13 1 1.9933 0.0407 5.4141 14 6 1.3633 -0.1710 7.4522 15 7 1.3427 -0.9545 8.5071 16 14 0.4879 1.4786 7.4966 17 1 -0.1488 1.6655 8.8252 18 1 1.4703 2.5669 7.2605 19 1 -0.5543 1.5146 6.4394 20 6 3.0814 -2.3603 7.5091 21 6 4.1709 -1.9167 8.2487 22 6 4.4879 -2.5308 9.4442 23 6 3.7289 -3.5932 9.9003 24 6 2.6469 -4.0408 9.1641 25 6 2.3212 -3.4282 7.9703 26 7 1.9970 -0.6688 1.1939 27 1 -0.3633 -1.0275 -0.0149 28 1 -0.3632 0.5009 0.8974 29 1 -0.3633 0.5267 -0.8824 30 1 2.6587 -0.0383 -1.8591 31 1 1.1983 -1.0773 -1.8624 32 1 1.6213 -1.6735 3.7705 33 1 3.0721 -0.6422 3.7729 34 1 0.9356 -0.6467 9.3320 35 1 4.7669 -1.0902 7.8907 36 1 5.3321 -2.1839 10.0215 37 1 3.9815 -4.0743 10.8336 38 1 2.0567 -4.8710 9.5230 39 1 1.4764 -3.7785 7.3957 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000089522208.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:10:33 Heat of formation + Delta-G solvation = 30.735070 kcal Electronic energy + Delta-G solvation = -23741.534470 eV Core-core repulsion = 20288.367494 eV Total energy + Delta-G solvation = -3453.166976 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 336.071 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -39.44706 -38.20842 -37.29693 -34.88115 -32.38089 -31.77045 -30.13151 -29.87158 -27.96492 -27.69569 -25.04486 -24.39319 -21.81185 -21.52705 -20.67154 -19.51687 -18.49591 -17.64066 -16.40826 -16.03464 -15.82100 -15.54710 -15.02465 -14.71054 -14.42849 -14.25259 -14.05922 -13.79040 -13.34645 -13.07820 -12.96669 -12.53155 -12.44158 -12.38204 -12.15717 -11.91053 -11.71929 -11.47566 -11.38377 -11.22523 -11.04300 -10.86549 -10.60132 -10.45219 -10.32563 -10.21223 -9.53025 -9.43866 -8.87535 -8.19738 -8.04186 -7.85864 -7.71957 -7.62366 -6.23433 -4.17582 0.94221 1.56297 1.78383 1.89397 2.40235 2.50386 2.52860 3.02479 3.12455 3.13348 3.53073 3.93921 4.13151 4.45085 4.48397 4.69007 4.84155 4.99858 5.02010 5.11653 5.22813 5.51998 5.66452 5.68164 5.72206 5.81293 5.90674 5.94910 6.01764 6.05074 6.41140 6.56737 6.80075 7.05743 7.19514 7.27469 7.33108 7.46810 7.54108 7.74225 7.94387 8.30038 8.84558 9.16711 9.58352 10.51214 Molecular weight = 336.07amu Principal moments of inertia in cm(-1) A = 0.014107 B = 0.003633 C = 0.003017 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1984.329111 B = 7704.649498 C = 9277.657286 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.071 3.929 3 H 0.106 0.894 4 C -0.115 4.115 5 S -0.171 6.171 6 C 0.164 3.836 7 S 0.068 5.932 8 C -0.113 4.113 9 C 0.475 3.525 10 O -0.582 6.582 11 N -0.404 5.404 12 C -0.351 4.351 13 H 0.105 0.895 14 C 0.044 3.956 15 N -0.847 5.847 16 Si 0.925 3.075 17 H -0.281 1.281 18 H -0.272 1.272 19 H -0.271 1.271 20 C 0.249 3.751 21 C -0.119 4.119 22 C -0.120 4.120 23 C -0.146 4.146 24 C -0.119 4.119 25 C -0.071 4.071 26 N -0.523 5.523 27 H 0.059 0.941 28 H 0.072 0.928 29 H 0.067 0.933 30 H 0.107 0.893 31 H 0.109 0.891 32 H 0.117 0.883 33 H 0.113 0.887 34 H 0.274 0.726 35 H 0.105 0.895 36 H 0.105 0.895 37 H 0.103 0.897 38 H 0.105 0.895 39 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.780 1.741 -10.945 11.110 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.046 4.046 3 H 0.123 0.877 4 C -0.266 4.266 5 S 0.056 5.944 6 C -0.243 4.243 7 S 0.299 5.701 8 C -0.265 4.265 9 C 0.263 3.737 10 O -0.468 6.468 11 N -0.120 5.120 12 C -0.477 4.477 13 H 0.122 0.878 14 C -0.163 4.163 15 N -0.482 5.482 16 Si 0.750 3.250 17 H -0.207 1.207 18 H -0.198 1.198 19 H -0.197 1.197 20 C 0.158 3.842 21 C -0.139 4.139 22 C -0.139 4.139 23 C -0.164 4.164 24 C -0.138 4.138 25 C -0.091 4.091 26 N -0.244 5.244 27 H 0.078 0.922 28 H 0.091 0.909 29 H 0.086 0.914 30 H 0.125 0.875 31 H 0.127 0.873 32 H 0.135 0.865 33 H 0.131 0.869 34 H 0.086 0.914 35 H 0.123 0.877 36 H 0.123 0.877 37 H 0.122 0.878 38 H 0.123 0.877 39 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 0.291 -0.012 -10.691 10.695 hybrid contribution -1.943 3.012 0.056 3.584 sum -1.652 3.000 -10.636 11.174 Atomic orbital electron populations 1.21872 0.92034 1.02800 1.02902 1.22428 0.98057 1.00128 0.83963 0.87665 1.25037 1.02353 0.97654 1.01582 1.86622 1.65679 1.40025 1.02029 1.29627 0.97170 0.97065 1.00412 1.86551 1.60457 1.32492 0.90626 1.23608 1.06098 1.03177 0.93655 1.19168 0.85096 0.85387 0.84068 1.90632 1.41679 1.27799 1.86674 1.41203 1.47095 1.21745 1.01947 1.19684 1.28190 0.98418 1.01436 0.87785 1.25311 0.96201 0.99191 0.95627 1.69922 1.41618 1.34455 1.02247 0.86027 0.79591 0.81486 0.77851 1.20657 1.19767 1.19651 1.16988 0.91313 0.90515 0.85370 1.20909 0.97540 0.99962 0.95451 1.20634 0.99767 0.97219 0.96248 1.20710 0.97444 0.98670 0.99612 1.20639 0.97777 1.00074 0.95347 1.20749 0.97341 0.95468 0.95537 1.70767 1.15019 1.09714 1.28921 0.92206 0.90913 0.91427 0.87491 0.87269 0.86499 0.86907 0.91437 0.87675 0.87686 0.87843 0.87669 0.87899 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.35 9.19 37.16 0.34 -1.01 16 2 C 0.07 0.80 4.07 -68.60 -0.28 0.52 16 3 H 0.11 1.08 8.14 -51.93 -0.42 0.66 16 4 C -0.11 -1.10 7.08 37.50 0.27 -0.84 16 5 S -0.17 -2.24 23.28 -107.50 -2.50 -4.75 16 6 C 0.16 2.54 7.72 51.38 0.40 2.94 16 7 S 0.07 1.20 21.45 -107.50 -2.31 -1.10 16 8 C -0.11 -2.18 4.16 36.01 0.15 -2.03 16 9 C 0.48 11.06 7.61 -10.98 -0.08 10.98 16 10 O -0.58 -14.82 15.84 5.55 0.09 -14.73 16 11 N -0.40 -9.86 2.66 -58.98 -0.16 -10.02 16 12 C -0.35 -8.45 9.25 -14.93 -0.14 -8.59 16 13 H 0.10 2.35 6.41 -52.49 -0.34 2.01 16 14 C 0.04 1.06 5.39 -17.49 -0.09 0.97 16 15 N -0.85 -21.18 9.79 55.49 0.54 -20.63 16 16 Si 0.92 18.89 29.56 -169.99 -5.02 13.87 16 17 H -0.28 -5.80 7.11 56.52 0.40 -5.40 16 18 H -0.27 -5.53 7.11 56.52 0.40 -5.13 16 19 H -0.27 -5.49 7.11 56.52 0.40 -5.08 16 20 C 0.25 6.06 2.23 -83.70 -0.19 5.88 16 21 C -0.12 -2.73 9.75 -39.37 -0.38 -3.11 16 22 C -0.12 -2.42 10.04 -39.61 -0.40 -2.81 16 23 C -0.15 -2.81 10.04 -39.53 -0.40 -3.21 16 24 C -0.12 -2.44 10.04 -39.61 -0.40 -2.84 16 25 C -0.07 -1.67 8.64 -39.37 -0.34 -2.01 16 26 N -0.52 -7.88 9.66 -54.83 -0.53 -8.41 16 27 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 28 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 29 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.11 0.83 8.14 -51.93 -0.42 0.40 16 31 H 0.11 0.87 7.67 -51.93 -0.40 0.47 16 32 H 0.12 2.23 8.14 -51.92 -0.42 1.81 16 33 H 0.11 2.11 7.55 -51.92 -0.39 1.71 16 34 H 0.27 6.66 8.32 -40.82 -0.34 6.32 16 35 H 0.11 2.37 8.06 -52.49 -0.42 1.95 16 36 H 0.11 1.79 8.06 -52.49 -0.42 1.37 16 37 H 0.10 1.66 8.06 -52.49 -0.42 1.23 16 38 H 0.11 1.84 8.06 -52.49 -0.42 1.42 16 39 H 0.10 2.43 8.06 -52.48 -0.42 2.00 16 LS Contribution 357.83 15.07 5.39 5.39 Total: -1.00 -28.23 357.83 -10.95 -39.18 By element: Atomic # 1 Polarization: 11.27 SS G_CDS: -4.91 Total: 6.36 kcal Atomic # 6 Polarization: -3.62 SS G_CDS: -1.54 Total: -5.17 kcal Atomic # 7 Polarization: -38.92 SS G_CDS: -0.14 Total: -39.06 kcal Atomic # 8 Polarization: -14.82 SS G_CDS: 0.09 Total: -14.73 kcal Atomic # 14 Polarization: 18.89 SS G_CDS: -5.02 Total: 13.87 kcal Atomic # 16 Polarization: -1.04 SS G_CDS: -4.81 Total: -5.85 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -28.23 -10.95 -39.18 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000089522208.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.919 kcal (2) G-P(sol) polarization free energy of solvation -28.232 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.687 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.952 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.184 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.735 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds