Wall clock time and date at job start Tue Mar 31 2020 05:10:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08995 * 109.11152 * 2 1 4 4 C 1.53663 * 109.13320 * 119.17625 * 2 1 3 5 5 S 1.82205 * 103.28113 * 120.47240 * 4 2 1 6 6 C 1.76752 * 95.67773 * 359.97438 * 5 4 2 7 7 S 1.76207 * 125.01711 * 179.97438 * 6 5 4 8 8 C 1.80998 * 100.00175 * 180.02562 * 7 6 5 9 9 C 1.50692 * 109.47204 * 180.02562 * 8 7 6 10 10 O 1.21279 * 120.00300 * 359.97438 * 9 8 7 11 11 N 1.34778 * 120.00005 * 180.02562 * 9 8 7 12 12 C 1.37139 * 120.00119 * 355.08703 * 11 9 8 13 13 H 1.07996 * 119.99757 * 335.12462 * 12 11 9 14 14 C 1.38884 * 120.00017 * 155.11951 * 12 11 9 15 15 N 1.31428 * 119.99839 * 156.42595 * 14 12 11 16 16 Si 1.86794 * 120.00325 * 336.42916 * 14 12 11 17 17 H 1.48502 * 109.47238 * 84.78968 * 16 14 12 18 18 H 1.48496 * 109.47007 * 324.79145 * 16 14 12 19 19 H 1.48498 * 109.47423 * 204.79087 * 16 14 12 20 20 C 1.39794 * 120.00068 * 175.09319 * 11 9 8 21 21 C 1.38957 * 120.07449 * 297.81461 * 20 11 9 22 22 C 1.38090 * 119.92061 * 179.74523 * 21 20 11 23 23 C 1.38311 * 120.07636 * 0.52820 * 22 21 20 24 24 C 1.38311 * 120.15611 * 359.72478 * 23 22 21 25 25 C 1.38085 * 120.07813 * 0.02562 * 24 23 22 26 26 N 1.28531 * 109.96629 * 0.24704 * 6 5 4 27 27 H 1.09005 * 109.46623 * 300.82280 * 1 2 3 28 28 H 1.08994 * 109.47685 * 60.82182 * 1 2 3 29 29 H 1.09003 * 109.46921 * 180.82700 * 1 2 3 30 30 H 1.08988 * 110.66190 * 2.01983 * 4 2 1 31 31 H 1.09003 * 110.79359 * 238.98156 * 4 2 1 32 32 H 1.09001 * 109.47448 * 59.99523 * 8 7 6 33 33 H 1.09007 * 109.46707 * 300.00004 * 8 7 6 34 34 H 0.97005 * 119.99549 * 180.02562 * 15 14 12 35 35 H 1.08001 * 120.03927 * 359.97438 * 21 20 11 36 36 H 1.07998 * 119.96371 * 180.25760 * 22 21 20 37 37 H 1.07995 * 119.92291 * 179.74588 * 23 22 21 38 38 H 1.07998 * 119.96175 * 179.97438 * 24 23 22 39 39 H 1.07995 * 120.04242 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8869 1.0299 0.0000 4 6 2.0337 -0.7077 1.2676 5 16 3.0205 -2.0913 0.6104 6 6 2.7471 -1.7074 -1.0931 7 16 3.3988 -2.6198 -2.4524 8 6 2.7171 -1.6628 -3.8292 9 6 3.1554 -2.2771 -5.1336 10 8 3.8597 -3.2644 -5.1326 11 7 2.7655 -1.7287 -6.3013 12 6 1.8893 -0.6737 -6.3048 13 1 1.2124 -0.5313 -5.4754 14 6 1.8726 0.2116 -7.3747 15 7 0.7916 0.9145 -7.6292 16 14 3.3863 0.4033 -8.4523 17 1 3.3840 -0.6483 -9.5008 18 1 4.6077 0.2683 -7.6185 19 1 3.3707 1.7423 -9.0942 20 6 3.2542 -2.2353 -7.5091 21 6 4.6157 -2.1898 -7.7833 22 6 5.0956 -2.6959 -8.9751 23 6 4.2215 -3.2378 -9.9001 24 6 2.8652 -3.2799 -9.6327 25 6 2.3789 -2.7803 -8.4408 26 7 2.0074 -0.6612 -1.1940 27 1 -0.3633 0.5266 0.8826 28 1 -0.3634 0.5010 -0.8972 29 1 -0.3633 -1.0276 0.0148 30 1 1.1969 -1.0791 1.8589 31 1 2.6566 -0.0395 1.8622 32 1 3.0776 -0.6358 -3.7715 33 1 1.6286 -1.6695 -3.7724 34 1 0.7798 1.5326 -8.3767 35 1 5.2981 -1.7624 -7.0636 36 1 6.1541 -2.6647 -9.1872 37 1 4.5991 -3.6292 -10.8331 38 1 2.1855 -3.7033 -10.3573 39 1 1.3198 -2.8139 -8.2324 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000089522209.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:10:36 Heat of formation + Delta-G solvation = 35.950770 kcal Electronic energy + Delta-G solvation = -23831.986108 eV Core-core repulsion = 20379.045302 eV Total energy + Delta-G solvation = -3452.940806 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 336.071 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -39.94738 -38.19727 -37.77454 -35.07203 -32.37378 -32.23076 -30.42638 -30.33889 -28.23457 -27.67441 -25.14148 -24.40107 -22.26548 -21.99595 -20.65982 -19.46490 -18.46173 -17.91088 -16.46258 -16.05024 -15.97360 -15.80787 -15.51090 -15.01774 -14.37816 -14.21558 -14.04120 -13.92676 -13.67945 -13.09544 -12.96972 -12.87175 -12.73757 -12.51001 -12.42690 -12.29901 -12.11991 -11.88821 -11.38225 -11.14172 -10.98892 -10.85105 -10.74701 -10.64469 -10.34737 -10.02301 -9.47311 -9.43594 -9.10859 -8.53494 -8.32673 -8.04078 -7.79830 -7.64892 -6.67032 -4.22979 0.92448 1.56705 1.76981 1.81845 1.90019 1.95532 2.36930 3.07927 3.24061 3.27563 3.40718 4.06646 4.09909 4.14854 4.33712 4.49767 4.68631 4.86109 5.02897 5.13653 5.25178 5.39005 5.43657 5.49646 5.55753 5.63826 5.67214 5.72111 5.96792 5.98982 6.03015 6.11866 6.26962 6.55281 6.84560 7.00844 7.05488 7.16048 7.28247 7.51794 7.76801 8.05798 8.63745 9.05539 9.32100 10.40193 Molecular weight = 336.07amu Principal moments of inertia in cm(-1) A = 0.017654 B = 0.003479 C = 0.003087 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1585.691672 B = 8047.514379 C = 9068.045169 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.070 3.930 3 H 0.106 0.894 4 C -0.114 4.114 5 S -0.171 6.171 6 C 0.163 3.837 7 S 0.063 5.937 8 C -0.113 4.113 9 C 0.489 3.511 10 O -0.569 6.569 11 N -0.409 5.409 12 C -0.361 4.361 13 H 0.117 0.883 14 C 0.080 3.920 15 N -0.844 5.844 16 Si 0.858 3.142 17 H -0.248 1.248 18 H -0.261 1.261 19 H -0.292 1.292 20 C 0.157 3.843 21 C -0.125 4.125 22 C -0.117 4.117 23 C -0.138 4.138 24 C -0.114 4.114 25 C -0.109 4.109 26 N -0.518 5.518 27 H 0.068 0.932 28 H 0.073 0.927 29 H 0.059 0.941 30 H 0.109 0.891 31 H 0.107 0.893 32 H 0.122 0.878 33 H 0.118 0.882 34 H 0.279 0.721 35 H 0.119 0.881 36 H 0.118 0.882 37 H 0.115 0.885 38 H 0.119 0.881 39 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.633 -1.970 9.100 9.452 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.046 4.046 3 H 0.124 0.876 4 C -0.266 4.266 5 S 0.056 5.944 6 C -0.243 4.243 7 S 0.293 5.707 8 C -0.265 4.265 9 C 0.278 3.722 10 O -0.453 6.453 11 N -0.124 5.124 12 C -0.486 4.486 13 H 0.134 0.866 14 C -0.130 4.130 15 N -0.477 5.477 16 Si 0.683 3.317 17 H -0.172 1.172 18 H -0.185 1.185 19 H -0.219 1.219 20 C 0.065 3.935 21 C -0.145 4.145 22 C -0.135 4.135 23 C -0.156 4.156 24 C -0.132 4.132 25 C -0.128 4.128 26 N -0.239 5.239 27 H 0.086 0.914 28 H 0.092 0.908 29 H 0.078 0.922 30 H 0.127 0.873 31 H 0.126 0.874 32 H 0.140 0.860 33 H 0.136 0.864 34 H 0.089 0.911 35 H 0.137 0.863 36 H 0.136 0.864 37 H 0.133 0.867 38 H 0.137 0.863 39 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 2.732 -3.539 8.974 10.026 hybrid contribution -0.761 2.387 -0.381 2.534 sum 1.971 -1.152 8.593 8.891 Atomic orbital electron populations 1.21869 0.91886 1.02795 1.03053 1.22433 0.98087 1.00238 0.83846 0.87594 1.25041 1.02311 0.97625 1.01593 1.86603 1.65586 1.40262 1.01987 1.29541 0.97536 0.96974 1.00272 1.86468 1.60669 1.32742 0.90804 1.23592 1.06222 1.03714 0.93009 1.19458 0.82396 0.85983 0.84344 1.90639 1.40523 1.27251 1.86867 1.41383 1.40232 1.29443 1.01327 1.19219 1.15697 1.03623 1.10058 0.86570 1.25157 0.96594 0.94888 0.96339 1.69782 1.25666 1.24303 1.27906 0.87218 0.83905 0.78302 0.82261 1.17250 1.18540 1.21921 1.17619 0.92041 0.95795 0.88041 1.21176 0.94930 1.00813 0.97562 1.20853 0.99245 0.99415 0.94006 1.20965 0.93628 1.01754 0.99264 1.20914 0.95374 1.00253 0.96691 1.21180 1.00299 0.97226 0.94128 1.70771 1.14752 1.09373 1.29016 0.91353 0.90763 0.92232 0.87255 0.87448 0.86003 0.86396 0.91077 0.86259 0.86405 0.86653 0.86303 0.85371 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.40 9.20 37.16 0.34 -1.06 16 2 C 0.07 0.82 4.04 -68.60 -0.28 0.54 16 3 H 0.11 1.14 8.14 -51.93 -0.42 0.72 16 4 C -0.11 -1.12 7.08 37.50 0.27 -0.85 16 5 S -0.17 -2.26 23.28 -107.50 -2.50 -4.77 16 6 C 0.16 2.55 7.72 51.38 0.40 2.95 16 7 S 0.06 1.09 21.45 -107.50 -2.31 -1.21 16 8 C -0.11 -2.18 4.28 36.00 0.15 -2.02 16 9 C 0.49 11.01 7.47 -10.99 -0.08 10.93 16 10 O -0.57 -13.71 15.42 5.56 0.09 -13.63 16 11 N -0.41 -9.64 2.52 -58.98 -0.15 -9.79 16 12 C -0.36 -9.01 9.18 -14.94 -0.14 -9.14 16 13 H 0.12 2.97 6.84 -52.49 -0.36 2.61 16 14 C 0.08 2.06 5.15 -17.49 -0.09 1.97 16 15 N -0.84 -22.44 13.96 55.49 0.77 -21.66 16 16 Si 0.86 20.03 23.44 -169.99 -3.98 16.04 16 17 H -0.25 -5.62 4.87 56.52 0.28 -5.35 16 18 H -0.26 -6.12 6.29 56.52 0.36 -5.76 16 19 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 20 C 0.16 3.56 2.29 -83.69 -0.19 3.37 16 21 C -0.12 -2.65 5.94 -39.37 -0.23 -2.88 16 22 C -0.12 -2.11 9.52 -39.61 -0.38 -2.48 16 23 C -0.14 -2.32 9.65 -39.53 -0.38 -2.70 16 24 C -0.11 -2.03 9.52 -39.61 -0.38 -2.41 16 25 C -0.11 -2.28 8.31 -39.37 -0.33 -2.61 16 26 N -0.52 -7.99 9.68 -54.83 -0.53 -8.52 16 27 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 28 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 29 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 30 H 0.11 0.88 7.66 -51.94 -0.40 0.48 16 31 H 0.11 0.85 8.14 -51.93 -0.42 0.43 16 32 H 0.12 2.35 8.14 -51.92 -0.42 1.92 16 33 H 0.12 2.25 7.49 -51.91 -0.39 1.87 16 34 H 0.28 7.00 8.31 -40.82 -0.34 6.66 16 35 H 0.12 2.56 7.83 -52.49 -0.41 2.14 16 36 H 0.12 1.75 8.06 -52.49 -0.42 1.33 16 37 H 0.12 1.54 8.06 -52.49 -0.42 1.12 16 38 H 0.12 1.74 8.06 -52.49 -0.42 1.32 16 39 H 0.13 2.69 8.06 -52.49 -0.42 2.27 16 LS Contribution 346.59 15.07 5.22 5.22 Total: -1.00 -28.91 346.59 -9.80 -38.71 By element: Atomic # 1 Polarization: 11.09 SS G_CDS: -5.09 Total: 6.00 kcal Atomic # 6 Polarization: -5.08 SS G_CDS: -1.32 Total: -6.40 kcal Atomic # 7 Polarization: -40.07 SS G_CDS: 0.10 Total: -39.97 kcal Atomic # 8 Polarization: -13.71 SS G_CDS: 0.09 Total: -13.63 kcal Atomic # 14 Polarization: 20.03 SS G_CDS: -3.98 Total: 16.04 kcal Atomic # 16 Polarization: -1.17 SS G_CDS: -4.81 Total: -5.98 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -28.91 -9.80 -38.71 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000089522209.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.662 kcal (2) G-P(sol) polarization free energy of solvation -28.915 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.747 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.796 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.711 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.951 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds