Wall clock time and date at job start Tue Mar 31 2020 06:11:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53000 * 109.47080 * 2 1 4 4 C 1.52992 * 109.47669 * 239.99525 * 2 1 3 5 5 C 1.50706 * 109.47040 * 60.00158 * 4 2 1 6 6 H 1.07996 * 119.99890 * 359.97438 * 5 4 2 7 7 C 1.37877 * 119.99802 * 180.02562 * 5 4 2 8 8 N 1.31513 * 120.00226 * 359.97438 * 7 5 4 9 9 Si 1.86803 * 119.99746 * 180.02562 * 7 5 4 10 10 H 1.48498 * 109.47052 * 59.99924 * 9 7 5 11 11 H 1.48491 * 109.47156 * 180.02562 * 9 7 5 12 12 H 1.48500 * 109.46873 * 299.99870 * 9 7 5 13 13 C 1.53007 * 109.46781 * 119.99525 * 2 1 3 14 14 N 1.46900 * 109.47300 * 300.00212 * 13 2 1 15 15 C 1.46898 * 111.00110 * 179.97438 * 14 13 2 16 16 H 1.09004 * 110.76324 * 31.80450 * 15 14 13 17 17 C 1.55132 * 110.70663 * 268.59602 * 15 14 13 18 18 C 1.54902 * 101.65582 * 205.96307 * 17 15 14 19 19 N 1.47847 * 104.79516 * 37.07376 * 18 17 15 20 20 C 1.39066 * 111.00228 * 213.63701 * 19 18 17 21 21 N 1.32401 * 119.71208 * 120.85983 * 20 19 18 22 22 C 1.31958 * 121.63395 * 180.02562 * 21 20 19 23 23 C 1.38058 * 120.88062 * 359.95794 * 22 21 20 24 24 C 1.38845 * 119.33304 * 0.02562 * 23 22 21 25 25 C 1.38417 * 118.49635 * 0.02562 * 24 23 22 26 26 Cl 1.73602 * 120.46034 * 180.02562 * 25 24 23 27 27 C 1.47447 * 108.56698 * 335.90263 * 19 18 17 28 28 H 1.08994 * 109.47716 * 300.00507 * 1 2 3 29 29 H 1.09008 * 109.46929 * 60.00393 * 1 2 3 30 30 H 1.08996 * 109.47304 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.46946 * 179.97438 * 3 2 1 32 32 H 1.08996 * 109.46730 * 299.99264 * 3 2 1 33 33 H 1.08997 * 109.47567 * 59.99908 * 3 2 1 34 34 H 1.08995 * 109.47636 * 180.02562 * 4 2 1 35 35 H 1.09010 * 109.47094 * 300.00515 * 4 2 1 36 36 H 0.97001 * 119.99608 * 180.02562 * 8 7 5 37 37 H 1.08999 * 109.46924 * 180.02562 * 13 2 1 38 38 H 1.08996 * 109.46943 * 60.00096 * 13 2 1 39 39 H 1.00904 * 110.99868 * 56.04058 * 14 13 2 40 40 H 1.09000 * 110.99587 * 324.05943 * 17 15 14 41 41 H 1.09005 * 110.98961 * 87.83461 * 17 15 14 42 42 H 1.09002 * 110.37447 * 278.24396 * 18 17 15 43 43 H 1.08997 * 110.37966 * 155.90242 * 18 17 15 44 44 H 1.08007 * 119.56316 * 180.02562 * 22 21 20 45 45 H 1.07995 * 120.32917 * 180.30097 * 23 22 21 46 46 H 1.07998 * 120.74931 * 179.97438 * 24 23 22 47 47 H 1.08998 * 109.89102 * 120.39241 * 27 19 18 48 48 H 1.08993 * 109.89157 * 241.42460 * 27 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 -1.2491 5 6 1.5378 -0.0109 -2.4797 6 1 0.9166 0.8669 -2.3807 7 6 1.8706 -0.4824 -3.7319 8 7 2.6268 -1.5517 -3.8524 9 14 1.2486 0.3985 -5.2572 10 1 1.7447 1.7982 -5.2573 11 1 1.7426 -0.3023 -6.4695 12 1 -0.2364 0.3996 -5.2572 13 6 2.0399 -0.7212 1.2494 14 7 1.5502 -0.0286 2.4488 15 6 2.0206 -0.6950 3.6704 16 1 2.9989 -1.1486 3.5110 17 6 0.9944 -1.7568 4.1460 18 6 1.2900 -1.8193 5.6652 19 7 1.5975 -0.4247 6.0477 20 6 2.5510 -0.3839 7.0592 21 7 3.6945 0.2523 6.8578 22 6 4.6257 0.3143 7.7907 23 6 4.4385 -0.2861 9.0197 24 6 3.2531 -0.9634 9.2723 25 6 2.2951 -1.0127 8.2744 26 17 0.7943 -1.8452 8.5356 27 6 2.0656 0.2981 4.8508 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3634 -1.0276 0.0005 31 1 3.1300 1.4425 0.0005 32 1 1.6767 1.9562 -0.8900 33 1 1.6767 1.9564 0.8899 34 1 3.1300 -0.7217 -1.2488 35 1 1.6767 -1.7490 -1.2491 36 1 2.8611 -1.8831 -4.7334 37 1 3.1299 -0.7208 1.2496 38 1 1.6766 -1.7488 1.2494 39 1 0.5436 0.0415 2.4401 40 1 -0.0267 -1.4238 3.9602 41 1 1.1811 -2.7202 3.6714 42 1 2.1476 -2.4638 5.8588 43 1 0.4151 -2.1774 6.2077 44 1 5.5462 0.8428 7.5906 45 1 5.2046 -0.2257 9.7785 46 1 3.0828 -1.4418 10.2255 47 1 1.4094 1.1445 4.6484 48 1 3.0861 0.6487 5.0049 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000089761647.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:11:16 Heat of formation + Delta-G solvation = 38.681072 kcal Electronic energy + Delta-G solvation = -26837.280241 eV Core-core repulsion = 23145.901530 eV Total energy + Delta-G solvation = -3691.378711 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 337.162 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -41.16831 -38.96602 -37.28203 -36.91384 -34.42689 -32.81256 -32.32535 -31.18283 -29.23657 -28.26445 -26.81798 -26.30695 -24.99928 -23.82264 -23.54821 -22.28408 -21.48044 -20.64476 -18.18772 -17.81665 -17.12757 -16.65464 -16.22109 -15.81740 -15.49485 -14.95604 -14.68120 -14.52995 -14.04698 -13.92424 -13.71054 -13.35554 -13.14093 -12.84966 -12.82058 -12.61191 -12.34540 -12.23158 -12.10268 -11.97010 -11.77369 -11.37662 -11.28590 -10.95850 -10.89585 -10.77465 -10.65510 -10.46426 -10.40248 -10.23886 -10.11668 -9.92016 -9.66449 -9.63377 -9.00260 -8.82550 -8.38271 -8.29963 -8.05704 -5.94690 -3.94718 0.57078 0.75541 1.74615 3.09958 3.35935 3.38974 3.40461 3.42820 3.95806 4.32179 4.39160 4.45179 4.50932 4.56354 4.67168 4.76220 4.93903 4.97891 5.20558 5.30611 5.38550 5.41044 5.50424 5.58138 5.66268 5.73137 5.73603 5.82763 5.91234 5.96116 6.03424 6.20091 6.27311 6.35314 6.39199 6.52816 6.68726 6.77400 6.81971 6.85638 7.23037 7.24754 7.28716 7.40553 7.52644 7.67345 7.72426 7.87218 8.05604 8.50047 9.10436 9.67932 11.16937 Molecular weight = 337.16amu Principal moments of inertia in cm(-1) A = 0.026834 B = 0.002070 C = 0.002001 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1043.203397 B =13525.084116 C =13988.432659 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.058 4.058 3 C -0.116 4.116 4 C 0.034 3.966 5 C -0.506 4.506 6 H 0.058 0.942 7 C 0.054 3.946 8 N -0.898 5.898 9 Si 0.888 3.112 10 H -0.277 1.277 11 H -0.289 1.289 12 H -0.278 1.278 13 C 0.071 3.929 14 N -0.673 5.673 15 C 0.073 3.927 16 H 0.083 0.917 17 C -0.162 4.162 18 C 0.051 3.949 19 N -0.466 5.466 20 C 0.327 3.673 21 N -0.503 5.503 22 C 0.133 3.867 23 C -0.196 4.196 24 C -0.045 4.045 25 C -0.108 4.108 26 Cl -0.050 7.050 27 C 0.039 3.961 28 H 0.033 0.967 29 H 0.064 0.936 30 H 0.040 0.960 31 H 0.039 0.961 32 H 0.054 0.946 33 H 0.043 0.957 34 H 0.015 0.985 35 H 0.012 0.988 36 H 0.259 0.741 37 H 0.065 0.935 38 H 0.023 0.977 39 H 0.342 0.658 40 H 0.081 0.919 41 H 0.080 0.920 42 H 0.055 0.945 43 H 0.094 0.906 44 H 0.164 0.836 45 H 0.143 0.857 46 H 0.144 0.856 47 H 0.090 0.910 48 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.901 -0.305 28.832 28.847 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.058 4.058 3 C -0.174 4.174 4 C -0.004 4.004 5 C -0.545 4.545 6 H 0.077 0.923 7 C -0.146 4.146 8 N -0.538 5.538 9 Si 0.716 3.284 10 H -0.203 1.203 11 H -0.215 1.215 12 H -0.204 1.204 13 C -0.057 4.057 14 N -0.304 5.304 15 C -0.039 4.039 16 H 0.101 0.899 17 C -0.201 4.201 18 C -0.075 4.075 19 N -0.182 5.182 20 C 0.094 3.906 21 N -0.217 5.217 22 C -0.025 4.025 23 C -0.217 4.217 24 C -0.072 4.072 25 C -0.140 4.140 26 Cl -0.021 7.021 27 C -0.087 4.087 28 H 0.052 0.948 29 H 0.083 0.917 30 H 0.059 0.941 31 H 0.058 0.942 32 H 0.073 0.927 33 H 0.062 0.938 34 H 0.033 0.967 35 H 0.030 0.970 36 H 0.069 0.931 37 H 0.084 0.916 38 H 0.042 0.958 39 H 0.162 0.838 40 H 0.100 0.900 41 H 0.098 0.902 42 H 0.073 0.927 43 H 0.112 0.888 44 H 0.181 0.819 45 H 0.160 0.840 46 H 0.162 0.838 47 H 0.108 0.892 48 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 0.989 0.611 28.023 28.047 hybrid contribution -0.486 -1.223 -0.253 1.340 sum 0.502 -0.611 27.770 27.781 Atomic orbital electron populations 1.21772 0.96093 1.00337 1.00446 1.20624 0.94698 0.96145 0.94353 1.21601 0.99784 0.95782 1.00193 1.19118 0.96093 0.94944 0.90201 1.21199 1.30785 1.11886 0.90607 0.92342 1.25018 0.95432 0.95125 0.99052 1.69957 1.37263 1.23207 1.23371 0.86722 0.79132 0.79840 0.82685 1.20302 1.21477 1.20373 1.22139 0.99655 0.94729 0.89214 1.60502 1.16577 1.52806 1.00543 1.22740 0.97974 0.92148 0.91022 0.89873 1.23525 1.01063 1.01233 0.94309 1.23162 1.01764 0.86109 0.96436 1.60691 1.34351 1.14085 1.09102 1.19838 0.87980 0.91204 0.91594 1.67703 1.00406 1.20339 1.33290 1.22751 0.96979 0.94189 0.88618 1.22013 0.98519 1.01635 0.99540 1.21424 0.91784 0.95818 0.98162 1.21410 0.91492 1.04970 0.96126 1.98363 1.31144 1.76442 1.96149 1.23046 1.03614 0.96843 0.85228 0.94789 0.91716 0.94132 0.94185 0.92719 0.93837 0.96714 0.96974 0.93134 0.91618 0.95830 0.83766 0.90001 0.90168 0.92693 0.88774 0.81899 0.83960 0.83787 0.89162 0.87817 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.38 7.89 37.16 0.29 -2.08 16 2 C -0.06 -1.14 0.60 -154.51 -0.09 -1.23 16 3 C -0.12 -2.25 8.06 37.16 0.30 -1.95 16 4 C 0.03 0.85 4.04 -27.88 -0.11 0.74 16 5 C -0.51 -13.85 7.65 -34.44 -0.26 -14.11 16 6 H 0.06 1.55 5.68 -52.49 -0.30 1.26 16 7 C 0.05 1.54 5.46 -17.82 -0.10 1.44 16 8 N -0.90 -26.90 13.29 55.43 0.74 -26.17 16 9 Si 0.89 21.66 29.54 -169.99 -5.02 16.64 16 10 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 11 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 12 H -0.28 -6.67 7.11 56.52 0.40 -6.26 16 13 C 0.07 1.20 4.51 -3.82 -0.02 1.19 16 14 N -0.67 -9.50 5.52 -104.80 -0.58 -10.08 16 15 C 0.07 0.90 3.27 -65.89 -0.22 0.69 16 16 H 0.08 1.10 7.83 -51.93 -0.41 0.69 16 17 C -0.16 -1.73 6.66 -24.60 -0.16 -1.90 16 18 C 0.05 0.52 5.27 -2.30 -0.01 0.51 16 19 N -0.47 -5.35 4.97 -169.95 -0.84 -6.19 16 20 C 0.33 3.67 6.16 -154.93 -0.95 2.71 16 21 N -0.50 -5.54 7.95 -12.40 -0.10 -5.64 16 22 C 0.13 1.05 11.17 -17.56 -0.20 0.86 16 23 C -0.20 -1.24 10.10 -39.42 -0.40 -1.64 16 24 C -0.05 -0.33 9.97 -39.29 -0.39 -0.72 16 25 C -0.11 -1.04 6.15 -39.16 -0.24 -1.28 16 26 Cl -0.05 -0.45 25.78 -51.86 -1.34 -1.79 16 27 C 0.04 0.48 6.52 -2.83 -0.02 0.46 16 28 H 0.03 0.53 6.57 -51.93 -0.34 0.19 16 29 H 0.06 1.30 6.62 -51.92 -0.34 0.96 16 30 H 0.04 0.74 8.14 -51.93 -0.42 0.31 16 31 H 0.04 0.79 8.14 -51.93 -0.42 0.36 16 32 H 0.05 1.13 6.62 -51.93 -0.34 0.79 16 33 H 0.04 0.76 7.60 -51.93 -0.39 0.36 16 34 H 0.01 0.40 8.14 -51.93 -0.42 -0.03 16 35 H 0.01 0.32 8.14 -51.92 -0.42 -0.10 16 36 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 37 H 0.07 1.17 8.08 -51.93 -0.42 0.75 16 38 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 39 H 0.34 4.67 6.25 -39.29 -0.25 4.42 16 40 H 0.08 0.87 7.77 -51.93 -0.40 0.47 16 41 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 42 H 0.05 0.57 7.78 -51.93 -0.40 0.16 16 43 H 0.09 0.91 6.41 -51.93 -0.33 0.58 16 44 H 0.16 0.85 8.06 -52.48 -0.42 0.42 16 45 H 0.14 0.48 8.06 -52.49 -0.42 0.05 16 46 H 0.14 0.70 8.06 -52.49 -0.42 0.28 16 47 H 0.09 1.16 8.03 -51.93 -0.42 0.74 16 48 H 0.10 1.36 5.91 -51.93 -0.31 1.05 16 LS Contribution 384.32 15.07 5.79 5.79 Total: -1.00 -30.20 384.32 -11.53 -41.73 By element: Atomic # 1 Polarization: 9.62 SS G_CDS: -7.60 Total: 2.02 kcal Atomic # 6 Polarization: -13.73 SS G_CDS: -2.58 Total: -16.31 kcal Atomic # 7 Polarization: -47.30 SS G_CDS: -0.78 Total: -48.08 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.02 Total: 16.64 kcal Atomic # 17 Polarization: -0.45 SS G_CDS: -1.34 Total: -1.79 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -30.20 -11.53 -41.73 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000089761647.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.411 kcal (2) G-P(sol) polarization free energy of solvation -30.200 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.211 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.530 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.730 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.681 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds