Wall clock time and date at job start Tue Mar 31 2020 05:06:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86799 * 119.99897 * 2 1 4 4 H 1.48500 * 109.46826 * 179.97438 * 3 2 1 5 5 H 1.48494 * 109.47437 * 300.00047 * 3 2 1 6 6 H 1.48506 * 109.47076 * 60.00159 * 3 2 1 7 7 C 1.37873 * 119.99783 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00030 * 180.02562 * 7 2 1 9 9 C 1.50699 * 119.99839 * 359.97438 * 7 2 1 10 10 C 1.53007 * 109.46866 * 180.02562 * 9 7 2 11 11 N 1.46496 * 109.47217 * 175.05990 * 10 9 7 12 12 N 1.29024 * 126.44120 * 275.23452 * 11 10 9 13 13 N 1.28737 * 108.80641 * 180.24256 * 12 11 10 14 14 N 1.28834 * 109.40194 * 359.75137 * 13 12 11 15 15 C 1.31071 * 107.98951 * 359.97438 * 14 13 12 16 16 C 1.50699 * 126.65840 * 179.97438 * 15 14 13 17 17 C 1.50703 * 109.47034 * 275.52742 * 16 15 14 18 18 C 1.38245 * 119.98745 * 84.79119 * 17 16 15 19 19 C 1.38212 * 120.01070 * 180.02562 * 18 17 16 20 20 C 1.38321 * 119.98996 * 0.24739 * 19 18 17 21 21 Br 1.89100 * 120.01077 * 179.72639 * 20 19 18 22 22 C 1.38324 * 119.97816 * 359.42898 * 20 19 18 23 23 C 1.38210 * 119.98960 * 0.59645 * 22 20 19 24 24 H 0.97006 * 119.99933 * 359.97438 * 1 2 3 25 25 H 1.09000 * 109.47069 * 60.00926 * 9 7 2 26 26 H 1.09000 * 109.47380 * 300.00001 * 9 7 2 27 27 H 1.09003 * 109.47115 * 55.06265 * 10 9 7 28 28 H 1.09002 * 109.47074 * 295.06008 * 10 9 7 29 29 H 1.09000 * 109.47108 * 155.53187 * 16 15 14 30 30 H 1.08994 * 109.47636 * 35.52959 * 16 15 14 31 31 H 1.08002 * 119.99272 * 359.97438 * 18 17 16 32 32 H 1.08004 * 120.00688 * 179.97438 * 19 18 17 33 33 H 1.08007 * 120.00613 * 180.29280 * 22 20 19 34 34 H 1.08000 * 119.99851 * 179.67497 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3463 0.0006 5 1 1.8904 2.3965 -1.2124 6 1 1.8904 2.3964 1.2126 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2509 -2.4991 -0.0005 10 6 2.2452 -3.6621 -0.0005 11 7 1.5166 -4.9274 0.1184 12 7 1.1212 -5.4842 1.2131 13 7 0.5208 -6.5859 0.9251 14 7 0.5171 -6.7499 -0.3527 15 6 1.1305 -5.7259 -0.8941 16 6 1.3647 -5.4917 -2.3642 17 6 2.6093 -6.2229 -2.7974 18 6 2.5386 -7.5571 -3.1522 19 6 3.6798 -8.2283 -3.5490 20 6 4.8937 -7.5661 -3.5862 21 35 6.4567 -8.4859 -4.1216 22 6 4.9627 -6.2293 -3.2375 23 6 3.8211 -5.5591 -2.8403 24 1 -0.4850 0.8401 0.0004 25 1 0.6240 -2.5567 -0.8904 26 1 0.6246 -2.5570 0.8897 27 1 2.9286 -3.5558 0.8419 28 1 2.8121 -3.6554 -0.9315 29 1 1.4883 -4.4243 -2.5469 30 1 0.5104 -5.8609 -2.9316 31 1 1.5916 -8.0753 -3.1185 32 1 3.6246 -9.2708 -3.8258 33 1 5.9095 -5.7106 -3.2709 34 1 3.8758 -4.5168 -2.5630 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000089787959.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:06:41 Heat of formation + Delta-G solvation = 125.706886 kcal Electronic energy + Delta-G solvation = -20001.514785 eV Core-core repulsion = 16789.701489 eV Total energy + Delta-G solvation = -3211.813296 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 336.028 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -43.75996 -39.63612 -35.92380 -34.51942 -33.27509 -32.08122 -31.32356 -30.62073 -29.93566 -27.02604 -25.79919 -23.37668 -22.92428 -22.66980 -21.51902 -20.74478 -17.50361 -16.86834 -16.51836 -16.04394 -15.71716 -15.40032 -14.98024 -14.66106 -14.17974 -13.70648 -13.60321 -13.29422 -12.87111 -12.78493 -12.28295 -12.02993 -11.80902 -11.59725 -11.37687 -11.19921 -11.13790 -11.02041 -10.77386 -10.59342 -10.54545 -10.43981 -9.91488 -9.59397 -9.50021 -9.27429 -8.86535 -8.66892 -6.30448 -4.38136 0.74664 1.06370 1.36023 1.68650 2.51592 2.58424 3.14956 3.23849 3.25770 3.31486 4.20899 4.28837 4.43098 4.50315 4.59257 4.66819 5.00976 5.07205 5.08498 5.20807 5.37064 5.49511 5.59539 5.67042 5.73727 5.82656 5.92753 5.94316 6.02209 6.18367 6.27053 6.50437 6.59593 7.16590 7.25868 7.62274 7.92882 8.66659 9.01776 9.29057 10.80491 Molecular weight = 336.03amu Principal moments of inertia in cm(-1) A = 0.013988 B = 0.003010 C = 0.002600 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2001.201734 B = 9299.043375 C =10765.542225 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.886 5.886 2 C 0.064 3.936 3 Si 0.900 3.100 4 H -0.270 1.270 5 H -0.281 1.281 6 H -0.281 1.281 7 C -0.533 4.533 8 H 0.064 0.936 9 C 0.013 3.987 10 C 0.108 3.892 11 N -0.281 5.281 12 N -0.090 5.090 13 N -0.095 5.095 14 N -0.310 5.310 15 C 0.177 3.823 16 C -0.001 4.001 17 C -0.067 4.067 18 C -0.093 4.093 19 C -0.092 4.092 20 C -0.090 4.090 21 Br -0.056 7.056 22 C -0.090 4.090 23 C -0.105 4.105 24 H 0.265 0.735 25 H 0.027 0.973 26 H 0.032 0.968 27 H 0.102 0.898 28 H 0.097 0.903 29 H 0.110 0.890 30 H 0.116 0.884 31 H 0.138 0.862 32 H 0.134 0.866 33 H 0.135 0.865 34 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.184 -14.645 -11.682 21.818 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.139 4.139 3 Si 0.727 3.273 4 H -0.195 1.195 5 H -0.207 1.207 6 H -0.207 1.207 7 C -0.572 4.572 8 H 0.082 0.918 9 C -0.025 4.025 10 C -0.011 4.011 11 N -0.083 5.083 12 N -0.076 5.076 13 N -0.088 5.088 14 N -0.161 5.161 15 C -0.100 4.100 16 C -0.041 4.041 17 C -0.069 4.069 18 C -0.112 4.112 19 C -0.111 4.111 20 C -0.169 4.169 21 Br 0.029 6.971 22 C -0.110 4.110 23 C -0.123 4.123 24 H 0.075 0.925 25 H 0.045 0.955 26 H 0.050 0.950 27 H 0.121 0.879 28 H 0.115 0.885 29 H 0.129 0.871 30 H 0.135 0.865 31 H 0.156 0.844 32 H 0.151 0.849 33 H 0.153 0.847 34 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 11.121 -15.625 -10.754 21.988 hybrid contribution 0.433 1.838 -0.429 1.937 sum 11.554 -13.787 -11.183 21.181 Atomic orbital electron populations 1.69969 1.06219 1.27299 1.48805 1.24996 0.94890 0.99605 0.94427 0.86405 0.79982 0.82998 0.77888 1.19474 1.20737 1.20735 1.20908 0.93141 0.89693 1.53408 0.91824 1.19503 0.93836 0.90001 0.99140 1.22941 0.96273 0.77690 1.04235 1.48999 1.36297 1.19460 1.03556 1.78849 1.12857 1.05186 1.10734 1.78509 1.15130 1.08939 1.06238 1.74834 1.18842 1.20671 1.01732 1.25538 0.99640 0.89799 0.95070 1.19120 0.97188 1.02745 0.85082 1.19759 0.94316 0.94434 0.98396 1.21151 0.98833 0.93636 0.97568 1.21109 0.90873 1.00233 0.98931 1.21828 0.92487 0.95755 1.06819 1.96715 1.33724 1.76507 1.90141 1.21104 0.99410 0.92437 0.98005 1.21225 0.91428 1.00714 0.98969 0.92479 0.95497 0.94950 0.87947 0.88476 0.87137 0.86548 0.84367 0.84858 0.84740 0.84456 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.53 13.29 55.43 0.74 -23.79 16 2 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 3 Si 0.90 19.67 29.54 -169.99 -5.02 14.65 16 4 H -0.27 -5.71 7.11 56.52 0.40 -5.30 16 5 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 6 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 7 C -0.53 -13.06 9.11 -34.44 -0.31 -13.38 16 8 H 0.06 1.46 7.74 -52.49 -0.41 1.06 16 9 C 0.01 0.30 5.30 -27.88 -0.15 0.15 16 10 C 0.11 1.86 6.06 -4.04 -0.02 1.84 16 11 N -0.28 -5.04 3.35 -58.27 -0.19 -5.24 16 12 N -0.09 -1.82 13.29 60.35 0.80 -1.02 16 13 N -0.09 -1.91 13.43 60.35 0.81 -1.10 16 14 N -0.31 -5.62 12.36 32.70 0.40 -5.21 16 15 C 0.18 2.85 7.37 -155.43 -1.15 1.71 16 16 C 0.00 -0.01 5.55 -29.03 -0.16 -0.18 16 17 C -0.07 -0.73 5.12 -104.62 -0.54 -1.27 16 18 C -0.09 -0.96 9.72 -39.59 -0.38 -1.34 16 19 C -0.09 -0.90 9.79 -39.56 -0.39 -1.29 16 20 C -0.09 -0.92 6.22 -39.52 -0.25 -1.16 16 21 Br -0.06 -0.53 33.70 -68.01 -2.29 -2.82 16 22 C -0.09 -0.90 9.79 -39.56 -0.39 -1.29 16 23 C -0.10 -1.09 9.68 -39.59 -0.38 -1.47 16 24 H 0.27 6.95 8.31 -40.82 -0.34 6.61 16 25 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 26 H 0.03 0.83 8.14 -51.93 -0.42 0.41 16 27 H 0.10 1.72 8.14 -51.93 -0.42 1.30 16 28 H 0.10 1.37 6.37 -51.93 -0.33 1.04 16 29 H 0.11 1.22 7.36 -51.93 -0.38 0.84 16 30 H 0.12 1.15 8.12 -51.93 -0.42 0.73 16 31 H 0.14 1.26 8.06 -52.49 -0.42 0.84 16 32 H 0.13 1.09 8.06 -52.48 -0.42 0.67 16 33 H 0.13 1.15 8.06 -52.48 -0.42 0.73 16 34 H 0.14 1.28 7.04 -52.49 -0.37 0.91 16 LS Contribution 322.96 15.07 4.87 4.87 Total: -1.00 -29.59 322.96 -7.68 -37.27 By element: Atomic # 1 Polarization: 2.08 SS G_CDS: -3.58 Total: -1.50 kcal Atomic # 6 Polarization: -11.90 SS G_CDS: -4.21 Total: -16.11 kcal Atomic # 7 Polarization: -38.92 SS G_CDS: 2.56 Total: -36.36 kcal Atomic # 14 Polarization: 19.67 SS G_CDS: -5.02 Total: 14.65 kcal Atomic # 35 Polarization: -0.53 SS G_CDS: -2.29 Total: -2.82 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -29.59 -7.68 -37.27 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000089787959.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 162.981 kcal (2) G-P(sol) polarization free energy of solvation -29.591 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 133.390 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.683 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.274 kcal (6) G-S(sol) free energy of system = (1) + (5) 125.707 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds