Wall clock time and date at job start Tue Mar 31 2020 05:08:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38349 * 120.00982 * 2 1 4 4 Br 1.89098 * 120.00904 * 0.02562 * 3 2 1 5 5 C 1.38301 * 119.97989 * 180.25656 * 3 2 1 6 6 C 1.38242 * 119.99355 * 359.75839 * 5 3 2 7 7 C 1.38224 * 120.00668 * 0.02562 * 6 5 3 8 8 C 1.38200 * 120.00368 * 179.76426 * 2 1 3 9 9 C 1.50707 * 119.99083 * 0.02562 * 8 2 1 10 10 N 1.46895 * 109.47122 * 76.83377 * 9 8 2 11 11 C 1.46904 * 111.00032 * 70.31978 * 10 9 8 12 12 C 1.50698 * 109.47039 * 190.00186 * 11 10 9 13 13 H 1.07995 * 120.00241 * 359.97438 * 12 11 10 14 14 C 1.37878 * 119.99982 * 179.97438 * 12 11 10 15 15 N 1.31516 * 120.00323 * 179.97438 * 14 12 11 16 16 Si 1.86802 * 119.99846 * 359.97438 * 14 12 11 17 17 H 1.48501 * 109.47231 * 89.99905 * 16 14 12 18 18 H 1.48508 * 109.47033 * 209.99845 * 16 14 12 19 19 H 1.48499 * 109.47424 * 329.99833 * 16 14 12 20 20 C 1.46895 * 110.99978 * 194.27315 * 10 9 8 21 21 C 1.52996 * 109.47289 * 71.52302 * 20 10 9 22 22 C 1.47200 * 109.47280 * 179.64438 * 21 20 10 23 23 N 7.01604 * 48.28560 * 186.76882 * 2 1 3 24 24 H 1.08993 * 109.47120 * 273.95957 * 1 2 3 25 25 H 1.09001 * 109.46805 * 33.95783 * 1 2 3 26 26 H 1.08999 * 109.47270 * 153.95469 * 1 2 3 27 27 H 1.07999 * 120.00661 * 179.79261 * 5 3 2 28 28 H 1.07993 * 120.00083 * 179.97438 * 6 5 3 29 29 H 1.07995 * 119.99072 * 179.97438 * 7 6 5 30 30 H 1.09000 * 109.47109 * 316.82828 * 9 8 2 31 31 H 1.08999 * 109.46577 * 196.83329 * 9 8 2 32 32 H 1.09004 * 109.47092 * 309.99853 * 11 10 9 33 33 H 1.09003 * 109.47309 * 69.99624 * 11 10 9 34 34 H 0.96997 * 120.00240 * 180.02562 * 15 14 12 35 35 H 1.08998 * 109.47115 * 191.52217 * 20 10 9 36 36 H 1.08999 * 109.47252 * 311.51791 * 20 10 9 37 37 H 1.09007 * 109.47257 * 299.64650 * 21 20 10 38 38 H 1.09006 * 109.47338 * 59.64505 * 21 20 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1990 1.1980 0.0000 4 35 1.2540 2.8360 0.0007 5 6 3.5820 1.1973 -0.0054 6 6 4.2724 -0.0003 -0.0057 7 6 3.5807 -1.1970 -0.0012 8 6 2.1981 -1.1968 0.0049 9 6 1.4444 -2.5019 0.0097 10 7 0.9269 -2.7734 -1.3380 11 6 2.0179 -3.1066 -2.2636 12 6 1.4882 -3.1370 -3.6741 13 1 0.4455 -2.9299 -3.8640 14 6 2.3350 -3.4291 -4.7223 15 7 1.8727 -3.4561 -5.9533 16 14 4.1389 -3.7865 -4.3941 17 1 4.3215 -5.2426 -4.1663 18 1 4.9484 -3.3633 -5.5650 19 1 4.5808 -3.0379 -3.1901 20 6 -0.0831 -3.8396 -1.3091 21 6 -1.3631 -3.3122 -0.6579 22 6 -2.3781 -4.3781 -0.6366 23 7 -3.1616 -5.2008 -0.6173 24 1 -0.3633 0.0710 1.0251 25 1 -0.3633 0.8524 -0.5741 26 1 -0.3634 -0.9233 -0.4512 27 1 4.1225 2.1323 -0.0088 28 1 5.3524 -0.0010 -0.0103 29 1 4.1203 -2.1325 -0.0018 30 1 0.6134 -2.4390 0.7123 31 1 2.1145 -3.3072 0.3107 32 1 2.8026 -2.3540 -2.1863 33 1 2.4259 -4.0844 -2.0075 34 1 2.4683 -3.6620 -6.6906 35 1 -0.2999 -4.1624 -2.3274 36 1 0.2962 -4.6839 -0.7334 37 1 -1.1476 -2.9952 0.3626 38 1 -1.7390 -2.4639 -1.2300 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000090590582.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:08:08 Heat of formation + Delta-G solvation = 55.179374 kcal Electronic energy + Delta-G solvation = -20842.803659 eV Core-core repulsion = 17731.472404 eV Total energy + Delta-G solvation = -3111.331255 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 336.053 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -39.71120 -37.48423 -36.13580 -33.05464 -32.74290 -32.46276 -30.93897 -29.48468 -27.87906 -26.67211 -25.22245 -22.93219 -21.55341 -21.14938 -19.82870 -17.44826 -16.98515 -16.27178 -15.73625 -15.26371 -15.00430 -14.54130 -14.45920 -13.81489 -13.69092 -13.33598 -13.12304 -12.95246 -12.58736 -12.39875 -12.23098 -12.15999 -12.08382 -11.97598 -11.77780 -11.22506 -10.98644 -10.85159 -10.76414 -10.73742 -10.60234 -10.21724 -10.02622 -9.90474 -9.34843 -8.64305 -8.53490 -8.45732 -7.65045 -6.10967 -4.08857 1.25648 1.42409 1.74503 2.91210 2.96081 3.22775 3.31122 3.31794 3.67490 4.12023 4.36182 4.75232 4.84170 4.95956 5.09811 5.20430 5.24317 5.29602 5.35632 5.43924 5.54851 5.62181 5.74096 5.78294 5.83347 5.92031 6.03257 6.13538 6.33408 6.40721 6.42881 6.51148 6.68396 6.75941 6.82496 6.96721 7.47670 7.68390 7.73285 7.83783 8.54580 8.96752 9.50233 11.01885 Molecular weight = 336.05amu Principal moments of inertia in cm(-1) A = 0.009456 B = 0.004886 C = 0.003746 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2960.434254 B = 5728.770585 C = 7472.912964 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.027 4.027 3 C -0.095 4.095 4 Br -0.061 7.061 5 C -0.093 4.093 6 C -0.124 4.124 7 C -0.092 4.092 8 C -0.061 4.061 9 C 0.083 3.917 10 N -0.517 5.517 11 C 0.162 3.838 12 C -0.511 4.511 13 H 0.083 0.917 14 C 0.071 3.929 15 N -0.897 5.897 16 Si 0.870 3.130 17 H -0.278 1.278 18 H -0.286 1.286 19 H -0.266 1.266 20 C 0.063 3.937 21 C -0.030 4.030 22 C 0.218 3.782 23 N -0.452 5.452 24 H 0.067 0.933 25 H 0.073 0.927 26 H 0.095 0.905 27 H 0.126 0.874 28 H 0.126 0.874 29 H 0.124 0.876 30 H 0.080 0.920 31 H 0.039 0.961 32 H 0.036 0.964 33 H -0.015 1.015 34 H 0.264 0.736 35 H 0.104 0.896 36 H 0.033 0.967 37 H 0.101 0.899 38 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.854 11.005 16.042 19.542 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.030 4.030 3 C -0.174 4.174 4 Br 0.025 6.975 5 C -0.113 4.113 6 C -0.143 4.143 7 C -0.111 4.111 8 C -0.062 4.062 9 C -0.045 4.045 10 N -0.241 5.241 11 C 0.037 3.963 12 C -0.550 4.550 13 H 0.101 0.899 14 C -0.131 4.131 15 N -0.536 5.536 16 Si 0.697 3.303 17 H -0.204 1.204 18 H -0.212 1.212 19 H -0.190 1.190 20 C -0.067 4.067 21 C -0.070 4.070 22 C -0.100 4.100 23 N -0.129 5.129 24 H 0.086 0.914 25 H 0.092 0.908 26 H 0.114 0.886 27 H 0.144 0.856 28 H 0.144 0.856 29 H 0.141 0.859 30 H 0.098 0.902 31 H 0.057 0.943 32 H 0.054 0.946 33 H 0.003 0.997 34 H 0.074 0.926 35 H 0.122 0.878 36 H 0.051 0.949 37 H 0.119 0.881 38 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 0.147 10.780 15.696 19.042 hybrid contribution 2.172 -0.903 0.143 2.357 sum 2.320 9.878 15.839 18.811 Atomic orbital electron populations 1.21124 0.90334 1.05318 1.02039 1.19563 0.96743 0.90552 0.96129 1.21642 0.94532 0.90898 1.10351 1.96614 1.76100 1.27075 1.97755 1.20978 0.92068 0.98769 0.99514 1.21020 0.99859 0.91899 1.01551 1.21208 0.93875 0.98316 0.97672 1.19622 0.93123 0.94353 0.99109 1.21138 0.97695 0.92719 0.92905 1.61921 1.14915 1.41811 1.05434 1.20237 0.89617 0.94060 0.92428 1.20984 0.98322 1.47417 0.88232 0.89918 1.24869 0.98154 0.95034 0.95035 1.69879 1.35686 1.49206 0.98793 0.86941 0.86204 0.78838 0.78271 1.20400 1.21170 1.19034 1.21960 0.89738 0.92162 1.02825 1.19479 0.90794 0.92874 1.03897 1.29273 0.93908 0.94205 0.92635 1.81190 1.11393 1.10878 1.09449 0.91393 0.90839 0.88613 0.85580 0.85612 0.85852 0.90167 0.94256 0.94558 0.99702 0.92616 0.87756 0.94908 0.88121 0.86400 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.56 8.85 36.01 0.32 -1.24 16 2 C -0.03 -0.38 5.88 -104.59 -0.62 -0.99 16 3 C -0.10 -1.28 6.22 -39.52 -0.25 -1.53 16 4 Br -0.06 -0.73 31.87 -68.01 -2.17 -2.90 16 5 C -0.09 -1.18 9.79 -39.56 -0.39 -1.57 16 6 C -0.12 -1.57 10.05 -39.59 -0.40 -1.97 16 7 C -0.09 -1.27 8.73 -39.58 -0.35 -1.61 16 8 C -0.06 -0.86 4.67 -104.62 -0.49 -1.35 16 9 C 0.08 1.12 4.06 -4.98 -0.02 1.10 16 10 N -0.52 -8.61 3.59 -237.52 -0.85 -9.46 16 11 C 0.16 3.45 3.64 -4.97 -0.02 3.44 16 12 C -0.51 -13.29 8.85 -34.44 -0.30 -13.60 16 13 H 0.08 2.33 7.49 -52.49 -0.39 1.93 16 14 C 0.07 1.95 5.47 -17.82 -0.10 1.86 16 15 N -0.90 -26.46 13.96 55.43 0.77 -25.69 16 16 Si 0.87 20.48 27.47 -169.99 -4.67 15.82 16 17 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 18 H -0.29 -6.80 7.11 56.52 0.40 -6.39 16 19 H -0.27 -5.92 6.54 56.52 0.37 -5.55 16 20 C 0.06 0.94 4.77 -3.83 -0.02 0.92 16 21 C -0.03 -0.34 4.67 -29.52 -0.14 -0.48 16 22 C 0.22 2.98 15.43 -20.75 -0.32 2.66 16 23 N -0.45 -7.40 18.54 42.16 0.78 -6.62 16 24 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 25 H 0.07 0.90 6.84 -51.93 -0.36 0.54 16 26 H 0.10 1.14 4.44 -51.93 -0.23 0.91 16 27 H 0.13 1.35 8.06 -52.49 -0.42 0.92 16 28 H 0.13 1.29 8.06 -52.49 -0.42 0.87 16 29 H 0.12 1.59 8.02 -52.49 -0.42 1.17 16 30 H 0.08 0.85 5.56 -51.93 -0.29 0.56 16 31 H 0.04 0.52 7.90 -51.93 -0.41 0.11 16 32 H 0.04 0.81 5.51 -51.93 -0.29 0.52 16 33 H -0.01 -0.32 7.55 -51.93 -0.39 -0.71 16 34 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 35 H 0.10 1.90 6.59 -51.93 -0.34 1.55 16 36 H 0.03 0.47 8.06 -51.93 -0.42 0.05 16 37 H 0.10 0.85 6.52 -51.93 -0.34 0.51 16 38 H 0.12 1.25 7.73 -51.93 -0.40 0.85 16 LS Contribution 332.05 15.07 5.00 5.00 Total: -1.00 -30.26 332.05 -8.92 -39.18 By element: Atomic # 1 Polarization: 3.75 SS G_CDS: -4.71 Total: -0.96 kcal Atomic # 6 Polarization: -11.30 SS G_CDS: -3.08 Total: -14.38 kcal Atomic # 7 Polarization: -42.47 SS G_CDS: 0.70 Total: -41.77 kcal Atomic # 14 Polarization: 20.48 SS G_CDS: -4.67 Total: 15.82 kcal Atomic # 35 Polarization: -0.73 SS G_CDS: -2.17 Total: -2.90 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -30.26 -8.92 -39.18 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000090590582.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.361 kcal (2) G-P(sol) polarization free energy of solvation -30.260 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.101 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.922 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.182 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.179 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds