Wall clock time and date at job start Tue Mar 31 2020 05:36:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.36241 * 120.85564 * 2 1 4 4 C 1.40251 * 119.87483 * 180.02562 * 3 2 1 5 5 S 1.76203 * 119.23308 * 180.02562 * 4 3 2 6 6 C 1.76202 * 99.99777 * 179.97438 * 5 4 3 7 7 H 1.08000 * 119.99868 * 0.02562 * 6 5 4 8 8 C 1.38802 * 120.00100 * 179.97438 * 6 5 4 9 9 N 1.31560 * 119.99757 * 0.02562 * 8 6 5 10 10 Si 1.86803 * 120.00200 * 180.02562 * 8 6 5 11 11 H 1.48498 * 109.47194 * 60.00048 * 10 8 6 12 12 H 1.48494 * 109.46918 * 180.02562 * 10 8 6 13 13 H 1.48501 * 109.46607 * 299.99804 * 10 8 6 14 14 N 1.31880 * 121.53103 * 0.02562 * 4 3 2 15 15 C 1.33683 * 121.24368 * 359.96831 * 14 4 3 16 16 C 1.40599 * 120.97266 * 180.02562 * 15 14 4 17 17 C 1.50705 * 120.12055 * 359.97438 * 16 15 14 18 18 C 1.36115 * 119.76642 * 180.02562 * 16 15 14 19 19 C 1.39387 * 121.02801 * 359.97438 * 18 16 15 20 20 Br 1.89096 * 119.57906 * 180.02562 * 19 18 16 21 21 C 1.36319 * 120.83889 * 0.02562 * 19 18 16 22 22 C 1.40294 * 119.64190 * 359.96131 * 21 19 18 23 23 H 1.08995 * 109.47230 * 269.97944 * 1 2 3 24 24 H 1.09001 * 109.46854 * 29.98214 * 1 2 3 25 25 H 1.08996 * 109.47200 * 149.97461 * 1 2 3 26 26 H 1.08007 * 120.06227 * 0.03932 * 3 2 1 27 27 H 0.96996 * 119.99409 * 179.97438 * 9 8 6 28 28 H 1.08995 * 109.46743 * 270.02267 * 17 16 15 29 29 H 1.08998 * 109.46590 * 30.01808 * 17 16 15 30 30 H 1.08993 * 109.47290 * 150.02008 * 17 16 15 31 31 H 1.08000 * 119.49037 * 179.71927 * 18 16 15 32 32 H 1.07996 * 120.17721 * 179.97438 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2057 1.1696 0.0000 4 6 3.6080 1.1456 -0.0005 5 16 4.4947 2.6682 0.0002 6 6 6.1482 2.0593 -0.0001 7 1 6.3317 0.9950 -0.0010 8 6 7.2149 2.9475 -0.0002 9 7 6.9913 4.2440 0.0004 10 14 8.9678 2.3020 -0.0012 11 1 9.1899 1.4745 -1.2141 12 1 9.9160 3.4448 -0.0006 13 1 9.1909 1.4737 1.2109 14 7 4.2784 0.0098 -0.0016 15 6 3.6465 -1.1682 -0.0015 16 6 4.3669 -2.3757 -0.0020 17 6 5.8738 -2.3572 -0.0033 18 6 3.6985 -3.5614 -0.0025 19 6 2.3051 -3.6007 -0.0019 20 35 1.4185 -5.2709 -0.0018 21 6 1.5736 -2.4504 -0.0013 22 6 2.2302 -1.2106 -0.0006 23 1 -0.3633 -0.0004 1.0276 24 1 -0.3633 0.8902 -0.5136 25 1 -0.3633 -0.8897 -0.5142 26 1 1.6808 2.1135 0.0006 27 1 7.7367 4.8646 0.0006 28 1 6.2362 -2.3524 -1.0313 29 1 6.2266 -1.4630 0.5105 30 1 6.2485 -3.2428 0.5099 31 1 4.2563 -4.4862 -0.0075 32 1 0.4945 -2.4933 -0.0013 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000095095267.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:36:22 Heat of formation + Delta-G solvation = 33.106114 kcal Electronic energy + Delta-G solvation = -17993.928649 eV Core-core repulsion = 15090.841340 eV Total energy + Delta-G solvation = -2903.087309 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 336.983 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.40255 -36.86351 -34.61677 -32.79127 -32.09332 -30.88992 -29.19058 -27.40679 -26.71781 -25.68815 -23.17723 -22.89550 -19.93165 -18.48504 -17.21115 -16.85548 -16.20689 -15.02608 -14.76838 -14.44800 -14.17069 -13.67089 -13.30965 -13.25223 -13.01151 -12.58760 -12.41961 -12.16399 -12.06285 -11.84758 -11.47549 -11.21655 -11.19676 -11.13838 -10.85061 -10.34262 -10.22200 -10.15800 -9.64574 -9.39022 -8.98392 -8.64813 -8.57962 -7.87422 -6.81309 -6.57806 -4.25338 0.68374 1.17372 1.76882 2.35097 2.92246 3.06000 3.16357 3.16807 3.22822 3.92163 4.46625 4.71610 4.79413 4.89504 4.94245 5.10790 5.25533 5.38304 5.42237 5.46581 5.62246 5.65001 5.79478 5.92805 6.03481 6.07015 6.12428 6.24034 6.32451 6.50156 6.59505 6.75788 6.88378 7.20222 7.48838 8.33609 8.59572 8.94917 10.49561 Molecular weight = 336.98amu Principal moments of inertia in cm(-1) A = 0.019680 B = 0.003582 C = 0.003037 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1422.423743 B = 7815.225436 C = 9217.203102 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.025 4.025 3 C -0.159 4.159 4 C 0.127 3.873 5 S 0.129 5.871 6 C -0.532 4.532 7 H 0.112 0.888 8 C 0.074 3.926 9 N -0.870 5.870 10 Si 0.929 3.071 11 H -0.269 1.269 12 H -0.282 1.282 13 H -0.269 1.269 14 N -0.491 5.491 15 C 0.178 3.822 16 C -0.063 4.063 17 C -0.105 4.105 18 C -0.087 4.087 19 C -0.115 4.115 20 Br -0.072 7.072 21 C -0.052 4.052 22 C -0.136 4.136 23 H 0.075 0.925 24 H 0.072 0.928 25 H 0.069 0.931 26 H 0.133 0.867 27 H 0.276 0.724 28 H 0.069 0.931 29 H 0.084 0.916 30 H 0.059 0.941 31 H 0.127 0.873 32 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.197 -13.860 0.026 17.818 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.035 4.035 3 C -0.184 4.184 4 C -0.132 4.132 5 S 0.383 5.617 6 C -0.680 4.680 7 H 0.130 0.870 8 C -0.136 4.136 9 N -0.504 5.504 10 Si 0.755 3.245 11 H -0.194 1.194 12 H -0.207 1.207 13 H -0.194 1.194 14 N -0.209 5.209 15 C 0.047 3.953 16 C -0.067 4.067 17 C -0.162 4.162 18 C -0.109 4.109 19 C -0.196 4.196 20 Br 0.013 6.987 21 C -0.073 4.073 22 C -0.144 4.144 23 H 0.093 0.907 24 H 0.091 0.909 25 H 0.088 0.912 26 H 0.150 0.850 27 H 0.086 0.914 28 H 0.087 0.913 29 H 0.102 0.898 30 H 0.077 0.923 31 H 0.145 0.855 32 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -10.726 -12.838 0.025 16.729 hybrid contribution 0.700 -1.209 -0.015 1.397 sum -10.026 -14.046 0.010 17.257 Atomic orbital electron populations 1.20803 0.90569 1.03035 1.02645 1.19831 0.95780 0.91918 0.95924 1.21377 0.93809 0.98435 1.04796 1.24460 0.93691 1.00235 0.94767 1.83504 1.02198 0.97776 1.78235 1.23483 0.89370 0.98077 1.57065 0.87035 1.25203 1.00634 0.94483 0.93291 1.69934 1.33504 1.01508 1.45411 0.86020 0.80500 0.78500 0.79523 1.19351 1.20744 1.19356 1.68679 1.36761 0.95937 1.19504 1.18895 0.89179 0.92775 0.94415 1.19452 0.96560 0.90349 1.00377 1.20654 0.89985 1.03039 1.02490 1.20450 0.91787 0.97936 1.00690 1.21092 0.94673 0.90418 1.13457 1.96601 1.78278 1.25800 1.98070 1.20775 0.99307 0.90225 0.96982 1.18368 0.94067 0.93063 1.08915 0.90658 0.90930 0.91236 0.84952 0.91433 0.91269 0.89750 0.92254 0.85460 0.85275 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.27 9.59 36.00 0.35 -0.93 16 2 C -0.02 -0.39 5.92 -104.29 -0.62 -1.01 16 3 C -0.16 -2.85 9.43 -39.54 -0.37 -3.22 16 4 C 0.13 2.77 6.97 -16.78 -0.12 2.65 16 5 S 0.13 3.12 21.62 -107.50 -2.32 0.79 16 6 C -0.53 -14.21 9.24 30.94 0.29 -13.93 16 7 H 0.11 3.00 6.51 -52.49 -0.34 2.66 16 8 C 0.07 1.94 5.49 -17.46 -0.10 1.84 16 9 N -0.87 -23.69 13.22 55.49 0.73 -22.96 16 10 Si 0.93 20.45 29.55 -169.99 -5.02 15.43 16 11 H -0.27 -5.84 7.11 56.52 0.40 -5.44 16 12 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 13 H -0.27 -5.83 7.11 56.52 0.40 -5.43 16 14 N -0.49 -10.95 7.44 -9.78 -0.07 -11.03 16 15 C 0.18 3.49 6.59 -84.85 -0.56 2.93 16 16 C -0.06 -1.10 5.89 -104.49 -0.62 -1.71 16 17 C -0.10 -1.69 9.79 36.01 0.35 -1.34 16 18 C -0.09 -1.30 9.31 -39.92 -0.37 -1.67 16 19 C -0.11 -1.65 6.18 -39.85 -0.25 -1.89 16 20 Br -0.07 -0.87 33.66 -68.01 -2.29 -3.16 16 21 C -0.05 -0.76 9.01 -39.50 -0.36 -1.11 16 22 C -0.14 -2.34 5.75 -106.75 -0.61 -2.96 16 23 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 24 H 0.07 0.71 8.10 -51.93 -0.42 0.29 16 25 H 0.07 0.69 6.51 -51.93 -0.34 0.35 16 26 H 0.13 2.04 8.06 -52.48 -0.42 1.62 16 27 H 0.28 7.02 8.31 -40.82 -0.34 6.68 16 28 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 29 H 0.08 1.56 7.55 -51.93 -0.39 1.17 16 30 H 0.06 0.78 8.08 -51.93 -0.42 0.36 16 31 H 0.13 1.61 8.06 -52.49 -0.42 1.19 16 32 H 0.13 1.57 6.43 -52.49 -0.34 1.23 16 LS Contribution 309.86 15.07 4.67 4.67 Total: -1.00 -28.22 309.86 -10.36 -38.58 By element: Atomic # 1 Polarization: 3.10 SS G_CDS: -3.08 Total: 0.02 kcal Atomic # 6 Polarization: -19.37 SS G_CDS: -2.98 Total: -22.35 kcal Atomic # 7 Polarization: -34.64 SS G_CDS: 0.66 Total: -33.98 kcal Atomic # 14 Polarization: 20.45 SS G_CDS: -5.02 Total: 15.43 kcal Atomic # 16 Polarization: 3.12 SS G_CDS: -2.32 Total: 0.79 kcal Atomic # 35 Polarization: -0.87 SS G_CDS: -2.29 Total: -3.16 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -28.22 -10.36 -38.58 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000095095267.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.686 kcal (2) G-P(sol) polarization free energy of solvation -28.217 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.469 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.363 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.580 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.106 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds