Wall clock time and date at job start Tue Mar 31 2020 05:36:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38790 * 119.06188 * 2 1 4 4 C 1.38826 * 119.66187 * 180.25613 * 3 2 1 5 5 S 1.76200 * 121.07504 * 179.76786 * 4 3 2 6 6 C 1.76197 * 99.99946 * 9.16948 * 5 4 3 7 7 H 1.08005 * 119.99947 * 5.34542 * 6 5 4 8 8 C 1.38805 * 120.00234 * 185.06714 * 6 5 4 9 9 N 1.31541 * 120.00132 * 0.27465 * 8 6 5 10 10 Si 1.86807 * 120.00328 * 180.27942 * 8 6 5 11 11 H 1.48499 * 109.46832 * 359.97438 * 10 8 6 12 12 H 1.48492 * 109.47240 * 119.99911 * 10 8 6 13 13 H 1.48507 * 109.46881 * 239.99887 * 10 8 6 14 14 C 1.41694 * 117.85508 * 359.49352 * 4 3 2 15 15 C 1.40064 * 121.35003 * 180.30052 * 14 4 3 16 16 C 1.36402 * 119.62882 * 179.97438 * 15 14 4 17 17 Br 1.89102 * 119.60477 * 179.97438 * 16 15 14 18 18 C 1.39321 * 120.78870 * 359.97438 * 16 15 14 19 19 C 1.36145 * 121.01274 * 359.97438 * 18 16 15 20 20 C 1.50702 * 120.11676 * 179.97438 * 19 18 16 21 21 C 1.40566 * 119.76961 * 359.97438 * 19 18 16 22 22 N 1.31298 * 119.05970 * 179.76114 * 2 1 3 23 23 H 1.08994 * 109.47157 * 270.23803 * 1 2 3 24 24 H 1.08993 * 109.46668 * 30.23893 * 1 2 3 25 25 H 1.09001 * 109.46945 * 150.23719 * 1 2 3 26 26 H 1.07999 * 120.16976 * 0.02562 * 3 2 1 27 27 H 0.96999 * 120.00643 * 180.02562 * 9 8 6 28 28 H 1.08000 * 120.18811 * 0.02562 * 15 14 4 29 29 H 1.07999 * 119.49522 * 179.97438 * 18 16 15 30 30 H 1.09009 * 109.47271 * 90.00183 * 20 19 18 31 31 H 1.09004 * 109.47225 * 210.00076 * 20 19 18 32 32 H 1.08997 * 109.47116 * 330.00596 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1812 1.2132 0.0000 4 6 3.5693 1.2277 -0.0054 5 16 4.4629 2.7463 -0.0117 6 6 3.1428 3.8793 0.2678 7 1 2.1479 3.5102 0.4689 8 6 3.3826 5.2461 0.2353 9 7 4.5943 5.6956 -0.0096 10 14 1.9845 6.4472 0.5393 11 1 0.7297 5.6933 0.7887 12 1 2.3016 7.2867 1.7224 13 1 1.8108 7.3164 -0.6522 14 6 4.2445 -0.0180 0.0003 15 6 5.6434 -0.0887 0.0017 16 6 6.2570 -1.3069 0.0078 17 35 8.1456 -1.4016 0.0090 18 6 5.5089 -2.4822 0.0132 19 6 4.1479 -2.4475 0.0131 20 6 3.3587 -3.7313 0.0184 21 6 3.4814 -1.2099 0.0080 22 7 2.1447 -1.1477 0.0048 23 1 -0.3633 0.0043 1.0276 24 1 -0.3632 0.8878 -0.5175 25 1 -0.3633 -0.8921 -0.5102 26 1 1.6287 2.1411 0.0004 27 1 4.7620 6.6508 -0.0319 28 1 6.2328 0.8162 -0.0011 29 1 6.0164 -3.4355 0.0176 30 1 3.1684 -4.0366 1.0474 31 1 2.4102 -3.5769 -0.4961 32 1 3.9266 -4.5090 -0.4922 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000095095272.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:36:24 Heat of formation + Delta-G solvation = 34.410090 kcal Electronic energy + Delta-G solvation = -17932.080056 eV Core-core repulsion = 15029.049292 eV Total energy + Delta-G solvation = -2903.030764 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 336.983 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.28836 -37.08358 -33.76907 -33.04363 -32.19127 -30.85155 -29.79150 -27.64720 -26.12222 -26.00496 -23.43104 -22.00106 -20.77225 -18.24521 -17.70078 -16.32031 -16.07000 -15.29080 -14.69075 -14.45755 -14.24360 -13.59293 -13.41674 -13.28920 -12.76358 -12.65806 -12.46147 -12.02961 -11.91938 -11.69790 -11.49210 -11.40168 -11.27109 -11.22341 -10.85557 -10.43482 -10.31340 -10.07435 -9.97919 -9.44143 -9.12073 -8.71174 -8.25259 -7.98956 -6.85334 -6.76704 -4.49528 0.72391 1.22911 1.87085 2.35380 2.80442 2.97494 3.05935 3.13151 3.15992 3.77313 4.46155 4.62256 4.68831 4.74139 4.98714 5.06922 5.39479 5.44600 5.53954 5.58042 5.75708 5.85547 5.87843 5.90711 6.00059 6.11801 6.24210 6.31647 6.38142 6.51194 6.64796 6.79753 6.89239 7.19402 7.33142 7.90559 8.54815 8.70951 10.28932 Molecular weight = 336.98amu Principal moments of inertia in cm(-1) A = 0.012505 B = 0.004577 C = 0.003365 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2238.559829 B = 6116.734243 C = 8319.212426 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C 0.185 3.815 3 C -0.221 4.221 4 C -0.042 4.042 5 S 0.122 5.878 6 C -0.561 4.561 7 H 0.100 0.900 8 C 0.081 3.919 9 N -0.855 5.855 10 Si 0.929 3.071 11 H -0.264 1.264 12 H -0.274 1.274 13 H -0.274 1.274 14 C -0.105 4.105 15 C -0.043 4.043 16 C -0.111 4.111 17 Br -0.066 7.066 18 C -0.084 4.084 19 C -0.073 4.073 20 C -0.098 4.098 21 C 0.170 3.830 22 N -0.527 5.527 23 H 0.075 0.925 24 H 0.073 0.927 25 H 0.072 0.928 26 H 0.145 0.855 27 H 0.279 0.721 28 H 0.139 0.861 29 H 0.129 0.871 30 H 0.066 0.934 31 H 0.077 0.923 32 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.174 -12.616 -0.070 12.670 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.036 3.964 3 C -0.255 4.255 4 C -0.167 4.167 5 S 0.381 5.619 6 C -0.708 4.708 7 H 0.117 0.883 8 C -0.131 4.131 9 N -0.486 5.486 10 Si 0.754 3.246 11 H -0.188 1.188 12 H -0.200 1.200 13 H -0.200 1.200 14 C -0.114 4.114 15 C -0.065 4.065 16 C -0.191 4.191 17 Br 0.019 6.981 18 C -0.106 4.106 19 C -0.076 4.076 20 C -0.155 4.155 21 C 0.045 3.955 22 N -0.242 5.242 23 H 0.093 0.907 24 H 0.092 0.908 25 H 0.091 0.909 26 H 0.163 0.837 27 H 0.089 0.911 28 H 0.156 0.844 29 H 0.147 0.853 30 H 0.085 0.915 31 H 0.096 0.904 32 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 2.917 -12.749 -0.241 13.081 hybrid contribution -1.899 1.481 0.324 2.430 sum 1.018 -11.268 0.082 11.314 Atomic orbital electron populations 1.20716 0.89592 1.02965 1.02692 1.21177 0.96282 0.88329 0.90645 1.21915 0.93703 0.99383 1.10469 1.23414 0.97777 0.99422 0.96093 1.83404 1.12256 0.90047 1.76165 1.23575 0.97843 0.92741 1.56602 0.88266 1.25184 0.97184 0.97842 0.92864 1.69938 1.20169 1.16021 1.42495 0.85920 0.80544 0.79629 0.78522 1.18830 1.19964 1.19952 1.18294 0.93287 0.93011 1.06766 1.20924 0.93500 0.96861 0.95233 1.21140 0.89471 0.95872 1.12651 1.96618 1.04348 1.99083 1.98002 1.20455 0.92950 0.96763 1.00402 1.19358 0.92622 0.94023 1.01603 1.20573 1.00133 0.92637 1.02110 1.18551 0.89588 0.91572 0.95765 1.67798 1.07660 1.28197 1.20560 0.90658 0.90833 0.90893 0.83725 0.91109 0.84372 0.85316 0.91542 0.90419 0.92216 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.40 10.14 36.00 0.36 -1.04 16 2 C 0.18 3.37 6.77 -82.62 -0.56 2.81 16 3 C -0.22 -4.51 8.87 -39.16 -0.35 -4.86 16 4 C -0.04 -0.92 6.18 -38.05 -0.23 -1.15 16 5 S 0.12 2.88 20.21 -107.50 -2.17 0.71 16 6 C -0.56 -14.08 9.00 30.94 0.28 -13.80 16 7 H 0.10 2.39 5.12 -52.48 -0.27 2.12 16 8 C 0.08 2.03 5.49 -17.47 -0.10 1.94 16 9 N -0.85 -22.43 13.22 55.49 0.73 -21.70 16 10 Si 0.93 19.08 29.55 -169.99 -5.02 14.06 16 11 H -0.26 -5.28 7.11 56.52 0.40 -4.88 16 12 H -0.27 -5.58 7.11 56.52 0.40 -5.17 16 13 H -0.27 -5.56 7.11 56.52 0.40 -5.15 16 14 C -0.10 -2.11 5.75 -106.64 -0.61 -2.73 16 15 C -0.04 -0.80 9.13 -39.56 -0.36 -1.16 16 16 C -0.11 -1.79 6.19 -39.84 -0.25 -2.04 16 17 Br -0.07 -0.92 33.66 -68.01 -2.29 -3.21 16 18 C -0.08 -1.26 9.31 -39.93 -0.37 -1.63 16 19 C -0.07 -1.17 5.89 -104.50 -0.62 -1.79 16 20 C -0.10 -1.25 9.80 36.01 0.35 -0.90 16 21 C 0.17 3.23 6.59 -84.87 -0.56 2.67 16 22 N -0.53 -9.89 9.29 -7.33 -0.07 -9.96 16 23 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 24 H 0.07 0.92 8.07 -51.93 -0.42 0.50 16 25 H 0.07 0.92 8.14 -51.93 -0.42 0.49 16 26 H 0.15 2.95 5.24 -52.49 -0.28 2.68 16 27 H 0.28 6.77 8.31 -40.82 -0.34 6.43 16 28 H 0.14 2.58 6.95 -52.49 -0.36 2.22 16 29 H 0.13 1.57 8.06 -52.49 -0.42 1.14 16 30 H 0.07 0.79 8.14 -51.92 -0.42 0.37 16 31 H 0.08 1.05 7.55 -51.93 -0.39 0.66 16 32 H 0.06 0.62 8.08 -51.93 -0.42 0.20 16 LS Contribution 308.15 15.07 4.64 4.64 Total: -1.00 -26.85 308.15 -10.15 -37.00 By element: Atomic # 1 Polarization: 5.08 SS G_CDS: -2.96 Total: 2.12 kcal Atomic # 6 Polarization: -20.66 SS G_CDS: -3.01 Total: -23.67 kcal Atomic # 7 Polarization: -32.32 SS G_CDS: 0.67 Total: -31.66 kcal Atomic # 14 Polarization: 19.08 SS G_CDS: -5.02 Total: 14.06 kcal Atomic # 16 Polarization: 2.88 SS G_CDS: -2.17 Total: 0.71 kcal Atomic # 35 Polarization: -0.92 SS G_CDS: -2.29 Total: -3.21 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -26.85 -10.15 -37.00 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000095095272.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.415 kcal (2) G-P(sol) polarization free energy of solvation -26.854 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.561 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.150 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.005 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.410 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds