Wall clock time and date at job start Tue Mar 31 2020 05:59:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86803 * 120.00385 * 2 1 4 4 H 1.48501 * 109.47127 * 270.00169 * 3 2 1 5 5 H 1.48508 * 109.46757 * 29.99788 * 3 2 1 6 6 H 1.48503 * 109.47374 * 149.99555 * 3 2 1 7 7 C 1.37879 * 119.99959 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00002 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00026 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.47273 * 179.97438 * 9 7 2 11 11 N 1.46895 * 109.47408 * 179.97438 * 10 9 7 12 12 C 1.46901 * 111.00433 * 170.00018 * 11 10 9 13 13 C 1.53235 * 109.34057 * 172.74706 * 12 11 10 14 14 N 1.47083 * 108.52275 * 53.83394 * 13 12 11 15 15 C 1.34771 * 120.88379 * 128.83076 * 14 13 12 16 16 O 1.21594 * 120.00216 * 354.53084 * 15 14 13 17 17 N 1.34774 * 120.00174 * 174.52454 * 15 14 13 18 18 C 1.40003 * 120.00281 * 187.60932 * 17 15 14 19 19 C 1.38855 * 120.05398 * 32.55714 * 18 17 15 20 20 C 1.38118 * 119.93905 * 179.77013 * 19 18 17 21 21 C 1.38383 * 120.05397 * 0.50795 * 20 19 18 22 22 Cl 1.73608 * 119.94010 * 179.72035 * 21 20 19 23 23 C 1.38381 * 120.11584 * 359.74763 * 21 20 19 24 24 C 1.38109 * 120.05699 * 359.97438 * 23 21 20 25 25 C 1.47085 * 118.23496 * 308.81442 * 14 13 12 26 26 C 1.46905 * 110.99817 * 45.69898 * 11 10 9 27 27 H 0.96995 * 119.99776 * 0.02562 * 1 2 3 28 28 H 1.08997 * 109.47036 * 59.99704 * 9 7 2 29 29 H 1.09005 * 109.47165 * 299.99789 * 9 7 2 30 30 H 1.09005 * 109.46897 * 60.00281 * 10 9 7 31 31 H 1.08997 * 109.47106 * 300.00369 * 10 9 7 32 32 H 1.09000 * 109.49210 * 52.78944 * 12 11 10 33 33 H 1.08998 * 109.48984 * 292.70807 * 12 11 10 34 34 H 1.09004 * 109.62823 * 173.53778 * 13 12 11 35 35 H 1.09002 * 109.63421 * 293.92563 * 13 12 11 36 36 H 0.97006 * 120.00067 * 7.60218 * 17 15 14 37 37 H 1.07993 * 120.02931 * 0.02562 * 19 18 17 38 38 H 1.07998 * 119.97284 * 180.23410 * 20 19 18 39 39 H 1.08003 * 119.97132 * 179.97438 * 23 21 20 40 40 H 1.07998 * 120.02595 * 179.97438 * 24 23 21 41 41 H 1.09002 * 109.62667 * 170.89541 * 25 14 13 42 42 H 1.09001 * 109.62703 * 291.47092 * 25 14 13 43 43 H 1.08999 * 109.49167 * 67.29403 * 26 11 10 44 44 H 1.08999 * 109.51149 * 307.22916 * 26 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5468 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 6 2.2452 -3.6621 0.0005 11 7 1.5108 -4.9343 0.0012 12 6 2.4170 -6.0656 -0.2370 13 6 1.6497 -7.3787 -0.0495 14 7 0.4548 -7.3481 -0.9067 15 6 0.1793 -8.3658 -1.7461 16 8 0.9721 -9.2786 -1.8757 17 7 -0.9749 -8.3720 -2.4417 18 6 -1.3357 -9.4993 -3.1895 19 6 -0.9723 -10.7672 -2.7554 20 6 -1.3335 -11.8780 -3.4924 21 6 -2.0478 -11.7274 -4.6680 22 17 -2.4940 -13.1252 -5.5959 23 6 -2.4065 -10.4645 -5.1056 24 6 -2.0528 -9.3509 -4.3693 25 6 -0.4316 -6.1773 -0.8231 26 6 0.4177 -4.9115 -0.9800 27 1 -0.4849 0.8400 -0.0004 28 1 0.6247 -2.5571 -0.8896 29 1 0.6240 -2.5567 0.8903 30 1 2.8718 -3.6044 0.8906 31 1 2.8719 -3.6043 -0.8894 32 1 3.2448 -6.0238 0.4710 33 1 2.8049 -6.0130 -1.2542 34 1 2.2842 -8.2176 -0.3358 35 1 1.3527 -7.4836 0.9940 36 1 -1.5559 -7.5954 -2.4243 37 1 -0.4113 -10.8849 -1.8401 38 1 -1.0544 -12.8646 -3.1533 39 1 -2.9637 -10.3497 -6.0237 40 1 -2.3327 -8.3656 -4.7114 41 1 -1.1732 -6.2220 -1.6207 42 1 -0.9317 -6.1651 0.1453 43 1 0.8334 -4.8750 -1.9869 44 1 -0.2047 -4.0327 -0.8114 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000095353011.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:59:05 Heat of formation + Delta-G solvation = 9.847269 kcal Electronic energy + Delta-G solvation = -26042.450760 eV Core-core repulsion = 22213.988627 eV Total energy + Delta-G solvation = -3828.462133 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 337.130 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.09655 -39.41324 -38.08828 -36.74399 -35.07981 -34.88012 -32.97604 -31.40159 -31.27164 -30.05267 -29.30467 -26.84151 -24.21629 -23.80517 -23.42817 -22.86996 -21.43814 -20.24111 -19.58880 -18.63853 -17.70418 -16.92452 -16.58435 -16.05719 -15.56076 -15.23544 -14.88908 -14.66709 -14.59914 -14.38020 -14.27455 -14.08296 -13.91081 -13.75428 -13.48672 -12.76957 -12.54382 -12.31493 -12.15636 -12.00620 -11.82048 -11.63492 -11.30975 -11.17156 -11.10637 -11.02709 -10.87188 -10.58998 -10.48078 -10.19676 -10.04948 -9.47096 -9.35102 -9.20819 -8.84694 -8.43546 -8.28218 -7.87535 -6.09796 -4.12026 0.80414 0.99214 1.86853 2.30422 2.82866 3.26147 3.32968 3.36111 3.41895 3.51307 4.21293 4.41973 4.46268 4.56643 4.85644 4.93161 4.98338 5.03958 5.12507 5.14620 5.26905 5.30561 5.42163 5.45858 5.60064 5.65902 5.73483 5.87461 5.91550 5.95354 6.03302 6.08936 6.11104 6.22579 6.29523 6.42169 6.59364 6.66352 6.79062 7.29953 7.41813 7.56703 7.61677 7.72966 7.92484 8.24526 8.32190 8.94035 9.52374 11.01527 Molecular weight = 337.13amu Principal moments of inertia in cm(-1) A = 0.025633 B = 0.001878 C = 0.001785 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1092.089600 B =14902.948931 C =15679.609425 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.059 3.941 3 Si 0.893 3.107 4 H -0.281 1.281 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.523 4.523 8 H 0.055 0.945 9 C 0.021 3.979 10 C 0.062 3.938 11 N -0.538 5.538 12 C 0.039 3.961 13 C 0.134 3.866 14 N -0.620 5.620 15 C 0.708 3.292 16 O -0.577 6.577 17 N -0.689 5.689 18 C 0.180 3.820 19 C -0.111 4.111 20 C -0.088 4.088 21 C -0.057 4.057 22 Cl -0.077 7.077 23 C -0.088 4.088 24 C -0.140 4.140 25 C 0.113 3.887 26 C 0.035 3.965 27 H 0.261 0.739 28 H 0.019 0.981 29 H 0.026 0.974 30 H 0.066 0.934 31 H 0.021 0.979 32 H 0.085 0.915 33 H 0.033 0.967 34 H 0.093 0.907 35 H 0.076 0.924 36 H 0.409 0.591 37 H 0.145 0.855 38 H 0.135 0.865 39 H 0.136 0.864 40 H 0.135 0.865 41 H 0.073 0.927 42 H 0.083 0.917 43 H 0.033 0.967 44 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.137 -22.098 -6.851 23.936 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.143 4.143 3 Si 0.721 3.279 4 H -0.207 1.207 5 H -0.211 1.211 6 H -0.198 1.198 7 C -0.562 4.562 8 H 0.073 0.927 9 C -0.016 4.016 10 C -0.065 4.065 11 N -0.263 5.263 12 C -0.090 4.090 13 C 0.012 3.988 14 N -0.357 5.357 15 C 0.410 3.590 16 O -0.454 6.454 17 N -0.338 5.338 18 C 0.084 3.916 19 C -0.131 4.131 20 C -0.108 4.108 21 C -0.085 4.085 22 Cl -0.048 7.048 23 C -0.107 4.107 24 C -0.161 4.161 25 C -0.010 4.010 26 C -0.094 4.094 27 H 0.071 0.929 28 H 0.038 0.962 29 H 0.045 0.955 30 H 0.084 0.916 31 H 0.039 0.961 32 H 0.104 0.896 33 H 0.052 0.948 34 H 0.112 0.888 35 H 0.094 0.906 36 H 0.248 0.752 37 H 0.163 0.837 38 H 0.153 0.847 39 H 0.154 0.846 40 H 0.153 0.847 41 H 0.092 0.908 42 H 0.101 0.899 43 H 0.051 0.949 44 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -5.908 -22.756 -6.465 24.383 hybrid contribution 0.489 1.546 -0.942 1.875 sum -5.418 -21.210 -7.407 23.111 Atomic orbital electron populations 1.69945 1.06018 1.26730 1.50574 1.24984 0.94865 0.99253 0.95156 0.86580 0.79883 0.83356 0.78100 1.20702 1.21148 1.19844 1.21161 0.93055 0.90921 1.51028 0.92712 1.19250 0.94097 0.90574 0.97701 1.22350 0.97077 0.87723 0.99303 1.62081 1.11632 1.03946 1.48594 1.22482 0.95519 0.90890 1.00158 1.21677 0.85310 0.98160 0.93686 1.47446 1.27548 1.19125 1.41553 1.15773 0.81387 0.82967 0.78875 1.90927 1.48091 1.37582 1.68805 1.42895 1.22808 1.17795 1.50310 1.17607 0.96708 0.86435 0.90816 1.21149 1.00670 0.89976 1.01335 1.20935 0.97038 0.99598 0.93185 1.20866 1.03868 0.88237 0.95522 1.98363 1.91740 1.41541 1.73171 1.20796 0.99787 0.90026 1.00091 1.20831 1.02676 0.99371 0.93218 1.21928 0.92150 0.84587 1.02324 1.22599 0.94921 0.97835 0.93997 0.92921 0.96248 0.95549 0.91568 0.96058 0.89619 0.94846 0.88829 0.90606 0.75193 0.83740 0.84694 0.84591 0.84669 0.90848 0.89898 0.94910 0.87201 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.65 13.29 55.43 0.74 -24.91 16 2 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 3 Si 0.89 21.00 29.54 -169.99 -5.02 15.98 16 4 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 5 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 6 H -0.27 -6.33 7.11 56.52 0.40 -5.92 16 7 C -0.52 -14.17 9.11 -34.44 -0.31 -14.48 16 8 H 0.05 1.45 7.74 -52.49 -0.41 1.05 16 9 C 0.02 0.50 4.22 -27.88 -0.12 0.39 16 10 C 0.06 1.22 5.21 -3.83 -0.02 1.20 16 11 N -0.54 -8.78 4.78 -234.33 -1.12 -9.90 16 12 C 0.04 0.53 5.58 -3.70 -0.02 0.51 16 13 C 0.13 1.66 6.61 -3.60 -0.02 1.64 16 14 N -0.62 -7.68 3.01 -178.18 -0.54 -8.21 16 15 C 0.71 9.24 8.01 -86.93 -0.70 8.55 16 16 O -0.58 -9.16 13.54 5.28 0.07 -9.09 16 17 N -0.69 -7.09 5.26 -14.22 -0.07 -7.16 16 18 C 0.18 1.88 6.28 -83.67 -0.53 1.35 16 19 C -0.11 -1.20 8.65 -39.40 -0.34 -1.55 16 20 C -0.09 -0.84 9.82 -39.57 -0.39 -1.23 16 21 C -0.06 -0.53 6.32 -39.48 -0.25 -0.78 16 22 Cl -0.08 -0.66 28.95 -51.86 -1.50 -2.16 16 23 C -0.09 -0.73 9.82 -39.58 -0.39 -1.12 16 24 C -0.14 -1.19 9.96 -39.40 -0.39 -1.58 16 25 C 0.11 1.29 6.54 -3.60 -0.02 1.26 16 26 C 0.04 0.53 5.04 -3.70 -0.02 0.51 16 27 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 28 H 0.02 0.48 6.18 -51.93 -0.32 0.16 16 29 H 0.03 0.68 8.14 -51.93 -0.42 0.26 16 30 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 31 H 0.02 0.42 8.08 -51.93 -0.42 0.01 16 32 H 0.09 1.08 8.11 -51.93 -0.42 0.66 16 33 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 34 H 0.09 1.17 7.04 -51.93 -0.37 0.80 16 35 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 36 H 0.41 3.20 6.35 -40.82 -0.26 2.94 16 37 H 0.14 1.74 6.43 -52.49 -0.34 1.40 16 38 H 0.14 1.07 8.06 -52.49 -0.42 0.65 16 39 H 0.14 0.87 8.06 -52.48 -0.42 0.44 16 40 H 0.14 0.86 8.06 -52.49 -0.42 0.44 16 41 H 0.07 0.63 5.73 -51.93 -0.30 0.33 16 42 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 43 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 44 H 0.11 1.85 5.73 -51.93 -0.30 1.56 16 LS Contribution 369.07 15.07 5.56 5.56 Total: -1.00 -31.00 369.07 -11.57 -42.57 By element: Atomic # 1 Polarization: 7.20 SS G_CDS: -6.07 Total: 1.13 kcal Atomic # 6 Polarization: -0.18 SS G_CDS: -3.62 Total: -3.80 kcal Atomic # 7 Polarization: -49.19 SS G_CDS: -0.99 Total: -50.19 kcal Atomic # 8 Polarization: -9.16 SS G_CDS: 0.07 Total: -9.09 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -5.02 Total: 15.98 kcal Atomic # 17 Polarization: -0.66 SS G_CDS: -1.50 Total: -2.16 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -31.00 -11.57 -42.57 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000095353011.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.415 kcal (2) G-P(sol) polarization free energy of solvation -31.000 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.414 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.567 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.567 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.847 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds