Wall clock time and date at job start Tue Mar 31 2020 06:08:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86800 * 120.00005 * 2 1 4 4 H 1.48506 * 109.46838 * 269.99383 * 3 2 1 5 5 H 1.48497 * 109.47419 * 29.99534 * 3 2 1 6 6 H 1.48499 * 109.47011 * 150.00096 * 3 2 1 7 7 C 1.37876 * 119.99563 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99683 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00428 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.47466 * 179.97438 * 9 7 2 11 11 O 1.42898 * 109.47319 * 180.02562 * 10 9 7 12 12 C 1.35900 * 117.00172 * 179.97438 * 11 10 9 13 13 C 1.38746 * 120.05467 * 359.72752 * 12 11 10 14 14 C 1.38129 * 119.94586 * 179.74253 * 13 12 11 15 15 C 1.38288 * 120.05279 * 0.50650 * 14 13 12 16 16 C 1.38250 * 120.10917 * 359.76642 * 15 14 13 17 17 C 1.50699 * 119.96557 * 179.97438 * 16 15 14 18 18 N 1.46497 * 109.47121 * 269.97217 * 17 16 15 19 19 C 1.39949 * 120.00059 * 180.02562 * 18 17 16 20 20 C 1.39558 * 119.83601 * 359.73236 * 19 18 17 21 21 C 1.36485 * 120.74906 * 179.71220 * 20 19 18 22 22 C 1.39282 * 120.09587 * 0.55591 * 21 20 19 23 23 N 1.37256 * 133.66934 * 179.71877 * 22 21 20 24 24 H 0.97003 * 125.47218 * 359.97438 * 23 22 21 25 25 N 1.39860 * 109.05317 * 180.02562 * 23 22 21 26 26 C 1.30252 * 110.08926 * 359.97438 * 25 23 22 27 27 C 1.40760 * 119.63792 * 359.72832 * 22 21 20 28 28 C 1.38040 * 119.83772 * 180.02562 * 19 18 17 29 29 C 1.38162 * 120.05723 * 359.97438 * 16 15 14 30 30 H 0.97002 * 119.99731 * 0.02562 * 1 2 3 31 31 H 1.09002 * 109.47120 * 59.99671 * 9 7 2 32 32 H 1.08998 * 109.46862 * 300.00473 * 9 7 2 33 33 H 1.09002 * 109.47153 * 59.99773 * 10 9 7 34 34 H 1.09001 * 109.46832 * 299.99964 * 10 9 7 35 35 H 1.08010 * 120.02919 * 359.97292 * 13 12 11 36 36 H 1.07992 * 119.97408 * 180.25091 * 14 13 12 37 37 H 1.07997 * 119.94352 * 179.74725 * 15 14 13 38 38 H 1.08993 * 109.47352 * 29.97953 * 17 16 15 39 39 H 1.09001 * 109.46764 * 149.97894 * 17 16 15 40 40 H 0.97001 * 120.00247 * 0.02562 * 18 17 16 41 41 H 1.07998 * 119.62195 * 0.02562 * 20 19 18 42 42 H 1.08001 * 119.95078 * 180.28567 * 21 20 19 43 43 H 1.07996 * 126.09758 * 179.97438 * 26 25 23 44 44 H 1.08001 * 120.26848 * 359.97072 * 28 19 18 45 45 H 1.07998 * 120.02891 * 180.02562 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0463 -1.4002 5 1 1.4467 2.6527 0.6999 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 6 2.2451 -3.6621 0.0005 11 8 1.5306 -4.8996 -0.0001 12 6 2.2707 -6.0394 -0.0007 13 6 3.6563 -5.9682 -0.0064 14 6 4.4064 -7.1281 -0.0017 15 6 3.7773 -8.3596 -0.0018 16 6 2.3968 -8.4332 -0.0018 17 6 1.7146 -9.7770 -0.0025 18 7 1.4930 -10.2114 -1.3839 19 6 0.8695 -11.4378 -1.6403 20 6 0.4655 -12.2469 -0.5774 21 6 -0.1494 -13.4438 -0.8059 22 6 -0.3706 -13.8774 -2.1109 23 7 -0.9424 -15.0018 -2.6520 24 1 -1.3172 -15.7409 -2.1478 25 7 -0.8966 -14.9112 -4.0469 26 6 -0.3296 -13.7944 -4.4043 27 6 0.0381 -13.0721 -3.1907 28 6 0.6628 -11.8441 -2.9432 29 6 1.6421 -7.2759 -0.0011 30 1 -0.4850 0.8401 -0.0004 31 1 0.6246 -2.5571 -0.8897 32 1 0.6240 -2.5566 0.8902 33 1 2.8718 -3.6044 0.8905 34 1 2.8718 -3.6044 -0.8895 35 1 4.1481 -5.0066 -0.0109 36 1 5.4849 -7.0732 -0.0020 37 1 4.3655 -9.2654 -0.0022 38 1 2.3439 -10.5042 0.5106 39 1 0.7568 -9.6984 0.5118 40 1 1.7783 -9.6490 -2.1209 41 1 0.6367 -11.9199 0.4376 42 1 -0.4609 -14.0576 0.0263 43 1 -0.1608 -13.4625 -5.4181 44 1 0.9797 -11.2192 -3.7651 45 1 0.5637 -7.3340 -0.0007 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000095431136.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:08:47 Heat of formation + Delta-G solvation = 66.652809 kcal Electronic energy + Delta-G solvation = -26118.651958 eV Core-core repulsion = 22295.085948 eV Total energy + Delta-G solvation = -3823.566010 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 337.153 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.37592 -39.97880 -38.48386 -37.33410 -34.88026 -33.42187 -32.61357 -31.41219 -30.83427 -30.13667 -29.29473 -28.24605 -25.76171 -24.91258 -23.49158 -22.47627 -22.14946 -21.83265 -21.26207 -20.27370 -18.17460 -17.92164 -17.33357 -16.44630 -16.10703 -15.84742 -15.68774 -15.47812 -15.30218 -15.03752 -14.62051 -14.57808 -14.32174 -13.94947 -13.77950 -13.63164 -13.08178 -13.00432 -12.83296 -12.61260 -12.35501 -12.09727 -11.58343 -11.48944 -11.43285 -11.30059 -11.06971 -10.92368 -10.76750 -10.67126 -10.52985 -9.93111 -9.71313 -9.64562 -9.34608 -8.92258 -8.84142 -8.48783 -7.97238 -7.26071 -6.14008 -4.19028 0.67117 1.22595 1.44645 1.54222 2.27086 2.49434 3.24753 3.28668 3.30930 3.33441 3.60346 3.71828 3.91613 4.34151 4.36842 4.43645 4.56255 4.59432 4.85742 4.89120 5.08575 5.11263 5.13310 5.18933 5.22482 5.32706 5.33320 5.52080 5.54843 5.68414 5.71133 5.90736 5.96462 5.97451 6.04602 6.05833 6.21761 6.35297 6.40989 6.46567 6.53998 6.64216 6.83072 7.03878 7.14713 7.34727 7.45022 7.56692 7.58881 7.75600 7.98509 8.19154 8.86465 9.45583 10.97461 Molecular weight = 337.15amu Principal moments of inertia in cm(-1) A = 0.020916 B = 0.001603 C = 0.001541 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1338.390706 B =17458.064808 C =18167.944306 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.061 3.939 3 Si 0.899 3.101 4 H -0.279 1.279 5 H -0.285 1.285 6 H -0.273 1.273 7 C -0.528 4.528 8 H 0.058 0.942 9 C 0.025 3.975 10 C 0.065 3.935 11 O -0.315 6.315 12 C 0.144 3.856 13 C -0.204 4.204 14 C -0.082 4.082 15 C -0.153 4.153 16 C -0.075 4.075 17 C 0.172 3.828 18 N -0.744 5.744 19 C 0.187 3.813 20 C -0.130 4.130 21 C -0.097 4.097 22 C 0.076 3.924 23 N -0.515 5.515 24 H 0.436 0.564 25 N -0.250 5.250 26 C 0.063 3.937 27 C -0.129 4.129 28 C -0.135 4.135 29 C -0.143 4.143 30 H 0.264 0.736 31 H 0.028 0.972 32 H 0.028 0.972 33 H 0.051 0.949 34 H 0.051 0.949 35 H 0.131 0.869 36 H 0.122 0.878 37 H 0.119 0.881 38 H 0.067 0.933 39 H 0.067 0.933 40 H 0.403 0.597 41 H 0.130 0.870 42 H 0.125 0.875 43 H 0.194 0.806 44 H 0.127 0.873 45 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.661 -28.415 -2.389 28.749 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.142 4.142 3 Si 0.727 3.273 4 H -0.205 1.205 5 H -0.210 1.210 6 H -0.198 1.198 7 C -0.566 4.566 8 H 0.076 0.924 9 C -0.012 4.012 10 C -0.009 4.009 11 O -0.228 6.228 12 C 0.097 3.903 13 C -0.223 4.223 14 C -0.100 4.100 15 C -0.171 4.171 16 C -0.076 4.076 17 C 0.048 3.952 18 N -0.375 5.375 19 C 0.084 3.916 20 C -0.154 4.154 21 C -0.120 4.120 22 C -0.039 4.039 23 N -0.232 5.232 24 H 0.280 0.720 25 N -0.064 5.064 26 C -0.135 4.135 27 C -0.138 4.138 28 C -0.162 4.162 29 C -0.162 4.162 30 H 0.073 0.927 31 H 0.046 0.954 32 H 0.046 0.954 33 H 0.069 0.931 34 H 0.069 0.931 35 H 0.149 0.851 36 H 0.140 0.860 37 H 0.137 0.863 38 H 0.085 0.915 39 H 0.086 0.914 40 H 0.238 0.762 41 H 0.148 0.852 42 H 0.143 0.857 43 H 0.211 0.789 44 H 0.145 0.855 45 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 2.748 -29.298 -2.565 29.538 hybrid contribution 0.970 1.688 0.313 1.972 sum 3.718 -27.610 -2.251 27.950 Atomic orbital electron populations 1.69976 1.06106 1.27018 1.49557 1.24991 0.94911 0.99403 0.94852 0.86480 0.79729 0.82898 0.78239 1.20478 1.21020 1.19761 1.20962 0.93044 0.90200 1.52432 0.92359 1.19127 0.94172 0.88995 0.98914 1.23355 0.97121 0.80753 0.99681 1.86188 1.36536 1.13204 1.86828 1.19189 0.90112 0.87619 0.93381 1.21468 0.93247 1.00000 1.07560 1.20908 0.99579 0.91847 0.97662 1.20828 0.93617 0.97613 1.05091 1.19451 0.93499 0.93491 1.01113 1.20129 0.99258 0.91954 0.83855 1.44673 1.66649 1.19208 1.07018 1.17496 0.94529 0.86798 0.92759 1.20334 1.02084 0.94518 0.98450 1.19558 1.02322 0.97174 0.92930 1.18657 1.00844 0.89724 0.94658 1.45817 1.55635 1.18807 1.02972 0.71969 1.76477 1.18311 1.20124 0.91462 1.25035 0.98284 0.91389 0.98807 1.19582 1.05591 0.96610 0.91968 1.19849 1.05201 0.96166 0.94955 1.20331 1.00342 0.89300 1.06212 0.92670 0.95383 0.95358 0.93062 0.93084 0.85077 0.85978 0.86267 0.91506 0.91441 0.76225 0.85186 0.85713 0.78901 0.85538 0.85267 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.14 13.29 55.43 0.74 -25.40 16 2 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 3 Si 0.90 20.98 29.54 -169.99 -5.02 15.96 16 4 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 5 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 6 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 7 C -0.53 -14.50 9.11 -34.44 -0.31 -14.81 16 8 H 0.06 1.52 7.74 -52.49 -0.41 1.11 16 9 C 0.03 0.64 5.34 -27.89 -0.15 0.50 16 10 C 0.06 1.34 4.68 37.16 0.17 1.52 16 11 O -0.31 -6.21 10.14 -19.43 -0.20 -6.40 16 12 C 0.14 2.34 6.69 -39.22 -0.26 2.07 16 13 C -0.20 -2.93 9.04 -39.43 -0.36 -3.29 16 14 C -0.08 -0.95 10.04 -39.60 -0.40 -1.35 16 15 C -0.15 -1.61 9.70 -39.56 -0.38 -1.99 16 16 C -0.08 -0.81 5.25 -104.65 -0.55 -1.36 16 17 C 0.17 1.46 5.03 -5.20 -0.03 1.43 16 18 N -0.74 -6.41 5.73 -59.79 -0.34 -6.76 16 19 C 0.19 1.69 6.65 -83.73 -0.56 1.13 16 20 C -0.13 -1.06 9.23 -39.72 -0.37 -1.43 16 21 C -0.10 -0.77 10.01 -39.83 -0.40 -1.17 16 22 C 0.08 0.71 7.33 -84.10 -0.62 0.09 16 23 N -0.51 -4.45 7.38 32.39 0.24 -4.22 16 24 H 0.44 2.49 8.96 -182.78 -1.64 0.85 16 25 N -0.25 -2.48 12.55 31.87 0.40 -2.08 16 26 C 0.06 0.55 12.28 -15.14 -0.19 0.36 16 27 C -0.13 -1.25 6.36 -105.21 -0.67 -1.92 16 28 C -0.14 -1.23 9.95 -39.00 -0.39 -1.61 16 29 C -0.14 -1.94 9.64 -39.43 -0.38 -2.32 16 30 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 31 H 0.03 0.77 8.14 -51.93 -0.42 0.34 16 32 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 33 H 0.05 1.01 7.68 -51.93 -0.40 0.61 16 34 H 0.05 1.00 7.65 -51.93 -0.40 0.61 16 35 H 0.13 1.87 6.30 -52.48 -0.33 1.54 16 36 H 0.12 1.14 8.06 -52.49 -0.42 0.72 16 37 H 0.12 1.01 8.06 -52.49 -0.42 0.58 16 38 H 0.07 0.49 7.87 -51.93 -0.41 0.08 16 39 H 0.07 0.56 7.89 -51.93 -0.41 0.15 16 40 H 0.40 3.43 8.47 -40.82 -0.35 3.09 16 41 H 0.13 0.85 6.69 -52.49 -0.35 0.50 16 42 H 0.12 0.68 8.06 -52.49 -0.42 0.26 16 43 H 0.19 1.01 8.06 -52.49 -0.42 0.59 16 44 H 0.13 0.95 8.06 -52.49 -0.42 0.53 16 45 H 0.13 1.71 8.06 -52.49 -0.42 1.28 16 LS Contribution 383.90 15.07 5.79 5.79 Total: -1.00 -31.98 383.90 -11.53 -43.51 By element: Atomic # 1 Polarization: 9.36 SS G_CDS: -7.20 Total: 2.15 kcal Atomic # 6 Polarization: -16.62 SS G_CDS: -5.92 Total: -22.55 kcal Atomic # 7 Polarization: -39.49 SS G_CDS: 1.03 Total: -38.46 kcal Atomic # 8 Polarization: -6.21 SS G_CDS: -0.20 Total: -6.40 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -5.02 Total: 15.96 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -31.98 -11.53 -43.51 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000095431136.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.159 kcal (2) G-P(sol) polarization free energy of solvation -31.980 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.179 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.526 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.506 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.653 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds