Wall clock time and date at job start Tue Mar 31 2020 05:05:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.36875 * 119.69195 * 2 1 4 4 C 1.35044 * 119.68000 * 180.02562 * 3 2 1 5 5 I 2.09495 * 120.45053 * 179.97438 * 4 3 2 6 6 C 1.41619 * 119.10334 * 359.94784 * 4 3 2 7 7 O 1.21781 * 120.30784 * 180.29943 * 6 4 3 8 8 N 1.34844 * 119.38384 * 0.02872 * 6 4 3 9 9 C 1.46501 * 119.86305 * 179.97438 * 8 6 4 10 10 C 1.50700 * 109.47192 * 89.99827 * 9 8 6 11 11 H 1.07996 * 120.00129 * 359.97438 * 10 9 8 12 12 C 1.37870 * 119.99869 * 180.02562 * 10 9 8 13 13 N 1.31518 * 120.00463 * 359.97438 * 12 10 9 14 14 Si 1.86807 * 119.99914 * 180.02562 * 12 10 9 15 15 H 1.48497 * 109.47343 * 59.99694 * 14 12 10 16 16 H 1.48495 * 109.46915 * 180.02562 * 14 12 10 17 17 H 1.48506 * 109.46634 * 299.99678 * 14 12 10 18 18 C 1.34543 * 119.68792 * 179.97438 * 2 1 3 19 19 O 1.21592 * 119.52739 * 0.02562 * 18 2 1 20 20 H 1.09004 * 109.47547 * 270.02847 * 1 2 3 21 21 H 1.09006 * 109.47209 * 30.02619 * 1 2 3 22 22 H 1.09003 * 109.47142 * 150.02296 * 1 2 3 23 23 H 1.08003 * 120.16140 * 359.97365 * 3 2 1 24 24 H 1.08998 * 109.46917 * 209.99965 * 9 8 6 25 25 H 1.09011 * 109.47005 * 329.99726 * 9 8 6 26 26 H 0.96996 * 120.00234 * 180.02562 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1430 1.1890 0.0000 4 6 3.4934 1.1888 -0.0005 5 53 4.5555 2.9945 -0.0013 6 6 4.1820 -0.0488 0.0001 7 8 5.3995 -0.0746 0.0051 8 7 3.4769 -1.1982 0.0005 9 6 4.1785 -2.4843 0.0006 10 6 4.4196 -2.9250 1.4214 11 1 4.0842 -2.3085 2.2423 12 6 5.0692 -4.1146 1.6733 13 7 5.4782 -4.8652 0.6737 14 14 5.3674 -4.6613 3.4346 15 1 4.0660 -4.8080 4.1344 16 1 6.0798 -5.9642 3.4345 17 1 6.1943 -3.6456 4.1347 18 6 2.1313 -1.1688 0.0005 19 8 1.5090 -2.2134 0.0005 20 1 -0.3634 0.0005 1.0277 21 1 -0.3634 0.8898 -0.5143 22 1 -0.3633 -0.8902 -0.5135 23 1 1.6006 2.1230 -0.0004 24 1 3.5710 -3.2295 -0.5129 25 1 5.1337 -2.3772 -0.5137 26 1 5.9349 -5.7023 0.8510 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). I: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000095438719.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:05:11 Heat of formation + Delta-G solvation = -12.534898 kcal Electronic energy + Delta-G solvation = -15518.543793 eV Core-core repulsion = 12651.017557 eV Total energy + Delta-G solvation = -2867.526237 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 335.976 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -41.81566 -38.47845 -36.99578 -34.68748 -32.95519 -32.45147 -28.88466 -27.67226 -26.59448 -24.52382 -22.56881 -21.99345 -18.98414 -17.20055 -17.02652 -16.41838 -15.96403 -15.12530 -14.64890 -14.26726 -14.06547 -13.42167 -13.19329 -12.97277 -12.34758 -12.13485 -11.61575 -11.36756 -11.06465 -10.67616 -10.47275 -10.15360 -10.08103 -9.92700 -9.80370 -9.55081 -8.61994 -8.47117 -8.33854 -6.09951 -4.14243 1.03136 1.06514 2.43886 2.47978 3.33472 3.35913 3.38522 3.54491 3.94897 4.27467 4.42726 4.78067 4.98897 5.16800 5.26483 5.42250 5.53106 6.04400 6.33672 6.53216 7.10743 7.25789 7.81930 7.84231 8.06252 8.20482 8.50001 8.84259 9.49030 10.99886 Molecular weight = 335.98amu Principal moments of inertia in cm(-1) A = 0.018769 B = 0.005484 C = 0.004563 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1491.449448 B = 5104.590175 C = 6134.642494 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.080 3.920 2 N -0.539 5.539 3 C 0.210 3.790 4 C -0.288 4.288 5 I 0.013 6.987 6 C 0.551 3.449 7 O -0.490 6.490 8 N -0.529 5.529 9 C 0.243 3.757 10 C -0.528 4.528 11 H 0.057 0.943 12 C 0.067 3.933 13 N -0.891 5.891 14 Si 0.904 3.096 15 H -0.276 1.276 16 H -0.284 1.284 17 H -0.275 1.275 18 C 0.685 3.315 19 O -0.523 6.523 20 H 0.075 0.925 21 H 0.085 0.915 22 H 0.097 0.903 23 H 0.174 0.826 24 H 0.056 0.944 25 H 0.060 0.940 26 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.115 19.929 -3.102 22.133 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 N -0.260 5.260 3 C 0.080 3.920 4 C -0.437 4.437 5 I 0.157 6.843 6 C 0.342 3.658 7 O -0.364 6.364 8 N -0.271 5.271 9 C 0.126 3.874 10 C -0.566 4.566 11 H 0.075 0.925 12 C -0.136 4.136 13 N -0.529 5.529 14 Si 0.731 3.269 15 H -0.201 1.201 16 H -0.209 1.209 17 H -0.200 1.200 18 C 0.388 3.612 19 O -0.395 6.395 20 H 0.094 0.906 21 H 0.104 0.896 22 H 0.115 0.885 23 H 0.191 0.809 24 H 0.074 0.926 25 H 0.078 0.922 26 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -8.040 20.137 -3.154 21.911 hybrid contribution -0.517 -1.336 1.011 1.753 sum -8.556 18.801 -2.143 20.767 Atomic orbital electron populations 1.22061 0.75147 1.05021 1.04004 1.45041 1.09292 1.04580 1.67044 1.22112 0.91957 0.90245 0.87684 1.25293 0.95182 0.97994 1.25231 1.96544 1.75733 1.12994 1.98984 1.16578 0.88287 0.83190 0.77732 1.90890 1.12177 1.86852 1.46436 1.46837 1.04735 1.12021 1.63536 1.19741 0.92814 0.75397 0.99447 1.21103 1.38618 1.05856 0.91063 0.92523 1.24860 0.94984 0.95921 0.97867 1.69911 1.38803 1.13306 1.30919 0.86464 0.78442 0.77886 0.84125 1.20121 1.20943 1.20006 1.16063 0.82788 0.83351 0.79001 1.90999 1.66083 1.29379 1.53013 0.90629 0.89588 0.88458 0.80897 0.92570 0.92243 0.92405 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.71 10.37 59.85 0.62 1.33 15 2 N -0.54 -7.54 3.01 -128.95 -0.39 -7.93 15 3 C 0.21 2.52 10.08 -16.44 -0.17 2.35 15 4 C -0.29 -4.55 6.21 -39.43 -0.25 -4.80 15 5 I 0.01 0.17 39.76 -73.02 -2.90 -2.73 15 6 C 0.55 11.83 7.44 -14.94 -0.11 11.71 15 7 O -0.49 -12.08 16.01 5.12 0.08 -11.99 15 8 N -0.53 -12.21 2.54 -125.31 -0.32 -12.53 15 9 C 0.24 6.68 4.85 -5.19 -0.03 6.66 15 10 C -0.53 -15.56 9.38 -34.44 -0.32 -15.89 15 11 H 0.06 1.67 7.81 -52.49 -0.41 1.26 15 12 C 0.07 1.95 5.46 -17.82 -0.10 1.85 15 13 N -0.89 -26.89 13.29 55.43 0.74 -26.15 15 14 Si 0.90 22.40 29.54 -169.99 -5.02 17.38 15 15 H -0.28 -6.72 7.11 56.52 0.40 -6.32 15 16 H -0.28 -6.85 7.11 56.52 0.40 -6.45 15 17 H -0.27 -6.75 7.11 56.52 0.40 -6.35 15 18 C 0.69 13.86 8.12 -87.30 -0.71 13.15 15 19 O -0.52 -12.06 15.35 5.29 0.08 -11.98 15 20 H 0.08 0.60 8.14 -51.93 -0.42 0.17 15 21 H 0.09 0.41 8.03 -51.93 -0.42 -0.01 15 22 H 0.10 0.99 7.37 -51.93 -0.38 0.60 15 23 H 0.17 1.19 8.06 -52.48 -0.42 0.77 15 24 H 0.06 1.62 7.39 -51.93 -0.38 1.24 15 25 H 0.06 1.74 7.43 -51.92 -0.39 1.35 15 26 H 0.27 7.56 8.31 -40.82 -0.34 7.22 15 LS Contribution 265.28 15.07 4.00 4.00 Total: -1.00 -35.31 265.28 -6.75 -42.06 By element: Atomic # 1 Polarization: -4.54 SS G_CDS: -1.96 Total: -6.50 kcal Atomic # 6 Polarization: 17.44 SS G_CDS: -1.06 Total: 16.38 kcal Atomic # 7 Polarization: -46.65 SS G_CDS: 0.03 Total: -46.62 kcal Atomic # 8 Polarization: -24.13 SS G_CDS: 0.16 Total: -23.97 kcal Atomic # 14 Polarization: 22.40 SS G_CDS: -5.02 Total: 17.38 kcal Atomic # 53 Polarization: 0.17 SS G_CDS: -2.90 Total: -2.73 kcal Total LS contribution 4.00 Total: 4.00 kcal Total: -35.31 -6.75 -42.06 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000095438719.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.523 kcal (2) G-P(sol) polarization free energy of solvation -35.309 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.786 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.749 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.058 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.535 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds