Wall clock time and date at job start Tue Mar 31 2020 05:45:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45207 * 1 3 3 C 1.34227 * 117.00165 * 2 1 4 4 O 1.20826 * 119.99858 * 0.02562 * 3 2 1 5 5 C 1.50703 * 119.99878 * 180.02562 * 3 2 1 6 6 N 1.46495 * 109.47085 * 179.97438 * 5 3 2 7 7 C 1.36715 * 120.00331 * 265.39212 * 6 5 3 8 8 H 1.07999 * 120.00583 * 206.33810 * 7 6 5 9 9 C 1.39118 * 120.00134 * 26.34289 * 7 6 5 10 10 N 1.31329 * 120.00010 * 5.69649 * 9 7 6 11 11 Si 1.86805 * 120.00431 * 185.69341 * 9 7 6 12 12 H 1.48504 * 109.46669 * 89.99873 * 11 9 7 13 13 H 1.48497 * 109.47361 * 209.99860 * 11 9 7 14 14 H 1.48498 * 109.46754 * 330.00261 * 11 9 7 15 15 C 1.34780 * 119.99567 * 85.39346 * 6 5 3 16 16 O 1.21759 * 120.00336 * 5.19587 * 15 6 5 17 17 C 1.46197 * 119.99836 * 185.19716 * 15 6 5 18 18 C 1.50700 * 119.99785 * 255.79046 * 17 15 6 19 19 C 1.35010 * 120.00429 * 75.78158 * 17 15 6 20 20 C 1.47096 * 120.00122 * 171.53916 * 19 17 15 21 21 C 1.39913 * 120.15481 * 144.73070 * 20 19 17 22 22 C 1.37825 * 119.83291 * 179.97438 * 21 20 19 23 23 C 1.38561 * 120.16174 * 359.97438 * 22 21 20 24 24 Cl 1.73593 * 119.83755 * 179.97438 * 23 22 21 25 25 C 1.38562 * 120.32502 * 0.25566 * 23 22 21 26 26 C 1.37827 * 120.15787 * 359.48674 * 25 23 22 27 27 H 1.09000 * 109.46485 * 300.00026 * 1 2 3 28 28 H 1.08998 * 109.46823 * 59.99692 * 1 2 3 29 29 H 1.08994 * 109.47379 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.46713 * 60.00159 * 5 3 2 31 31 H 1.08995 * 109.46838 * 299.99984 * 5 3 2 32 32 H 0.97001 * 120.00313 * 180.02562 * 10 9 7 33 33 H 1.09000 * 109.47005 * 269.96701 * 18 17 15 34 34 H 1.09001 * 109.47101 * 29.95898 * 18 17 15 35 35 H 1.08993 * 109.47660 * 149.96496 * 18 17 15 36 36 H 1.08009 * 119.99865 * 351.54889 * 19 17 15 37 37 H 1.07998 * 120.08242 * 0.02562 * 21 20 19 38 38 H 1.07995 * 119.91805 * 179.97438 * 22 21 20 39 39 H 1.08000 * 119.91892 * 179.72093 * 25 23 22 40 40 H 1.07994 * 120.08137 * 180.24918 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0615 1.1960 0.0000 4 8 1.4034 2.2093 0.0005 5 6 3.5664 1.2747 -0.0006 6 7 3.9819 2.6796 -0.0011 7 6 4.2665 3.3079 -1.1815 8 1 4.9493 4.1445 -1.1970 9 6 3.6766 2.8696 -2.3627 10 7 2.7626 1.9271 -2.3299 11 14 4.1843 3.6218 -3.9955 12 1 5.3167 2.8487 -4.5657 13 1 3.0359 3.5843 -4.9362 14 1 4.6039 5.0302 -3.7824 15 6 4.0835 3.3526 1.1622 16 8 3.9225 2.7696 2.2190 17 6 4.3870 4.7827 1.1552 18 6 5.7698 5.2613 1.5155 19 6 3.4285 5.6746 0.8259 20 6 3.6739 7.1149 0.9969 21 6 3.1409 8.0319 0.0845 22 6 3.3746 9.3799 0.2514 23 6 4.1348 9.8276 1.3199 24 17 4.4244 11.5273 1.5218 25 6 4.6697 8.9249 2.2248 26 6 4.4400 7.5743 2.0736 27 1 -0.3632 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 3.9557 0.7808 -0.8908 31 1 3.9564 0.7804 0.8891 32 1 2.3515 1.6213 -3.1535 33 1 5.8237 5.4413 2.5891 34 1 6.5009 4.5022 1.2373 35 1 5.9850 6.1863 0.9807 36 1 2.4814 5.3307 0.4369 37 1 2.5473 7.6844 -0.7481 38 1 2.9643 10.0889 -0.4522 39 1 5.2650 9.2807 3.0528 40 1 4.8542 6.8722 2.7819 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000095442963.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:45:34 Heat of formation + Delta-G solvation = -86.740974 kcal Electronic energy + Delta-G solvation = -26871.857706 eV Core-core repulsion = 22871.081347 eV Total energy + Delta-G solvation = -4000.776359 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 337.091 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -41.40841 -40.57812 -39.97162 -37.57734 -37.29406 -36.48917 -35.74722 -33.49601 -32.19451 -31.35270 -30.14962 -28.19727 -27.81074 -26.71915 -24.24012 -23.60625 -22.36514 -21.57656 -20.51333 -18.66066 -18.40048 -18.07766 -17.65190 -17.30327 -16.95985 -16.63262 -16.47755 -16.15375 -15.88044 -15.30728 -15.03836 -14.76421 -14.52274 -14.38488 -14.23960 -14.05756 -13.69635 -13.47196 -13.21955 -13.06279 -12.91506 -12.80941 -12.67646 -12.55736 -12.50965 -12.44323 -12.25774 -12.09669 -11.72047 -11.55714 -11.46936 -10.96827 -10.59933 -10.44704 -9.99843 -9.87130 -9.01716 -8.39297 -6.04131 -0.21701 0.35964 1.12260 1.15698 1.41564 1.46384 1.57168 1.69407 1.83320 2.18737 2.33430 2.71026 2.90110 3.10324 3.83660 3.84462 3.94135 4.13557 4.20959 4.29370 4.34999 4.35390 4.41270 4.43809 4.53591 4.63678 4.69607 4.74574 4.77143 4.84850 5.01304 5.05100 5.19657 5.25168 5.33573 5.40534 5.62188 5.63299 5.72741 5.77758 5.81709 6.31483 7.02971 7.24100 7.39958 7.80432 8.67498 Molecular weight = 337.09amu Principal moments of inertia in cm(-1) A = 0.013924 B = 0.003341 C = 0.003051 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2010.466250 B = 8379.126843 C = 9175.238813 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.040 3.960 2 O -0.377 6.377 3 C 0.492 3.508 4 O -0.539 6.539 5 C 0.153 3.847 6 N -0.428 5.428 7 C -0.338 4.338 8 H 0.108 0.892 9 C 0.002 3.998 10 N -0.899 5.899 11 Si 0.993 3.007 12 H -0.267 1.267 13 H -0.290 1.290 14 H -0.260 1.260 15 C 0.494 3.506 16 O -0.631 6.631 17 C -0.109 4.109 18 C -0.100 4.100 19 C -0.096 4.096 20 C -0.048 4.048 21 C -0.103 4.103 22 C -0.109 4.109 23 C -0.043 4.043 24 Cl -0.068 7.068 25 C -0.106 4.106 26 C -0.102 4.102 27 H 0.049 0.951 28 H 0.044 0.956 29 H 0.133 0.867 30 H 0.122 0.878 31 H 0.087 0.913 32 H 0.272 0.728 33 H 0.090 0.910 34 H 0.061 0.939 35 H 0.088 0.912 36 H 0.096 0.904 37 H 0.134 0.866 38 H 0.151 0.849 39 H 0.157 0.843 40 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.054 9.738 2.499 10.507 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 O -0.294 6.294 3 C 0.335 3.665 4 O -0.427 6.427 5 C 0.027 3.973 6 N -0.145 5.145 7 C -0.465 4.465 8 H 0.126 0.874 9 C -0.199 4.199 10 N -0.537 5.537 11 Si 0.817 3.183 12 H -0.192 1.192 13 H -0.216 1.216 14 H -0.184 1.184 15 C 0.285 3.715 16 O -0.520 6.520 17 C -0.112 4.112 18 C -0.156 4.156 19 C -0.115 4.115 20 C -0.049 4.049 21 C -0.122 4.122 22 C -0.128 4.128 23 C -0.070 4.070 24 Cl -0.040 7.040 25 C -0.125 4.125 26 C -0.120 4.120 27 H 0.068 0.932 28 H 0.063 0.937 29 H 0.151 0.849 30 H 0.140 0.860 31 H 0.105 0.895 32 H 0.082 0.918 33 H 0.108 0.892 34 H 0.080 0.920 35 H 0.107 0.893 36 H 0.114 0.886 37 H 0.152 0.848 38 H 0.168 0.832 39 H 0.174 0.826 40 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 2.662 9.775 2.853 10.525 hybrid contribution -0.686 -0.046 -1.123 1.317 sum 1.976 9.729 1.730 10.077 Atomic orbital electron populations 1.23264 0.76284 1.04754 1.01082 1.86414 1.24003 1.33840 1.85156 1.23840 0.92415 0.80780 0.69450 1.90461 1.67273 1.37639 1.47323 1.20491 0.87379 0.85819 1.03590 1.43499 1.56486 1.08239 1.06294 1.19819 1.26298 1.16946 0.83470 0.87432 1.26140 0.94024 0.96698 1.03078 1.69622 1.25288 1.29497 1.29324 0.84906 0.77520 0.79238 0.76657 1.19171 1.21593 1.18397 1.18802 0.81087 0.88212 0.83379 1.90655 1.58701 1.70373 1.32256 1.21638 0.98213 0.91303 1.00016 1.20961 0.90328 1.01782 1.02537 1.21655 0.98786 0.91335 0.99758 1.19071 0.98074 0.91692 0.96021 1.21419 0.99539 0.92282 0.98910 1.21108 0.98528 0.95639 0.97477 1.21168 1.02092 0.85214 0.98509 1.98359 1.95076 1.13406 1.97116 1.21178 1.00195 0.91684 0.99413 1.21709 0.97339 0.95675 0.97232 0.93249 0.93674 0.84868 0.86042 0.89514 0.91801 0.89195 0.91956 0.89308 0.88592 0.84812 0.83178 0.82574 0.83442 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.35 10.56 113.37 1.20 2.55 16 2 O -0.38 -16.25 10.57 -51.38 -0.54 -16.79 16 3 C 0.49 24.71 5.90 71.24 0.42 25.13 16 4 O -0.54 -30.31 15.47 21.96 0.34 -29.97 16 5 C 0.15 7.42 5.20 85.63 0.45 7.87 16 6 N -0.43 -21.51 2.14 -644.69 -1.38 -22.89 16 7 C -0.34 -16.50 8.76 84.14 0.74 -15.76 16 8 H 0.11 4.99 7.07 -2.91 -0.02 4.97 16 9 C 0.00 0.11 5.18 84.98 0.44 0.56 16 10 N -0.90 -45.78 8.49 21.69 0.18 -45.59 16 11 Si 0.99 38.61 29.56 68.60 2.03 40.64 16 12 H -0.27 -9.92 7.11 99.48 0.71 -9.21 16 13 H -0.29 -11.54 7.11 99.48 0.71 -10.83 16 14 H -0.26 -9.70 7.11 99.48 0.71 -9.00 16 15 C 0.49 24.42 6.82 86.31 0.59 25.00 16 16 O -0.63 -34.31 16.74 -4.54 -0.08 -34.39 16 17 C -0.11 -4.39 4.07 -18.54 -0.08 -4.47 16 18 C -0.10 -3.04 8.23 71.24 0.59 -2.45 16 19 C -0.10 -3.72 9.24 23.85 0.22 -3.50 16 20 C -0.05 -1.47 5.17 -20.14 -0.10 -1.57 16 21 C -0.10 -2.81 9.80 22.58 0.22 -2.59 16 22 C -0.11 -2.48 9.81 22.25 0.22 -2.26 16 23 C -0.04 -0.95 6.33 22.42 0.14 -0.80 16 24 Cl -0.07 -1.31 28.95 -2.72 -0.08 -1.39 16 25 C -0.11 -2.26 9.81 22.25 0.22 -2.04 16 26 C -0.10 -2.55 7.76 22.58 0.18 -2.38 16 27 H 0.05 1.67 8.13 -2.39 -0.02 1.65 16 28 H 0.04 1.62 8.13 -2.39 -0.02 1.60 16 29 H 0.13 3.20 8.14 -2.39 -0.02 3.18 16 30 H 0.12 5.82 6.69 -2.39 -0.02 5.81 16 31 H 0.09 4.01 7.50 -2.39 -0.02 3.99 16 32 H 0.27 13.38 8.31 -92.71 -0.77 12.61 16 33 H 0.09 2.35 6.68 -2.39 -0.02 2.34 16 34 H 0.06 1.92 8.11 -2.39 -0.02 1.90 16 35 H 0.09 2.37 6.44 -2.39 -0.02 2.35 16 36 H 0.10 4.33 8.06 -2.91 -0.02 4.31 16 37 H 0.13 3.58 8.06 -2.91 -0.02 3.55 16 38 H 0.15 2.76 8.06 -2.91 -0.02 2.74 16 39 H 0.16 2.50 8.06 -2.91 -0.02 2.48 16 40 H 0.15 3.45 5.46 -2.91 -0.02 3.44 16 Total: -1.00 -66.23 358.75 6.98 -59.24 By element: Atomic # 1 Polarization: 26.79 SS G_CDS: 1.08 Total: 27.87 kcal Atomic # 6 Polarization: 17.85 SS G_CDS: 5.43 Total: 23.28 kcal Atomic # 7 Polarization: -67.29 SS G_CDS: -1.19 Total: -68.48 kcal Atomic # 8 Polarization: -80.87 SS G_CDS: -0.28 Total: -81.15 kcal Atomic # 14 Polarization: 38.61 SS G_CDS: 2.03 Total: 40.64 kcal Atomic # 17 Polarization: -1.31 SS G_CDS: -0.08 Total: -1.39 kcal Total: -66.23 6.98 -59.24 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000095442963.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.498 kcal (2) G-P(sol) polarization free energy of solvation -66.226 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.725 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.984 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.243 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.741 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds